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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 873 fasta sequence
[GCAGAATTCGCCACGAGGGTTAAGCCGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGGGAGAAGCATAACGCTACAGCCTATGAAACTAGTTACTAACAACGTGATAATAGTTCCTGTGCAGCCAAAAACATACAAATAGCGAAACACGAAAAATCAAATGATTAAGTGCCGGCACTAGCAAGCAAAACGATAGGGAACGATAGAGGTGGCCGAAGCGTTTCTTGGTATTTTGAGCTTTTATGTTCATTCGTTTGTGAGTAGGCTTATTAGATGTTTCTTTTTTAGTGCTTAAAACATGTAAAACTGTTTCGTTTGCTGTTTCCTATAGCCATTTACGTATACAAACATACCAACAGCCATCCATCGTATCCGACCAGTGGATCGATCGCATTTTCTAACGGCCATTTAAGCAAGCAAGAACATCAGTCAATCGTTGTTGTTGCTGTAGTAGGATCTGAGCAAGAAGCAAGAGAATAGCTCCAGTTAGAAGCTAGGTGTAGCTAAACTATTGTTCTAGTCAATTTGCCGAAGCCCCGAAAGCGCGGATTTTGGGGCAGCGAAAACCAAAAGGAACTGGTGTAAAGCAAGCAATTGGGGTGCAACCCGAACGGAAGCGAGCAGTTGCGCGGAGGGAGGGTAGCGGGGCACTTTGGGCAGACAGGGNAATTCCCTTTTTTGGGCCGGNAAAAGGACCAAAGGCCGCTTTTTNAGAACCCGGGTTTCGGCNGNCATTGTCGAAACGATNTTGGGCTGGGAANCTCTGGGGGACNNCTGNNGCTGAACGTTCTCCACTTTGTAGACGACAGTCGTCTGCGTTTGGTGTGAGANAGAANNNCCGCACGCTGAGTTCGGGGGA]
[+] EMBL BX467381 [GCAGAATTCGCCACGAGGGTTAAGCCGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGGGAGAAGCATAACGCTACAGCCTATGAAACTAGTTACTAACAACGTGATAATAGTTCCTGTGCAGCCAAAAACATACAAATAGCGAAACACGAAAAATCAAATGATTAAGTGCCGGCACTAGCAAGCAAAACGATAGGGAACGATAGAGGTGGCCGAAGCGTTTCTTGGTATTTTGAGCTTTTATGTTCATTCGTTTGTGAGTAGGCTTATTAGATGTTTCTTTTTTAGTGCTTAAAACATGTAAAACTGTTTCGTTTGCTGTTTCCTATAGCCATTTACGTATACAAACATACCAACAGCCATCCATCGTATCCGACCAGTGGATCGATCGCATTTTCTAACGGCCATTTAAGCAAGCAAGAACATCAGTCAATCGTTGTTGTTGCTGTAGTAGGATCTGAGCAAGAAGCAAGAGAATAGCTCCAGTTAGAAGCTAGGTGTAGCTAAACTATTGTTCTAGTCAATTTGCCGAAGCCCCGAAAGCGCGGATTTTGGGGCAGCGAAAACCAAAAGGAACTGGTGTAAAGCAAGCAATTGGGGTGCAACCCGAACGGAAGCGAGCAGTTGCGCGGAGGGAGGGTAGCGGGGCACTTTGGGCAGACAGGGNAATTCCCTTTTTTGGGCCGGNAAAAGGACCAAAGGCCGCTTTTTNAGAACCCGGGTTTCGGCNGNCATTGTCGAAACGATNTTGGGCTGGGAANCTCTGGGGGACNNCTGNNGCTGAACGTTCTCCACTTTGTAGACGACAGTCGTCTGCGTTTGGTGTGAGANAGAANNNCCGCACGCTGAGTTCGGGGGA]
consensusID : consensus_4022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[CCCGAGGTTACCAAATTCTAGGTAGATATATGATATACTGTTGCTAAGGCAAGTTGTTAAAATTGAAACCAAAACCCCTGTTATCGAACGAAACCGCGAAACGGAGAAGGAGATGTTAAGCCGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGGGAGAAGCATAACGCTACAGCCTATGAAACTAGTTACTAACAACGTGATAATAGTTCCTGTGCAGCAAAAACATACAAATAGCGAAACACGAAACAAAATCAAATGATTAAGTGCCGGCACTAGCAAGCAAACCGATAGTGAACGATGGAGGTGGCCGAAGCGTTATCTTGGTATTTTGAGCTTTTATGTTCGTTCGTTGTGAGTACGGCTTATTAGATGTTTCTTTCTTTAGTGCTTCANAAACATGTAACAACTGTATCGNTNGCCGTTTCCTATAGCCATTTACGTATACAAACATACCAAAAGCCATCCATCGTATCGACCAGTGGGATCGATCGCATTTTCTAACCGGCACTTTANGCAAGCAAGCAGCCCATCATCNAATCGGAGCGCAGNGGCGTGGACGNACGGATCTGAAGCANGCAAGGCCACGAGACATAGGCTCCAGGTCTAGAAAGCTAAGGGTGCAGCTAAAACTCATAGGGCCCANGTCCANANNAGGCCGAACACCCGCNAAAGCGCGCGGAATATCGGGGCCANC]
[+] EMBL AL929949 [CCCGAGGTTACCAAATTCTAGGTAGATATATGATATACTGTTGCTAAGGCAAGTTGTTAAAATTGAAACCAAAACCCCTGTTATCGAACGAAACCGCGAAACGGAGAAGGAGATGTTAAGCCGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGGGAGAAGCATAACGCTACAGCCTATGAAACTAGTTACTAACAACGTGATAATAGTTCCTGTGCAGCAAAAACATACAAATAGCGAAACACGAAACAAAATCAAATGATTAAGTGCCGGCACTAGCAAGCAAACCGATAGTGAACGATGGAGGTGGCCGAAGCGTTATCTTGGTATTTTGAGCTTTTATGTTCGTTCGTTGTGAGTACGGCTTATTAGATGTTTCTTTCTTTAGTGCTTCANAAACATGTAACAACTGTATCGNTNGCCGTTTCCTATAGCCATTTACGTATACAAACATACCAAAAGCCATCCATCGTATCGACCAGTGGGATCGATCGCATTTTCTAACCGGCACTTTANGCAAGCAAGCAGCCCATCATCNAATCGGAGCGCAGNGGCGTGGACGNACGGATCTGAAGCANGCAAGGCCACGAGACATAGGCTCCAGGTCTAGAAAGCTAAGGGTGCAGCTAAAACTCATAGGGCCCANGTCCANANNAGGCCGAACACCCGCNAAAGCGCGCGGAATATCGGGGCCANC]
consensusID : consensus_4022#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGCCCTTACCCTCCCTAATGTGAACTAATGAGAGAACGATTTGCTTTCTCGAATTTGTTAAAAAAAACCCTGTTAACATTGTTGTTGTGTTGTGAAACGTTCGCCTTTTATAGTAGTGTCTGTCGAGAGGCAGAAGATGCTCGTTTTGCCGTCCCCTTTTCACGGGACGGTTGTCCTATTTTTTGTGTGCTTAAATGTACATAACCAAAGCAAATCCCTTTCCTATAAAAGCAAAAGCTCGTCCCGAAAAAAAACAAACTCGAAGTGAAGTCAGCAAGCGAAAAATGCAAAAGATAAATCTTCAGCTAGTAAAATACGCCAAAACGAAAGGAAAAACAACGACGCGAAACATATTACAAAAAAACAAGCGAAAATCAAAACCCAAATTTCTAGGTAGATATATGATATACTGTTGCTAAGGCAAGTTGTTAAAATTGAAACCAAAACCACTGTTATCGAACGAAACCGCGAAACGGAGAAGAAGATGTTAAGCTGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGGGAGAAGCATAACGCTACAGCCAATGAAACTAGTTACTAACAACGTGATAATAGTTCCTGTGCAGCCAAAAACATACAAATAGCGAAACACGAAAAATCAAATGAGTAAGTGCCGGCACTAGCAAGCAAAACGATAGCGAACGAT]
[+] EMBL BM606114 [CCGCCCTTACCCTCCCTAATGTGAACTAATGAGAGAACGATTTGCTTTCTCGAATTTGTTAAAAAAAACCCTGTTAACATTGTTGTTGTGTTGTGAAACGTTCGCCTTTTATAGTAGTGTCTGTCGAGAGGCAGAAGATGCTCGTTTTGCCGTCCCCTTTTCACGGGACGGTTGTCCTATTTTTTGTGTGCTTAAATGTACATAACCAAAGCAAATCCCTTTCCTATAAAAGCAAAAGCTCGTCCCGAAAAAAAACAAACTCGAAGTGAAGTCAGCAAGCGAAAAATGCAAAAGATAAATCTTCAGCTAGTAAAATACGCCAAAACGAAAGGAAAAACAACGACGCGAAACATATTACAAAAAAACAAGCGAAAATCAAAACCCAAATTTCTAGGTAGATATATGATATACTGTTGCTAAGGCAAGTTGTTAAAATTGAAACCAAAACCACTGTTATCGAACGAAACCGCGAAACGGAGAAGAAGATGTTAAGCTGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGGGAGAAGCATAACGCTACAGCCAATGAAACTAGTTACTAACAACGTGATAATAGTTCCTGTGCAGCCAAAAACATACAAATAGCGAAACACGAAAAATCAAATGAGTAAGTGCCGGCACTAGCAAGCAAAACGATAGCGAACGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4022#0 ------------------------------------------------------------
consensus_4022#1 CCCGAGGTTACCAAATTCTAGGTAGATATATGATATACTGTTGCTAAGGCAAGTTGTTAA 60
consensus_4022#2 -----------------------------------------------CCGCCCTTACCCT 13
consensus_4022#0 -----------------------------------GCAGAATTCGCCACGAGG-GTTAAG 24
consensus_4022#1 AATTGAAACCAAAACCCCTGTTATCGAACGAAACCGCGAAACGGAGAAGGAGATGTTAAG 120
consensus_4022#2 CCCTAATGTGAACTAATGAGAGAACGATTTGCTTTCTCGAATTTGTTAAAAAAAACCCTG 73
** * * *
consensus_4022#0 CCGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGG--GAGAAGCA 82
consensus_4022#1 CCGAGCTTGATTTTTACCTATATATATTGCCTATACTGTAGGAGGGGAGG--GAGAAGCA 178
consensus_4022#2 TTAACATTGTTGTTGTGTTGTGAAACGTTCGCCTTTTATAGTAGTGTCTGTCGAGAGGCA 133
* *** * ** * * * * * * * *** ** * * **** ***
consensus_4022#0 TAACGCTACAGCCTATGAAACTAGTTACTAACAACGTGATAAT---AGTTCCTGTGCAGC 139
consensus_4022#1 TAACGCTACAGCCTATGAAACTAGTTACTAACAACGTGATAAT---AGTTCCTGTGCAGC 235
consensus_4022#2 GAA-GATGCTCGTTTTGCCGTCCCCTTTTCACGGGACGGTTGTCCTATTTTTTGTGTGCT 192
** * * * * ** * * ** * * * * ** ****
consensus_4022#0 CAAAAACATACAAATAGCGAAACACGAAA---AATCAAATGATTAAGTGCCGGCACTAGC 196
consensus_4022#1 -AAAAACATACAAATAGCGAAACACGAAACAAAATCAAATGATTAAGTGCCGGCACTAGC 294
consensus_4022#2 TAAATGTACATAACCAAAGCAAATCCCTTTCCTATAAAAGCAAAAGCTCGTCCCGAAAAA 252
*** * * ** * * ** * ** *** * * * * *
consensus_4022#0 AAGCAAAACGATAGGGAACGATAGAGGTGGCCGAAGCGTT-TCTTGGTATTTTGAGCTTT 255
consensus_4022#1 AAGCAAACCGATAGTGAACGATGGAGGTGGCCGAAGCGTTATCTTGGTATTTTGAGCTTT 354
consensus_4022#2 AAACAAACTCGAAGTGAAGTCAGCAAGCGA--AAAATGCAAAAGATAAATCTTCAGCTAG 310
** **** ** *** * * * ** * ** ** ****
consensus_4022#0 TATGTTCATTCGTTTGTGAGTA-GGCTTATTAGATGTTTCTTT-TTTAGTGCTT--AAAA 311
consensus_4022#1 TATGTTCGTTCGTT-GTGAGTACGGCTTATTAGATGTTTCTTTCTTTAGTGCTTCANAAA 413
consensus_4022#2 TAAA---ATACGCCAAAACGAAAGGAAAAACA-ACGACGCGAAACATATTACAA-AAAAA 365
** * ** * * ** * * * * * ** * * ***
consensus_4022#0 CATGTAA-AACTGTTTCGTTTGCTGTTTCCTATAGCCATTTACGTATACAAACATACCAA 370
consensus_4022#1 CATGTAACAACTGTATCGNTNGCCGTTTCCTATAGCCATTTACGTATACAAACATACCAA 473
