These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence [CCGGCCCGGCTAGCGCTGAAGGAAATCCCCGACAATTTCGACCTGCGCGATGACATGCTGCTGAAGAACCTGGATCAAAAGTCCGTCCGCAGCCTGAACGGTTGCCGAGTGACGGACGAAATCCTGCGGCTGGTACCTAACATCGACAACTTTCGCCTGGCGCTGCGAACAATTAAGCTGTGGGCAAAGCGACATGGAATATACTCCAACTCGCTCGGTTACTTTGGAGGTGTCTCCTGGGCAATGCTGGTCGCTAGAACGTGCCAGCTCTATCCGAATGCGGTGGCAGCAACGCTGGTGCATAAATTTTTCCTCGTCTTCTCCCGTTGGAAGTGGCCCCAACCGGTTCTGCTCAAACAGCCCGACAACGTGAACCTAGGATTCCAGGTTTGGGATCCGCGAGTAAATGTGCAGGATCGGTTCCACCTGATGCCGATCATAACGCCCGCGTATCCGCAGCAAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGTCATTTTATCGTATTGCTAGTCACCTCCAGCAATGCAGATGATCATTTGGAGTGGTGCGGTCTGGTGGAGTCGAAAATACGTTACCTCATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGAACCCAAAGTGCTACGAGCAGCACGAACAAAACTCGGCCACCACACTGAACGGGGGCGGACGGGTAAACCGACCCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCTCCGAGAACCTGAACGTC] [+] EMBL BM598286 [CCGGCCCGGCTAGCGCTGAAGGAAATCCCCGACAATTTCGACCTGCGCGATGACATGCTGCTGAAGAACCTGGATCAAAAGTCCGTCCGCAGCCTGAACGGTTGCCGAGTGACGGACGAAATCCTGCGGCTGGTACCTAACATCGACAACTTTCGCCTGGCGCTGCGAACAATTAAGCTGTGGGCAAAGCGACATGGAATATACTCCAACTCGCTCGGTTACTTTGGAGGTGTCTCCTGGGCAATGCTGGTCGCTAGAACGTGCCAGCTCTATCCGAATGCGGTGGCAGCAACGCTGGTGCATAAATTTTTCCTCGTCTTCTCCCGTTGGAAGTGGCCCCAACCGGTTCTGCTCAAACAGCCCGACAACGTGAACCTAGGATTCCAGGTTTGGGATCCGCGAGTAAATGTGCAGGATCGGTTCCACCTGATGCCGATCATAACGCCCGCGTATCCGCAGCAAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGTCATTTTATCGTATTGCTAGTCACC ] [+] EMBL AL933712 [ tcgcccgagTGGAG TCAACCGTGGCATGCAGATTACGGACGATA TATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGTCATTTTATCGTATTGCTAGTCACCTCCAGCAATGCAGATGATCATTTGGAGTGGTGCGGTCTGGTGGAGTCGAAAATACGTTACCTCATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGAACCCAAAGTGCTACGAGCAGCACGAACAAAACTCGGCCACCACACTGAACGGGGGCGGACGGGTAAACCGACCCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCTCCGAGAACCTGAACGTC] consensusID : consensus_4027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [AATTGGCCGAGGCGGTTCATCTGATGCCGATCATAACGCCCGCGTATCGCAGCAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGGTCATTNTTATCGTATTTGCTAGTCACCTCCAGCAATGCAGCATGATCATTTGGACGTGGTTGCGGTCTGGTGGAGTCGAAAATACGTTACCTACATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGNAACCCAAAGTGCTACGAGCAGCATCGAACAAAACTCGGCCACCACACTTGAACGGGGCGGACGGTAAACCGAACCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCATCCGAGAACCTGAACGTCG] [+] EMBL AL933671 [AATTGGCCGAGGCGGTTCATCTGATGCCGATCATAACGCCCGCGTATCGCAGCAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGGTCATTNTTATCGTATTTGCTAGTCACCTCCAGCAATGCAGCATGATCATTTGGACGTGGTTGCGGTCTGGTGGAGTCGAAAATACGTTACCTACATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGNAACCCAAAGTGCTACGAGCAGCATCGAACAAAACTCGGCCACCACACTTGAACGGGGCGGACGGTAAACCGAACCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCATCCGAGAACCTGAACGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4027#0 