cluster # 4031

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Anopheles gambiae
cluster # 4031 cluster # 4031 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4031#0 length = 1193 sequences # 2

consensus_4031#1 length = 478 sequences # 1

consensusID : consensus_4031#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1193
fasta sequence

                              [AGGTACGAGAGTTGCCCGCNGTTGAAGCCGACAGTCAGAAGAAAGCAAGCAGCGACGAGGAACAGCTGCTGAACGACGTCAAGTCGTCACCGTCGAACTCGCGCGGTACGAAAAGCGCTGGAAACTATGCCCGTTTGCTGAACGAGCAGCAACAGGACGAAGGAACGGGGCTGGTCGACGAGCTGGACGAGTATGGACAGGAGCTGGCAGAGAATGAAACGGCCGGTGAGGAGGCAGCCGACGAGGAACGTGTGGTTGGTGTCGTTGGATCCCGAACCCGGGTCCCTAGCTCCCAGCGGCGATCGTCGGGAGGCAGTTCCGACTCCTCCGGCGGACCGTTCGATGCAACCGGGCTGCTCATATCCGCCTGCCTTGCTGTGATACTGATCGGAGCGCTCGTGTATCTGCTCCAGCGCGAGTTCAAGAAGCAGCGCATGATCCACCAACATCAGCAGATGGAACGGACAGCGTCCGAGCGTCGGGGAGCGGCAGTGGGAGGCGTCACGATGCAGTAGTAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCTTTTTTCCGCATTTCCTCCTTATTTCTCACTCTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAAAGAAAAACGATACAATTTTAACGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACACACACACATACACTCACAAATGAATCGAGCAATCGAAAAAGAAAATGCACGTGCACACAAACACACACACAGAGAATGAATGCAGCAGCATTAAGAAGAGAAGCCCTAGCAAGTAAGGATCGTTTAGTATTAAGAGCAATCAAACACAGAGACACGTAAACAAAACGTCCCCAACAAAATGCATCCAATTCCCAGTTGTTTTTTTTTTGCCATCCAACCTACTCTGCCCTACATGTGCGCTATCTTATGCTTACTCGTTTCCTTTGAAACGCGTGCTGCGTGCGTCTTAAAGGGGGATGCGAACGAGCAATCGACAATGCATCGCCCCTCAGGCTCAACGGACAGCTTACAAACGTTTCAGCGTACGAAAATGACTGAGCATAGAATTAAGCTAACCCAGCT]

[+] EMBL BX620880             [AGGTACGAGAGTTGCCCGCNGTTGAAGCCGACAGTCAGAAGAAAGCAAGCAGCGACGAGGAACAGCTGCTGAACGACGTCAAGTCGTCACCGTCGAACTCGCGCGGTACGAAAAGCGCTGGAAACTATGCCCGTTTGCTGAACGAGCAGCAACAGGACGAAGGAACGGGGCTGGTCGACGAGCTGGACGAGTATGGACAGGAGCTGGCAGAGAATGAAACGGCCGGTGAGGAGGCAGCCGACGAGGAACGTGTGGTTGGTGTCGTTGGATCCCGAACCCGGGTCCCTAGCTCCCAGCGGCGATCGTCGGGAGGCAGTTCCGACTCCTCCGGCGGACCGTTCGATGCAACCGGGCTGCTCATATCCGCCTGCCTTGCTGTGATACTGATCGGAGCGCTCGTGTATCTGCTCCAGCGCGAGTTCAAGAAGCAGCGCATGATCCACCAACATCAGCAGATGGAACGGACAGCGTCCGAGCGTCGGGGAGCGGCAGTGGGAGGCGTCACGATGCAGTAGTAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCTTTTTTCCGCATTTCCTCCTTATTTCTCACTCTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGCCAACTATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX624162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCACTCTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAAAGAAAAACGATACAATTTTAACGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACACACACACATACACTCACAAATGAATCGAGCAATCGAAAAAGAAAATGCACGTGCACACAAACACACACACAGAGAATGAATGCAGCAGCATTAAGAAGAGAAGCCCTAGCAAGTAAGGATCGTTTAGTATTAAGAGCAATCAAACACAGAGACACGTAAACAAAACGTCCCCAACAAAATGCATCCAATTCCCAGTTGTTTTTTTTTTGCCATCCAACCTACTCTGCCCTACATGTGCGCTATCTTATGCTTACTCGTTTCCTTTGAAACGCGTGCTGCGTGCGTCTTAAAGGGGGATGCGAACGAGCAATCGACAATGCATCGCCCCTCAGGCTCAACGGACAGCTTACAAACGTTTCAGCGTACGAAAATGACTGAGCATAGAATTAAGCTAACCCAGCT]