consensus_4022#2 CAAGCGAAAATCA----AAACCCAAATTTCTAGGTAGATATATG-ATATACTGTTGCTAA 420
** * * ** * ** *** ** ** * *** * * * **
consensus_4022#0 CAGCCATCCATCGTATCCGACCAGTGG-ATCGATCGCATTTTCTAACGGCCA-TTTAAGC 428
consensus_4022#1 AAGCCATCCATCGTATC-GACCAGTGGGATCGATCGCATTTTCTAACCGGCACTTTANGC 532
consensus_4022#2 -GGCAAGTTGTTAAAATTGA--AACCAAAACCACTG--TTATCGAACGAAACCGCGAAAC 475
** * * * ** * * * * * ** ** *** * *
consensus_4022#0 AAGCAAGAA---CATCAGTCAATCGTTGTTGTTGCTGTAGTAGGATCTGAGCAAGAAGCA 485
consensus_4022#1 AAGCAAGCAGCCCATCATCNAATCGGAGC-GCAGNGGCGTGGACGNACGGATCTGAAGCA 591
consensus_4022#2 GGAGAAGAAGATGTTAAGCTGAGCTTGATTTTTACC-TATATATAT-TGCCTATACTGTA 533
*** * * * * * * * *
consensus_4022#0 AG-AGAATAGCTCCAGTTAGAAGCTAGGTGTAGCTAAACTATTGTTCTAGTCAATTTGCC 544
consensus_4022#1 NGCAAGGCCACGAGACATAGGCTCCAGGTCTAGA-AAGCTAAGGGTGCAGCTAAAACTCA 650
consensus_4022#2 GGAGGGGAGGGAGAAGCATAACGCTACAGCCAATGAAACTAGT-TACTAACAACGTGATA 592
* * * * * ** *** * *
consensus_4022#0 GAAGCCCC---GAAAGCGCGGATTTTGGGGCAGCGAAAACCAAAAG--GAACTGGTGTAA 599
consensus_4022#1 TAGGGCCC---ANGTCCANANNAGGCCGAACACCCG----CNAAAG--CGCGCGGAATAT 701
consensus_4022#2 ATAGTTCCTGTGCAGCCAAAAACATACAAATAGCGAAACACGAAAAATCAAATGAGTAAG 652
* ** * * * * *** * *
consensus_4022#0 AGCAAGCAATTGGGGTGCAACCCGAACGGAAGCGAGCAGTTGCGCGGAGGGAGGGTAGCG 659
consensus_4022#1 CGGGGCCANC-------------------------------------------------- 711
consensus_4022#2 TGCCGGCACTAG-----CAAGCAAAACGATAGCGAACGAT-------------------- 687
* **
consensus_4022#0 GGGCACTTTGGGCAGACAGGGNAATTCCCTTTTTTGGGCCGGNAAAAGGACCAAAGGCCG 719
consensus_4022#1 ------------------------------------------------------------
consensus_4022#2 ------------------------------------------------------------
consensus_4022#0 CTTTTTNAGAACCCGGGTTTCGGCNGNCATTGTCGAAACGATNTTGGGCTGGGAANCTCT 779
consensus_4022#1 ------------------------------------------------------------
consensus_4022#2 ------------------------------------------------------------
consensus_4022#0 GGGGGACNNCTGNNGCTGAACGTTCTCCACTTTGTAGACGACAGTCGTCTGCGTTTGGTG 839
consensus_4022#1 ------------------------------------------------------------
consensus_4022#2 ------------------------------------------------------------
consensus_4022#0 TGAGANAGAANNNCCGCACGCTGAGTTCGGGGGA 873
consensus_4022#1 ----------------------------------
consensus_4022#2 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||