These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence [AGAGATTTATTACACTAGGAGAAAAAGGAGGACATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAAC----CCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACA-GGGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGTACACACTCTCACACACACACACTCCAAAACACAGTCACC-AAATATCCGGTTTTTTGCACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGAGATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAATGTAACTTTACCCCGTANTAGTGCGCCGGGAGAGAGAGAGGAACTGGAGAAAGAGAGTAAGATTATAATTACTATTTACCACAACAGCATCCCCCTGGCGAACGTAAGAAAAAAAGTTGAAACAAACTCTTAAACATTTACACGTCCAAA] [+] EMBL BX627599 [AGAGATTTATTACACTAGGAGAAAAAGGAGGACATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAAC CCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACA GGGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGTACACACTCTCACACACACACACTCCAAAACACAGTCACC AAATATCCGGTTTTTTGCACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGAGATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAATGTAACTTTACCCCGTANTAGTG ] [+] EMBL BX468124 [ gcaaGAATCGGCACGTGGCCGAGC AAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACAGGGGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGCTGTGCACAGCCCAATCTGCGCGGGTGTTTTTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGTACACACTCTCACACACACACACTCCAAAACACAGTCACCAAAATATCCGGTTTTTTGCACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGAGATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAATGTAACTTTACCCCGTTATAGTGCGCCGGGAGAGAGAGAGGAACTGGAGAAAGAGAGTAAGATTATAATTACTATTTACCACAACAGCATCCCCCTGGCGAACGTAAGAAAAAAAGTTGAAACAAACTCTTAAACATTTACACGTCCAAA] consensusID : consensus_4025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [ATCGATTTCTCTAGGAGAAAAAGGAGGAAATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCGCCCCGGAAACAGTGGACAGCGCTGCTGGCGGGATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTGTATTTCCTCTTCGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGCAGATACTAGATAGATGGATTAGCTCAATGGACAGCGTAG] [+] EMBL BX620163 [ATCGATTTCTCTAGGAGAAAAAGGAGGAAATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCGCCCCGGAAACAGTGGACAGCGCTGCTGGCGGGATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTGTATTTCCTCTTCGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGCAGATACTAGATAGATGGATTAGCTCAATGGACAGCGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4025#0 AGAGATTTATTACACTAGGAGAAAAAGGAGGACATGTTCTAATACTCACACTGCACACAC 60 consensus_4025#1 ----ATCGATTTCTCTAGGAGAAAAAGGAGGAAATGTTCTAATACTCACACTGCACACAC 56 ** *** * ****************** *************************** consensus_4025#0 ACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACC 120 consensus_4025#1 ACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACC 116 ************************************************************ consensus_4025#0 ATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAA 180 consensus_4025#1 ATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAA 176 ************************************************************ consensus_4025#0 GAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAA 240 consensus_4025#1 GAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAA 236 ************************************************************ consensus_4025#0 ACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACAG 300 consensus_4025#1 ACTCGCCCCGGAAACAGTGG------------------------------------ACAG 260 **** ************** **** consensus_4025#0 GGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAA 360 consensus_4025#1 CGCTGCTGGCGGGATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAA 320 *********** *********************************************** consensus_4025#0 CTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTT 420 consensus_4025#1 CTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTT 380 ************************************************************ consensus_4025#0 TTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCC 480 consensus_4025#1 TT-GTATTTCCTCTTCGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCC 439 ** ************ ******************************************** consensus_4025#0 CGTACACACTCTCACACACACAC-ACTCCAAAACACAGTCACCAAATATCCGGTTTTTTG 539 consensus_4025#1 CGCAGATACTAG-ATAGATGGATTAGCTCAATGGACAG-CGTAG---------------- 481 ** * * *** * * * * * *** **** * consensus_4025#0 CACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGA 599 consensus_4025#1 ------------------------------------------------------------ consensus_4025#0 GATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAAT 659 consensus_4025#1 ------------------------------------------------------------ consensus_4025#0 GTAACTTTACCCCGTANTAGTGCGCCGGGAGAGAGAGAGGAACTGGAGAAAGAGAGTAAG 719 consensus_4025#1 ------------------------------------------------------------ consensus_4025#0 ATTATAATTACTATTTACCACAACAGCATCCCCCTGGCGAACGTAAGAAAAAAAGTTGAA 779 consensus_4025#1 ------------------------------------------------------------ consensus_4025#0 ACAAACTCTTAAACATTTACACGTCCAAA 808 consensus_4025#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||