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Anopheles gambiae
cluster # 4019 cluster # 4019       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4019#0 length = 835 sequences # 1  
consensus_4019#1 length = 599 sequences # 2  

consensusID : consensus_4019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 835
fasta sequence
                              [GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACAAGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAATGAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGACGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCTTATTCTTTGATTATCTGGTCGTCCGAGATTGGAAATTTCTATGAAATTATCGAACCAATCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATGTAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCCATGCCACGTTCCCTACTTGCCATTACACCACCCCGTTAATTTGAGTTTGATTTCAAAGTGACTGAAAGGGTACAGGCCTCGTTGCTCGAGCGTAAACTTGCAACTCTGGCGACTGGGTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCTGTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCGATATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAGCAGCTTTCTAAGGGTGTGTCGATCTAACGCTGGAACCTGTATCCACAGCTGCTTGAATCCACGAGCCTTTCGATTGGCCATCNGNATTTCAGAATGTGTACCACATATGGCTCGGGTGGGCCAAAGGTGCCTGGTCTGTCCGAAG]

[+] EMBL AL931334             [GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACAAGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAATGAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGACGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCTTATTCTTTGATTATCTGGTCGTCCGAGATTGGAAATTTCTATGAAATTATCGAACCAATCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATGTAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCCATGCCACGTTCCCTACTTGCCATTACACCACCCCGTTAATTTGAGTTTGATTTCAAAGTGACTGAAAGGGTACAGGCCTCGTTGCTCGAGCGTAAACTTGCAACTCTGGCGACTGGGTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCTGTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCGATATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAGCAGCTTTCTAAGGGTGTGTCGATCTAACGCTGGAACCTGTATCCACAGCTGCTTGAATCCACGAGCCTTTCGATTGGCCATCNGNATTTCAGAATGTGTACCACATATGGCTCGGGTGGGCCAAAGGTGCCTGGTCTGTCCGAAG]


>consensus_4019#0 GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACA AGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAAT GAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGA CGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCT TATTCTTTGATTATCTGGTCGTCCGAGATTGGAAATTTCTATGAAATTATCGAACCAATC ATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATGTA ACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCCAT GCCACGTTCCCTACTTGCCATTACACCACCCCGTTAATTTGAGTTTGATTTCAAAGTGAC TGAAAGGGTACAGGCCTCGTTGCTCGAGCGTAAACTTGCAACTCTGGCGACTGGGTTTTG TTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCTGTTCAT GTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCGATATTCGAA CGCGGATCTACTTTTTGCTCATTTGCTCAGCAGCTTTCTAAGGGTGTGTCGATCTAACGC TGGAACCTGTATCCACAGCTGCTTGAATCCACGAGCCTTTCGATTGGCCATCNGNATTTC AGAATGTGTACCACATATGGCTCGGGTGGGCCAAAGGTGCCTGGTCTGTCCGAAG



consensusID : consensus_4019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence
                              [CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCTTATTCNTTTGATTATCGGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAATCATTGCACGCATGGCAGGTATACTGCTCTATCATCACAAGGACGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGCGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGTCATCACACCAACNCCCGTTAATTGAGTTGATTTCAAAGGATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACTGCAACTATGGCGCTGGATTTCGTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCGNCTTGAGACAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNNCGATCTAACGCTGGAACCGTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCGGCCATTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC]

[+] EMBL AL929884             [CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCTTATTCNTTTGATTATCGGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAATCATTGCACGCATGGCAGGTATACTGCTCTATCATCACAAGGACGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGCGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGTCATCACACCAACNCCCGTTAATTGAGTTGATTTCAAAGGATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACTGCAACTATGGCGCTGGATTTCGTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCGNCTTGAGACAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNNCGATCTAACGCTGGAACCGTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCGGCCA                                         ]
[+] EMBL BM625629             [                                                                                                               ccGCAGGTATACTGCTCTATCATCACAAGGAAGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGAGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGCCATCACACC ACCCCCGTTAATTGAGTTGATTTCAAAGGATG AAAGTGTACAGGCCTTG T TGCTCGAGCGTAAACTGCAACTCTGGCGATGGGTTT GTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCG CTTGAGGCAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTTT  GCTCATTGCTCAG CAGCTTT CTAAGGGTGTGT TCGATCTAACGCTGGAACCTCATCCACAGC GCCTGA ATCCACGAGCCTT TCGATT GGCATTTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC]


