These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence [GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACAAGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAATGAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGACGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCTTATTCTTTGATTATCTGGTCGTCCGAGATTGGAAATTTCTATGAAATTATCGAACCAATCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATGTAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCCATGCCACGTTCCCTACTTGCCATTACACCACCCCGTTAATTTGAGTTTGATTTCAAAGTGACTGAAAGGGTACAGGCCTCGTTGCTCGAGCGTAAACTTGCAACTCTGGCGACTGGGTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCTGTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCGATATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAGCAGCTTTCTAAGGGTGTGTCGATCTAACGCTGGAACCTGTATCCACAGCTGCTTGAATCCACGAGCCTTTCGATTGGCCATCNGNATTTCAGAATGTGTACCACATATGGCTCGGGTGGGCCAAAGGTGCCTGGTCTGTCCGAAG] [+] EMBL AL931334 [GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACAAGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAATGAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGACGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCTTATTCTTTGATTATCTGGTCGTCCGAGATTGGAAATTTCTATGAAATTATCGAACCAATCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATGTAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCCATGCCACGTTCCCTACTTGCCATTACACCACCCCGTTAATTTGAGTTTGATTTCAAAGTGACTGAAAGGGTACAGGCCTCGTTGCTCGAGCGTAAACTTGCAACTCTGGCGACTGGGTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCTGTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCGATATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAGCAGCTTTCTAAGGGTGTGTCGATCTAACGCTGGAACCTGTATCCACAGCTGCTTGAATCCACGAGCCTTTCGATTGGCCATCNGNATTTCAGAATGTGTACCACATATGGCTCGGGTGGGCCAAAGGTGCCTGGTCTGTCCGAAG] consensusID : consensus_4019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCTTATTCNTTTGATTATCGGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAATCATTGCACGCATGGCAGGTATACTGCTCTATCATCACAAGGACGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGCGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGTCATCACACCAACNCCCGTTAATTGAGTTGATTTCAAAGGATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACTGCAACTATGGCGCTGGATTTCGTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCGNCTTGAGACAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNNCGATCTAACGCTGGAACCGTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCGGCCATTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC] [+] EMBL AL929884 [CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCTTATTCNTTTGATTATCGGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAATCATTGCACGCATGGCAGGTATACTGCTCTATCATCACAAGGACGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGCGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGTCATCACACCAACNCCCGTTAATTGAGTTGATTTCAAAGGATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACTGCAACTATGGCGCTGGATTTCGTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCGNCTTGAGACAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNNCGATCTAACGCTGGAACCGTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCGGCCA ] [+] EMBL BM625629 [ ccGCAGGTATACTGCTCTATCATCACAAGGAAGAACGGCAGCATGTAACGCTGGCCATAAAGCGCAATCATCATGAGTCACACTCGGTCGTCACAGTTCCAGCCACGTTCCCTACTGCCATCACACC ACCCCCGTTAATTGAGTTGATTTCAAAGGATG AAAGTGTACAGGCCTTG T