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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 956 fasta sequence
[CCGAGGTTATGTTTAAGTCTTTTATTCGACTCCGTGTTAGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTATTGATCCAGCAAGCAATATGTATGGTAGGCAACGAATCAAAATCGCTACAGCATTATCTATCTAGGTGGTTACAATGCTATGCTATATGGACTACGCAACAACGCCCGAAATTAGCTGGTAGGCTAACCGATATAGAACCATATCGCTCAACGGAGTGACGCTACTTAAATACGTTTCATATACTGGCGAACATAGCAGAGAAACCATTTATTTACGCCGACACACTATGTACATGGCACAGACAACGGANCATATCTACTATATAGAAAATGGANAACATNAACNTNTATCTCGCACACGCGACACGTTCCTAGTTATTCTTATGGCANATAAACAACATGCTGCCAAAAACTATTCAACATTTCCTACCCACTTTAAGTACATAGATAAATATCAGTATAACAACCGTAGNCTCTCTTGTATCATCTGGCATAACTTCANGGTTTGGANAATNGGCCCTAGCCCATTCACACCTGCGCNNTCACCCAAGCAAAACGCCTATNTCCTACATTGGATTTCTAATTCACTTTCGTCCCTTTCCAACNTTCCCGTTAAACACACTTGCGAANACAACAAGCGCNAAAAAGCCAACACTTNGCATTTCNGGCTGNCACAATTNCCCCCCCGTATGTCCAACCAATAACGCCNNAGGGGACAGTANAAGTTACAAAACTTACTNCTAGTAAACCCCTTAAACACCGTCTCGGCGACTNAACTTAAAANCGGCATCAGGGGGGCTCTNGCGCNTTGGCAAATTTAGGCGAGCTGCTTAGGACTACCGAAGTTAACGGCANACCAAGGGGGGCCCGATCGCGCTCTCTGNGNGNCTGGTGCGTACCACCTTAAATTTCCCTCCGNTTATG]
[+] EMBL AL929859 [CCGAGGTTATGTTTAAGTCTTTTATTCGACTCCGTGTTAGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTATTGATCCAGCAAGCAATATGTATGGTAGGCAACGAATCAAAATCGCTACAGCATTATCTATCTAGGTGGTTACAATGCTATGCTATATGGACTACGCAACAACGCCCGAAATTAGCTGGTAGGCTAACCGATATAGAACCATATCGCTCAACGGAGTGACGCTACTTAAATACGTTTCATATACTGGCGAACATAGCAGAGAAACCATTTATTTACGCCGACACACTATGTACATGGCACAGACAACGGANCATATCTACTATATAGAAAATGGANAACATNAACNTNTATCTCGCACACGCGACACGTTCCTAGTTATTCTTATGGCANATAAACAACATGCTGCCAAAAACTATTCAACATTTCCTACCCACTTTAAGTACATAGATAAATATCAGTATAACAACCGTAGNCTCTCTTGTATCATCTGGCATAACTTCANGGTTTGGANAATNGGCCCTAGCCCATTCACACCTGCGCNNTCACCCAAGCAAAACGCCTATNTCCTACATTGGATTTCTAATTCACTTTCGTCCCTTTCCAACNTTCCCGTTAAACACACTTGCGAANACAACAAGCGCNAAAAAGCCAACACTTNGCATTTCNGGCTGNCACAATTNCCCCCCCGTATGTCCAACCAATAACGCCNNAGGGGACAGTANAAGTTACAAAACTTACTNCTAGTAAACCCCTTAAACACCGTCTCGGCGACTNAACTTAAAANCGGCATCAGGGGGGCTCTNGCGCNTTGGCAAATTTAGGCGAGCTGCTTAGGACTACCGAAGTTAACGGCANACCAAGGGGGGCCCGATCGCGCTCTCTGNGNGNCTGGTGCGTACCACCTTAAATTTCCCTCCGNTTATG]
consensusID : consensus_4018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence
[CCGGTCGGCGTAAATCATATATTCAATATTTAATTCACCCAAGGCTTATATTTATAGCTGATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTTTGATCCAGCAAGCAATTGTTGGTGGCAACGAATCAAAATCGCTCAGCATTTCTTCTGGTGGTTACAATGCTATGCTTATGGACTCGAAAACGCCCGAAATTGCTGGTGGCTTCCGATTGAACCATATCGTCAACGGAGTGACGCTCTTAAATCGTTTCATATACTGGCGAACATGCAGAGAAACCATTTTATTTAGCGAAATATGTTTGGACAGAAACGACATTTACTTTGAAATGAAAATAACTTTTGAAGGAAGTCCTGTTCTTGCAATACAATGCTGTAAAACTTCAAATTCTCCATTAATCATGATAATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTGCATCAATGGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCATCTAAATGAAAACAACATGTTGGATCCTTTAAACTGTTATAATTTTACTAATGATATAGGACAAGTAGTTCCGGTCGCTGCAACTGTCACCAATACAAGTAATAATATGCAATGCCAAATTGCAATCGCAT]