CCGGCCCGGCTAGCGCTGAAGGAAATCCCCGACAATTTCGACCTGCGCGATGACATGCTG 60 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 CTGAAGAACCTGGATCAAAAGTCCGTCCGCAGCCTGAACGGTTGCCGAGTGACGGACGAA 120 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 ATCCTGCGGCTGGTACCTAACATCGACAACTTTCGCCTGGCGCTGCGAACAATTAAGCTG 180 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TGGGCAAAGCGACATGGAATATACTCCAACTCGCTCGGTTACTTTGGAGGTGTCTCCTGG 240 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 GCAATGCTGGTCGCTAGAACGTGCCAGCTCTATCCGAATGCGGTGGCAGCAACGCTGGTG 300 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 CATAAATTTTTCCTCGTCTTCTCCCGTTGGAAGTGGCCCCAACCGGTTCTGCTCAAACAG 360 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 CCCGACAACGTGAACCTAGGATTCCAGGTTTGGGATCCGCGAGTAAATGTGCAGGATCGG 420 consensus_4027#1 ---------------------------------------------AATTGGCCGAGGCGG 15 *** ** * *** consensus_4027#0 TTCCACCTGATGCCGATCATAACGCCCGCGTATCCGCAGCAAAATTCCACATTCAACGTG 480 consensus_4027#1 TTC-ATCTGATGCCGATCATAACGCCCGCGTATC-GCAGCAAA-TTCCACATTCAACGTG 72 *** * **************************** ******** **************** consensus_4027#0 TCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGAC 540 consensus_4027#1 TCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGAC 132 ************************************************************ consensus_4027#0 GATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTAC 600 consensus_4027#1 GATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTAC 192 ************************************************************ consensus_4027#0 CGGTATCG-TCATTTT-ATCGTATT-GCTAGTCACCTCCAGCAATGCAG-ATGATCATTT 656 consensus_4027#1 CGGTATCGGTCATTNTTATCGTATTTGCTAGTCACCTCCAGCAATGCAGCATGATCATTT 252 ******** ***** * ******** *********************** ********** consensus_4027#0 GGA-GTGGT-GCGGTCTGGTGGAGTCGAAAATACGTTACCT-CATCCAGAACCTTGAGCG 713 consensus_4027#1 GGACGTGGTTGCGGTCTGGTGGAGTCGAAAATACGTTACCTACATCCAGAACCTTGAGCG 312 *** ***** ******************************* ****************** consensus_4027#0 CAACCAGCACATCAATCTTGCGCACGTGAA-CCCAAAGTGCTACGAGCAGCA-CGAACAA 771 consensus_4027#1 CAACCAGCACATCAATCTTGCGCACGTGNAACCCAAAGTGCTACGAGCAGCATCGAACAA 372 **************************** * ********************* ******* consensus_4027#0 AACTCGGCCACCACACTGAACGGGGGCGGACGGGTAAACCGACCCCATTCTGTTCGCTCT 831 consensus_4027#1 AACTCGGCCACCACACTTGAACGGGGCGGACGG-TAAACCGAACCCATTCTGTTCGCTCT 431 ***************** * *********** ******** ***************** consensus_4027#0 GGTTCATCGGGCTGGAGTTTGAACGC-TCCGAGAACCTGAACGTC- 875 consensus_4027#1 GGTTCATCGGGCTGGAGTTTGAACGCATCCGAGAACCTGAACGTCG 477 ************************** ****************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||