>consensus_4031#0
AGGTACGAGAGTTGCCCGCNGTTGAAGCCGACAGTCAGAAGAAAGCAAGCAGCGACGAGG
AACAGCTGCTGAACGACGTCAAGTCGTCACCGTCGAACTCGCGCGGTACGAAAAGCGCTG
GAAACTATGCCCGTTTGCTGAACGAGCAGCAACAGGACGAAGGAACGGGGCTGGTCGACG
AGCTGGACGAGTATGGACAGGAGCTGGCAGAGAATGAAACGGCCGGTGAGGAGGCAGCCG
ACGAGGAACGTGTGGTTGGTGTCGTTGGATCCCGAACCCGGGTCCCTAGCTCCCAGCGGC
GATCGTCGGGAGGCAGTTCCGACTCCTCCGGCGGACCGTTCGATGCAACCGGGCTGCTCA
TATCCGCCTGCCTTGCTGTGATACTGATCGGAGCGCTCGTGTATCTGCTCCAGCGCGAGT
TCAAGAAGCAGCGCATGATCCACCAACATCAGCAGATGGAACGGACAGCGTCCGAGCGTC
GGGGAGCGGCAGTGGGAGGCGTCACGATGCAGTAGTAGTAGCGGGGAGGCATCACGATCT
TTGACTGAGCTGTAGCAAAAGCAGCCCTCTTTTTTCCGCATTTCCTCCTTATTTCTCACT
CTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGCCAACTATGATTT
GAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAG
CAATAACAAAAGAAAAACGATACAATTTTAACGAAAACCCAACGACGAATCGAAACGCGG
GAAAACACACACACACACATACACTCACAAATGAATCGAGCAATCGAAAAAGAAAATGCA
CGTGCACACAAACACACACACAGAGAATGAATGCAGCAGCATTAAGAAGAGAAGCCCTAG
CAAGTAAGGATCGTTTAGTATTAAGAGCAATCAAACACAGAGACACGTAAACAAAACGTC
CCCAACAAAATGCATCCAATTCCCAGTTGTTTTTTTTTTGCCATCCAACCTACTCTGCCC
TACATGTGCGCTATCTTATGCTTACTCGTTTCCTTTGAAACGCGTGCTGCGTGCGTCTTA
AAGGGGGATGCGAACGAGCAATCGACAATGCATCGCCCCTCAGGCTCAACGGACAGCTTA
CAAACGTTTCAGCGTACGAAAATGACTGAGCATAGAATTAAGCTAACCCAGCT

consensusID : consensus_4031#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [GGCAAGAATCGGCACGNTGNAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCGTCTTTTCCGCATTTCCTCCTTATTTCTCACTCGTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAGAAGAAAGAACGATACAAGTTTTAANCGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACGACACGAGCACATACGACTCACAAATGAATCGAGCAAGTCGAAGANAAGAAAATGCAGCGTGCACACAANNCACAANACACAGAGNAAGTGAAATGCAGGCAGGCATTGAAGAAGAGGAAGCCCGTAGCCGAGGTCAAGGATCGTGCGTAGTATGTAAGAGCAAGTCAAAACACNAG]

[+] EMBL BX468135             [GGCAAGAATCGGCACGNTGNAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCGTCTTTTCCGCATTTCCTCCTTATTTCTCACTCGTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAGAAGAAAGAACGATACAAGTTTTAANCGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACGACACGAGCACATACGACTCACAAATGAATCGAGCAAGTCGAAGANAAGAAAATGCAGCGTGCACACAANNCACAANACACAGAGNAAGTGAAATGCAGGCAGGCATTGAAGAAGAGGAAGCCCGTAGCCGAGGTCAAGGATCGTGCGTAGTATGTAAGAGCAAGTCAAAACACNAG]