[+] EMBL BM607325 [CCGGTCGGCGTAAATCATATATTCAATATTTAATTCACCCAAGGCTTATATTTATAGCTGATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTTTGATCCAGCAAGCAATTGTTGGTGGCAACGAATCAAAATCGCTCAGCATTTCTTCTGGTGGTTACAATGCTATGCTTATGGACTCGAAAACGCCCGAAATTGCTGGTGGCTTCCGATTGAACCATATCGTCAACGGAGTGACGCTCTTAAATCGTTTCATATACTGGCGAACATGCAGAGAAACCATTTTATTTAGCGAAATATGTTTGGACAGAAACGACATTTACTTTGAAATGAAAATAACTTTTGAAGGAAGTCCTGTTCTTGCAATACAATGCTGTAAAACTTCAAATTCTCCATTAATCATGATAATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTGCATCAATGGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCATCTAAATGAAAACAACATGTTGGATCCTTTAAACTGTTATAATTTTACTAATGATATAGGACAAGTAGTTCCGGTCGCTGCAACTGTCACCAATACAAGTAATAATATGCAATGCCAAATTGCAATCGCAT]
[+] EMBL BM589541 [ ccgCCCAAGGCTTATATTTATAGCTGATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTTTGATCCAGCAAGCAATTGTTGGTGGCAACGAATCAAAATCGCTCAGCATTTCTTCTGGTGGTTACAATGCTATGCTTATGGACTCGAAAACGCCCGAAATTGCTGGTGGCTTCCGATTGAACCATATCGTCAACGGAGTGACGCTCTTAAATCGTTTCATATACTGGCGAACATGCAGAGAAACCATTTTATTTAGCGAAATATGTTTGGACAGAAACGACATTTACTTTGAAATGAAAATAACTTTTGAAGGAAGTCCTGTTCTTGCAATACAATGCTGTAAAACTTCAAATTCTCCATTAATCATGATAATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTGCATCAATGGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCATCTAAATGAAAACAACATGTTGGATCCTTTAAACTGTTATAATTTTACTAATGATATAGGACAAGTAGTTCCGGTCGCTGCAACTGTCACCAATACAAGTAATAATATGCAATGCCAAATTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4018#0 ------------------------------------------------------------
consensus_4018#1 CCGGTCGGCGTAAATCATATATTCAATATTTAATTCACCCAAGGCTTATATTTATAGCTG 60
consensus_4018#0 --------CCGAGGTT-ATGTTTAAGTCTTTTATTCGACTCCGTGTTAGTCACTTCTTAG 51
consensus_4018#1 ATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAG 120
* ** ******************** ******* ************
consensus_4018#0 CCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTATTGATCCAGCAAGCAATAT 111
consensus_4018#1 CCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCT-TTGATCCAGCAAGCAAT-T 178
**************************************** ***************** *
consensus_4018#0 GTATGGTAGGCAACGAATCAAAATCGCTACAGCATTATCTATCTAGGTGGTTACAATGCT 171
consensus_4018#1 GT-TGGT-GGCAACGAATCAAAATCGCT-CAGCATTTCTTCT---GGTGGTTACAATGCT 232
** **** ******************** ******* * * ***************
consensus_4018#0 ATGCTATATGGACTACGCAACAACGCCCGAAATTAGCTGGTAGGCTAACCGATATAGAAC 231