TGCTCGAGCGTAAACTGCAACTCTGGCGATGGGTTT GTTCCGACGATTTGCTTGACGTGGAAGAGTTCAATACCGTGCCACCCGCGTTCATGTGCACGGTACTTACCCTGTACCG CTTGAGGCAGTGTGGCGCCATCCGCATATTCGAAGCGGATCTACTTTT GCTCATTGCTCAG CAGCTTT CTAAGGGTGTGT TCGATCTAACGCTGGAACCTCATCCACAGC GCCTGA ATCCACGAGCCTT TCGATT GGCATTTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4019#0 GCAAGAATCGCCGAGNGATACGGTACACTCGATACTGTGGCGGGTGTACTGGAACAGACA 60 consensus_4019#1 ------------------------------------------------------------ consensus_4019#0 AGTACCGCCCGANNGCTTACGAGTGGTTTCGGCAAAGTGTTGCCTTCTATCAGTGTGAAT 120 consensus_4019#1 ------------------------------------------------------------ consensus_4019#0 GAACCAGTGAAGTGATTCGCAGCAGAACGACGGTGATCCTTTCGCTCACTTACTGAGTGA 180 consensus_4019#1 ------------------------------------------------------------ consensus_4019#0 CGAACATTACGTCACCTACAATATTCTTGACCTGATAGTGCCTGTATACCTGTACCATCT 240 consensus_4019#1 --------------------CCGAGGTTTACCTACTGATCGTTGAGTAGCGCTCGCATCT 40 ** **** * * ** ** * * ***** consensus_4019#0 TATTCTTT-GATTATCTGGTCGTCCGAGATTGGAAA-TTTCTATGAAATTATCGAACCAA 298 consensus_4019#1 TATTCNTTTGATTATC-GGTCGTCCGAGATTGGAAAGTTTCTATGAAATTATCGAACCAA 99 ***** ** ******* ******************* *********************** consensus_4019#0 TCATTGCACTGCATGGCAGGTATACTTGCTCTATCATCACAAGGAAGAACTGGCAGCATG 358 consensus_4019#1 TCATTGCAC-GCATGGCAGGTATACT-GCTCTATCATCACAAGGACGAAC-GGCAGCATG 156 ********* **************** ****************** **** ********* consensus_4019#0 TAACGCTGTGCCATAAAGCTGCAACCATCATTGAGTCACACTCTGGTCTGTCACAGTTCC 418 consensus_4019#1 TAACGCTG-GCCATAAAGC-GCAATCATCAT-GCGTCACACTC-GGTC-GTCACAGTTCC 211 ******** ********** **** ****** * ********* **** *********** consensus_4019#0 ATGCCACGTTCCCTACTTGCCATTACACCA--CCCCGTTAATTTGAGTTTGATTTCAAAG 476 consensus_4019#1 A-GCCACGTTCCCTACT-GTCATCACACCAACNCCCGTTAATT-GAGTT-GATTTCAAAG 267 * *************** * *** ****** ********** ***** ********** consensus_4019#0 TGACTGAAAGGGTACAGGCCTCGTT--GCTCGAGCGTAAACTTGCAACTCTGGCGACTGG 534 consensus_4019#1 -GATGTAAAGTGTACAGGCCTCGATATGCTCGAGCGTAAACT-GCAACTATGGCG-CTGG 324 ** **** ************ * *************** ****** ***** **** consensus_4019#0 GTTTTGTTCCGACGATTTTGCTCGACGTGGCAACGAATTCAATACCTGTGCCACCCTGCT 594 consensus_4019#1 ATTTCGTTCCGACGATTT-GCTTGACGTGGAA--GAGTTCAATACC-GTGCCACCC--GC 378 *** ************* *** ******* * ** ********* ********* consensus_4019#0 GTTCATGTTGCACGGTACTTACCCTGTAACCTGCTTGAGGCAGTGTGGCGCCATCCG-AT 653 consensus_4019#1 GTTCATGT-GCACGGTACTTACCCTGTA-CCGNCTTGAGACAGTGTGGCGCCATCCGCAT 436 ******** ******************* ** ****** ***************** ** consensus_4019#0 ATTCGAACGCGGATCTACTTTTTGCTCATTTGCTCAG-CAGCTTT-CTAAGGGTGTGTCG 711 consensus_4019#1 ATTCGAA-GCGGATCTACTTNTAAGCTCATTGCTCAGACAGCTTTACTAAGGGTGTGTNN 495 ******* ************ * ******** ******* ************ consensus_4019#0 --ATCTAACGCTGGAACCTGTATCCACAGCTGCTTGA-ATCCACGAGCCTT-TCGATTGG 767 consensus_4019#1 CGATCTAACGCTGGAACC-GTATCCACAGCAGCTTGACATCCACGAGCCTTATCGATTCG 554 **************** *********** ****** ************* ****** * consensus_4019#0 CCATCNGNATTTCAGAATGTGTACCAC-ATATGGCTCGGGTGGGCCAAAGGTGCCTGGTC 826 consensus_4019#1 GCCATTGTATTTCAGAATGTGTACCACCATATGGCTCGGGTGGCC--------------- 599 * * ******************* *************** * consensus_4019#0 TGTCCGAAG 835 consensus_4019#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||