>consensus_4031#1
GGCAAGAATCGGCACGNTGNAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGC
AAAAGCAGCCCTCGTCTTTTCCGCATTTCCTCCTTATTTCTCACTCGTCTACATTCCTTC
CGGTTGTGATTGTCATCTCAACCTTCTCCCTTGGCCAACTATGATTTGAGCATAATTATT
TATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAGAAG
AAAGAACGATACAAGTTTTAANCGAAAACCCAACGACGAATCGAAACGCGGGAAAACACA
CGACACGAGCACATACGACTCACAAATGAATCGAGCAAGTCGAAGANAAGAAAATGCAGC
GTGCACACAANNCACAANACACAGAGNAAGTGAAATGCAGGCAGGCATTGAAGAAGAGGA
AGCCCGTAGCCGAGGTCAAGGATCGTGCGTAGTATGTAAGAGCAAGTCAAAACACNAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4031#0      AGGTACGAGAGTTGCCCGCNGTTGAAGCCGACAGTCAGAAGAAAGCAAGCAGCGACGAGG 60
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      AACAGCTGCTGAACGACGTCAAGTCGTCACCGTCGAACTCGCGCGGTACGAAAAGCGCTG 120
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      GAAACTATGCCCGTTTGCTGAACGAGCAGCAACAGGACGAAGGAACGGGGCTGGTCGACG 180
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      AGCTGGACGAGTATGGACAGGAGCTGGCAGAGAATGAAACGGCCGGTGAGGAGGCAGCCG 240
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      ACGAGGAACGTGTGGTTGGTGTCGTTGGATCCCGAACCCGGGTCCCTAGCTCCCAGCGGC 300
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      GATCGTCGGGAGGCAGTTCCGACTCCTCCGGCGGACCGTTCGATGCAACCGGGCTGCTCA 360
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      TATCCGCCTGCCTTGCTGTGATACTGATCGGAGCGCTCGTGTATCTGCTCCAGCGCGAGT 420
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      TCAAGAAGCAGCGCATGATCCACCAACATCAGCAGATGGAACGGACAGCGTCCGAGCGTC 480
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      GGGGAGCGGCAGTGGGAGGCGTCACGATGCAGTAGTAGTAGCGGGGAGGCATCACGATCT 540
consensus_4031#1      ----------GGCAAGAATCGGCACGNTGNAGTAG------CGGGGAGGCATCACGATCT 44
                                 *   **  ** **** ** *****      *******************

consensus_4031#0      TTGACTGAGCTGTAGCAAAAGCAGCCCTC-TTTTTTCCGCATTTCCTCCTTATTTCTCAC 599
consensus_4031#1      TTGACTGAGCTGTAGCAAAAGCAGCCCTCGTCTTTTCCGCATTTCCTCCTTATTTCTCAC 104
                      ***************************** * ****************************

consensus_4031#0      TC-TCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTG-CCAACTATGA 657
consensus_4031#1      TCGTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGGCCAACTATGA 164
                      ** ********************************************** **********

consensus_4031#0      TTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGT 717
consensus_4031#1      TTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGT 224
                      ************************************************************

consensus_4031#0      AAGCAATAACAAAAGAAAA--ACGATACAATTTT--AACGAAAACCCAACGACGAATCGA 773
consensus_4031#1      AAGCAATAACAAGAAGAAAGAACGATACAAGTTTTAANCGAAAACCCAACGACGAATCGA 284
                      ************ *  ***  ********* ***  * **********************

consensus_4031#0      AACGCGGGAAAACACAC---ACACACACATAC-ACTCACAAATGAATCGAGCAA-TCGAA 828
consensus_4031#1      AACGCGGGAAAACACACGACACGAGCACATACGACTCACAAATGAATCGAGCAAGTCGAA 344
                      *****************   **   ******* ********************* *****

consensus_4031#0      --AAAGAAAATGCA-CGTGCACACAAAC----ACACACACAGAGAATGAA-TGCAGC--A 878
consensus_4031#1      GANAAGAAAATGCAGCGTGCACACAANNCACAANACACAGAGNAAGTGAAATGCAGGCAG 404
                         *********** ***********      * ***** **  * **** *****    

consensus_4031#0      GCATT-AAGAAGAG-AAGCCC-TAGC--AAGT-AAGGATCGTT--TAGTAT-TAAGAGCA 929
consensus_4031#1      GCATTGAAGAAGAGGAAGCCCGTAGCCGAGGTCAAGGATCGTGCGTAGTATGTAAGAGCA 464
                      ***** ******** ****** ****  * ** *********   ****** ********

consensus_4031#0      ATCAAACACAGAGACACGTAAACAAAACGTCCCCAACAAAATGCATCCAATTCCCAGTTG 989
consensus_4031#1      AGTCAAAACACNAG---------------------------------------------- 478
                      *   ** ***                                                  

consensus_4031#0      TTTTTTTTTTGCCATCCAACCTACTCTGCCCTACATGTGCGCTATCTTATGCTTACTCGT 1049
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      TTCCTTTGAAACGCGTGCTGCGTGCGTCTTAAAGGGGGATGCGAACGAGCAATCGACAAT 1109
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      GCATCGCCCCTCAGGCTCAACGGACAGCTTACAAACGTTTCAGCGTACGAAAATGACTGA 1169
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      GCATAGAATTAAGCTAACCCAGCT 1193
consensus_4031#1      ------------------------