>consensus_4019#1 CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCTTATTCNTTTGATTATCGGTC GTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAATCATTGCACGCATGGCAGGTA TACTGCTCTATCATCACAAGGACGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATC ATCATGCGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGTCATCACACCAA CNCCCGTTAATTGAGTTGATTTCAAAGGATGTAAAGTGTACAGGCCTCGATATGCTCGAG CGTAAACTGCAACTATGGCGCTGGATTTCGTTCCGACGATTTGCTTGACGTGGAAGAGTT CAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCGNCTTGAGACAGT GTGGCGCCATCCGCATATTCGAAGCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTT ACTAAGGGTGTGTNNCGATCTAACGCTGGAACCGTATCCACAGCAGCTTGACATCCACGA GCCTTATCGATTCGGCCATTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4019#0      GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACA 60
consensus_4019#1      ------------------------------------------------------------
                                                                                  

consensus_4019#0      AGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAAT 120
consensus_4019#1      ------------------------------------------------------------
                                                                                  

consensus_4019#0      GAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGA 180
consensus_4019#1      ------------------------------------------------------------
                                                                                  

consensus_4019#0      CGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCT 240
consensus_4019#1      --------------------CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCT 40
                                                ** ****  *  *   **  ** *  *  *****

consensus_4019#0      TATTCTTT-GATTATCTGGTCGTCCGAGATTGGAAA-TTTCTATGAAATTATCGAACCAA 298
consensus_4019#1      TATTCNTTTGATTATC-GGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAA 99
                      ***** ** ******* ******************* ***********************

consensus_4019#0      TCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATG 358
consensus_4019#1      TCATTGCAC-GCATGGCAGGTATACT-GCTCTATCATCACAAGGACGAAC-GGCAGCATG 156
                      ********* **************** ****************** **** *********

consensus_4019#0      TAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCC 418
consensus_4019#1      TAACGCTG-GCCATAAAGC-GCAATCATCAT-GCGTCACACTC-GGTC-GTCACAGTTCC 211
                      ******** ********** **** ****** * ********* **** ***********

consensus_4019#0      ATGCCACGTTCCCTACTTGCCATTACACCA--CCCCGTTAATTTGAGTTTGATTTCAAAG 476
consensus_4019#1      A-GCCACGTTCCCTACT-GTCATCACACCAACNCCCGTTAATT-GAGTT-GATTTCAAAG 267
                      * *************** * *** ******   ********** ***** **********

consensus_4019#0      TGACTGAAAGGGTACAGGCCTCGTT--GCTCGAGCGTAAACTTGCAACTCTGGCGACTGG 534
consensus_4019#1      -GATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACT-GCAACTATGGCG-CTGG 324
                       **   **** ************ *  *************** ****** ***** ****

consensus_4019#0      GTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCT 594
consensus_4019#1      ATTTCGTTCCGACGATTT-GCTTGACGTGGAA--GAGTTCAATACC-GTGCCACCC--GC 378
                       *** ************* *** ******* *  ** ********* *********    

consensus_4019#0      GTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCG-AT 653
consensus_4019#1      GTTCATGT-GCACGGTACTTACCCTGTA-CCGNCTTGAGACAGTGTGGCGCCATCCGCAT 436
                      ******** ******************* **  ****** ***************** **

consensus_4019#0      ATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAG-CAGCTTT-CTAAGGGTGTGTCG 711
consensus_4019#1      ATTCGAA-GCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNN 495
                      ******* ************ *       ******** ******* ************  

consensus_4019#0      --ATCTAACGCTGGAACCTGTATCCACAGCTGCTTGA-ATCCACGAGCCTT-TCGATTGG 767
consensus_4019#1      CGATCTAACGCTGGAACC-GTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCG 554
                        **************** *********** ****** ************* ****** *

consensus_4019#0      CCATCNGNATTTCAGAATGTGTACCAC-ATATGGCTCGGGTGGGCCAAAGGTGCCTGGTC 826
consensus_4019#1      GCCATTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC--------------- 599
                       *    * ******************* *************** *               

consensus_4019#0      TGTCCGAAG 835
consensus_4019#1      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)