These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence [CCGGACAGGAACCTCGAGGAGTAGCCGCAACAGCACTTTGCACACAGGCTTGCTAAAATGTTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACTACCATCAGCAAGTACGGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGCAAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGCGTTAAGGTACACTATTGCAGCCTCAACACAACGGACGTGAAAATCATTGCCGGAAAGCATGCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATCGTCGAAATCGGCCAAGACAATCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTTAAAAATCGTGACGTATGGACCGTGCCGCAGTCAGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTATGGGCACGGTACCGCGCTGCTAACGTTCGCGCTGCACTGCAATTTAAAGGAAAACGATCTAATACTGATAACGGCCGGTCCGGCCGGAATGGGACTGGCGGCGATCCGATCTGGCGGTCAGCGTGTACAAAGACGAAGGTGATTGCCGTGTGCGACACGGAGAGCAGCTCCGATCT] [+] EMBL BM585706 [CCGGACAGGAACCTCGAGGAGTAGCCGCAACAGCACTTTGCACACAGGCTTGCTAAAATGTTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACTACCATCAGCAAGTACGGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGCAAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGCGTTAAGGTACACTATTGCAGCCTCAACACAACGGACGTGAAAATCATTGCCGGAAAGCATGCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATCGTCGAAATCGGCCAAGACAATCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTTAAAAATCGTGACGTATGGACCGTGCCGCAGTCAGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTATGGGCACGGTACCGCGCTGCTAACGTTCGCGCTGCACTGCAATTTAAAGGAAAACGATCTAATACTGATAACGGCCGGTCCGGCCGGAATGGGACTGGCGGCGATCCGATCTGGCGGTCAGCGTGTACAAAGACGAAGGTGATTGCCGT ] [+] EMBL BM639561 [ ccgCACAGGCTTGCTAAAATGTTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACAACCATCAGCAAGTACGGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGCAAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGCGTTAAGGTACACTATTGCAGCCTCAACACTACGGACGTGAAAATCATTGCCGGAAAGCATGCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTCGAAATCGGCCAAGACAACCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTCTGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGAACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATAACGGCCGGTCCGGCCGGTATGGGACTGGCGGCGAT CGATCTGGCGGTCAGCGTGTACAAAG CGAAGGTGATTGCCGTGTGCGACACGGAGAGCAGCTCCGATCT] consensusID : consensus_4026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [GAATTGCCCCCGAGGGTATTATTGCCCGGAAAGGGCCAAATTGGCGGGGGAAGGCTGAACGTGCCCTNGCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTCGAAATCGGCCAAGACAACCCGCACATTTCACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTCTGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGAACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATAACGGCGGTCCGG] [+] EMBL AL930168 [GAATTGCCCCCGAGGGTATTATTGCCCGGAAAGGGCCAAATTGGCGGGGGAAGGCTGAACGTGCCCTNGCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTCGAAATCGGCCAAGACAACCCGCACATTTCACCGGGGCGATCGGGTGGTGGTGATGAACGATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTCTGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGAACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATAACGGCGGTCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4026#0 CCGGACAGGAACCTCGAGGAGTAGCCGCAACAGCACTTTGCACACAGGCTTGCTAAAATG 60 consensus_4026#1 ------------------------------------------------------------ consensus_4026#0 TTAACCAAGTTACTTCCCAGACTTTCCGGCAAATTATGCGAAACTACCATCAGCAAGTAC 120 consensus_4026#1 ------------------------------------------------------------ consensus_4026#0 GGTGGGCAGTGCATCAGTGTGTGCTACGCCCACAAGGCAGCCGTCCTGCGCGAAGCCGGC 180 consensus_4026#1 ------------------------------------------------------------ consensus_4026#0 AAACCCGTCGCACTGGAAACGGTGAAAAAGAACGAGAAGCTAAAAAACGATGAGGTGCGC 240 consensus_4026#1 ---------------------------------------------------GAATTGCCC 9 ** *** * consensus_4026#0 GTTAAGGTACACTATTGCAGCCTCAACACAACGGACGTGAAAATCATTGCCGGAAAGCAT 300 consensus_4026#1 CCGAGGGTAT--TATTGCC-------CGGAAAGGGCC---AAATTGGCGGGGGAAGGC-- 55 * **** ****** * ** ** * **** * **** ** consensus_4026#0 GCGGAGCTGAACGTGCCCTTGCCGTTCATCCCCGGGCACGAATTTTCCGGCGAAATCGTC 360 consensus_4026#1 -------TGAACGTGCCCTNGC-GTTCATCCCCGGGCACGAATTTTCCGGCGAAATTGTC 107 ************ ** ********************************* *** consensus_4026#0 GAAATCGGCCAAGACAATCCGCACCATTTCAACCGGGGCGATCGGGTGGTGGTGATGAAC 420 consensus_4026#1 GAAATCGGCCAAGACAACCCGCAC-ATTTCA-CCGGGGCGATCGGGTGGTGGTGATGAAC 165 ***************** ****** ****** **************************** consensus_4026#0 GATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTTAAAAATCGTGACGTA 480 consensus_4026#1 GATCTGCAGGACCCGAATGGGGGCCTCATCTCGGAGGCGGTCGTGAAAAATCGAGACGTC 225 ******************************************** ******** ***** consensus_4026#0 TGGACCGTGCCGCAGTCAGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTATGGGCACGGT 540 consensus_4026#1 TGGACCGTACCGCAGTCGGTGCCGCTCAAAGAAATGGCCGTCCTGCCGTACGGGCACGGA 285 ******** ******** ******************************** ******** consensus_4026#0 ACCGCGCTGCTAACGTTCGCGCTGCACTGCAATTTAAAGGAAAACGATCTAATACTGATA 600 consensus_4026#1 ACGGCGCTGCTAACGTTCGCCCTGCACTGCAATTTGAAGGAAAACGATCTGATACTGATA 345 ** ***************** ************** ************** ********* consensus_4026#0 ACGGCCGGTCCGGCCGGAATGGGACTGGCGGCGATCCGATCTGGCGGTCAGCGTGTACAA 660 consensus_4026#1 ACGGC-GGTCCGG----------------------------------------------- 357 ***** ******* consensus_4026#0 AGACGAAGGTGATTGCCGTGTGCGACACGGAGAGCAGCTCCGATCT 706 consensus_4026#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||