consensus_4018#1 ATGCT-TATGGACT---CGAAAACGCCCGAAATT-GCTGGTGGCTT--CCGATT--GAAC 283
***** ******** * * ************* ****** * * ***** ****
consensus_4018#0 CATATCGCTCAACGGAGTGACGCTACTTAAATACGTTTCATATACTGGCGAACATAGCAG 291
consensus_4018#1 CATATCG-TCAACGGAGTGACGCT-CTTAAAT-CGTTTCATATACTGGCGAACAT-GCAG 339
******* **************** ******* ********************** ****
consensus_4018#0 AGAAACCATTTATTTACGCCGACACACTATGTACATGGCACAGACAACGGANCATATCTA 351
consensus_4018#1 AGAAACCATTTTATT----TAGCGAAATATGT---TTGGACAGA-----AACGACATTTA 387
*********** ** * * ***** * * ***** * * ** **
consensus_4018#0 CTATATAGAAAATGGANAACATNAACNTNTATCTCGCACACGCGACACGTTCCTAGTTAT 411
consensus_4018#1 CTTTG----AAATGAAAA----TAACTTTT-----------GAAGGAAGTCC-----TGT 423
** * ***** * * *** * * * * ** * * *
consensus_4018#0 TCTTATGGCANATAAACAACATGCTGCCAAAAACTATTCAACATTTCCTACCCACTTTAA 471
consensus_4018#1 TCTTGCAATACA--------ATGCTGT--AAAACT--TCAA-ATTCTCCA------TTAA 464
**** * * ****** ****** **** *** * * ****
consensus_4018#0 GTACATAGATAAATATCAGTATAACAACCGTAGNCTCTCTTGTATCATCTGGCATAACTT 531
consensus_4018#1 TCAT---GATA---ATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTG 518
* **** *** ** *** * * * ** ***** ** ** **
consensus_4018#0 CANGGTTTGGANAATNGGCCCTAGCCCATTCACACCTGCGCNNTCACCCAAGCAAAACGC 591
consensus_4018#1 CATCAAT-GGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCAT-CTAAATGA 576
** * *** * * * ** * * * ** * *** *
consensus_4018#0 CTATNTCCTACATTGGATTTCTAATTCACTTTCGTCCCTTTCCAACNTTCCCGTTAAACA 651
consensus_4018#1 AAACAAC--ATGTTGGATCCTTTA--AACTGTTATAATTTTACTAATGATATAGGACAAG 632
* * * ****** * * *** * * *** * * * *
consensus_4018#0 CACTTGCGAANACAACAAGCGCNAAAAAGCCAACACTTNGCATTTCNGGCTGNCACAATT 711
consensus_4018#1 TAGTTCCGGTCGCTGCAACTGTCACCAAT---ACAAGTAATAATATGCAATGCCA-AATT 688
* ** ** * *** * * ** *** * * * ** ** ****
consensus_4018#0 NCCCCCCCGTATGTCCAACCAATAACGCCNNAGGGGACAGTANAAGTTACAAAACTTACT 771
consensus_4018#1 GCAATCGCAT-------------------------------------------------- 698
* * * *
consensus_4018#0 NCTAGTAAACCCCTTAAACACCGTCTCGGCGACTNAACTTAAAANCGGCATCAGGGGGGC 831
consensus_4018#1 ------------------------------------------------------------
consensus_4018#0 TCTNGCGCNTTGGCAAATTTAGGCGAGCTGCTTAGGACTACCGAAGTTAACGGCANACCA 891
consensus_4018#1 ------------------------------------------------------------
consensus_4018#0 AGGGGGGCCCGATCGCGCTCTCTGNGNGNCTGGTGCGTACCACCTTAAATTTCCCTCCGN 951
consensus_4018#1 ------------------------------------------------------------
consensus_4018#0 TTATG 956
consensus_4018#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||