These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 859 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTACATGAAAAACATGACGTACGCCAGCATGACAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGTGTCCTTTGTAGACCCTTTACGCAG-ACAAAACCAAAGCCCACCAACTGCCAATAACAAACATTAATCCTTTTTTATCTTCTCTCTTAAGCATTTCATGCTTTCGTCTGACAATTTTCGAAACCAGCTGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTGGATGATCGCGCGCTCCGC-C-CCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTGCACGTGC-GGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCAACTTCGTCGGTGTGTGGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCACGCTTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGTTCCTTTCCACCACCGCTACGGTAAGTGTGGAAGTCGACCACAACCGGCGCTGGTGCCAGTTCCGACGCCGAAGTGGTCCGAATCGCACGCTTTTCGCGCCGTTTGTTCATTCGCTCCATTATGCCCGGAGGCGGCCGGTGCCGGC] [+] EMBL CNS09FXJ [TTTTTTTTTTTTTTTTTTTTTTACATGAAAAACATGACGTACGCCAGCATGACAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGTGTCCTTTGTAGACCCTTTACGCAG ACAAAACCAAAGCCCACCAACTGCCAATAACAAACATTAATCCTTTTTTATCTTCTCTCTTAAGCATTTCATGCTTTCGTCTGACAATTTTCGAAACCAGCTGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTGGATGATCGCGCGCTCCGC C CCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTGCACGTGC GGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCAACTTCGTCGGTGTGTGGCGCCCCGTT ] [+] EMBL CNS09OUJ [ CAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGTGTCCTTTGTAGACCCTTTACGCAGTACAAAACCAAAGCCCACCAACTGCCAATAACAAACATTAATCCTTTTTTATCTTCTCTCTTAAGCATTTCATGCTTTCGTCTGACAATTTTCGAAACCAGCTGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTGGATGATCGCGCGCTCCGCACACCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTGCACGTGCGGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCTCCTTCGTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCACGCTTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGTTCCTTTCCACCACCGCTACGGTAAGTGTGGAAGTCGACCACAACCGGCGCTGGTGCCAGTTCCGACGCCGAAGTGGTCCGAATCGCACGCTTTTCGCGCCGTTTGTTCATTCGCTCCATTATGCCCGGAGGCGGCCGGTGCCGGC] consensusID : consensus_4032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence [ACGNGTTCGGTCTAGCAATGACAAGTTAATNATCTGTTACAGGTTNCGTAGGGTNATNCCCTCCNACGGTGTCCNTTTTGGTAGACCCTTGTTTAACGCAGTTACCTAAATACCCANAAGGCCCCCAACCTAAACCTGCCAAATTAACAAACCANTTAAATCCCGTGTCTGTTGTATCCGTTCTCTCCTTAAAGCATGTGCAATGCTTTTCGGTCTTGACAATTTTTCCAAACCAGCTGTTCGCTACCTGTCTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCACAGGATGATCGCGCGCCCCCGCCCCTAGGAACCGTACTCCACCATCGCACACTTCCAGGCGTGCACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATGCGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGAACCGTTCAGTTGTGCTCCTTCGTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCAGCGCTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGCTCCTTCCCGCCACCGCTACGGTACGTGTGGAAGTCGACCACAACCGGCGATGGTGCCGGTTCCGACGCCGAAGTGGTCCGAATCGCACCANCGTGCCGAATTCTGC] [-] EMBL BX468142 [ACGNGTTCGGTCTAGCAATGACAAGTTAATNATCTGTTACAGGTTNCGTAGGGTNATNCCCTCCNACGGTGTCCNTTTTGGTAGACCCTTGTTTAACGCAGTTACCTAAATACCCANAAGGCCCCCAACCTAAACCTGCCAAATTAACAAACCANTTAAATCCCGTGTCTGTTGTATCCGTTCTCTCCTTAAAGCATGTGCAATGCTTTTCGGTCTTGACAATTTTTCCAAACCAGCTGTTCGCTACCTGTCTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCACAGGATGATCGCGCGCCCCCGCCCCTAGGAACCGTACTCCACCATCGCACACTTCCAGGCGTGCACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAAGTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATGCGGTATAGCGTTGCTTCTGCTGTTGCTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGAACCGTTCAGTTGTGCTCCTTCGTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTTGTTGCCGTTGCGATCCTTGCGCAGCGCTTTCGGGCTTGACGGTGGCGTAAAGAACGCATCCTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGACCCGTTCAGCTGGAGCGGCTCCTTCCCGCCACCGCTACGGTACGTGTGGAAGTCGACCACAACCGGCGATGGTGCCGGTTCCGACGCCGAAGTGGTCCGAATCGCACCANCGTGCCGAATTCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4032#0 ---------TTTTTTTTTTTTTTTTTTTTTTACATGAAAAACATGACGTACGCCAGCATG 51 consensus_4032#1 ACGNGTTCGGTCTAGCAATGACAAGTTAATNATCTGTTACAGGTTNCGTAGGGTNATNCC 60 * * * ** * * ** * * * **** * consensus_4032#0 ACAATTATATTGTTACAGTTCGTAGGTTATCCCTCCACGT-GTCCTTTGTAGACCCTTTA 110 consensus_4032#1 -CTCCNACGGTGTCCNTTTTGGTAGACCCTTGTTTAACGCAGTTACCTAAATACCCANAA 119 * * *** ** **** * * *** ** * * **** * consensus_4032#0 CGCAGACAAAACCAAAGCCCACCAACT--GCCAATAAC--AAACATTAATCCTTTTTTAT 166 consensus_4032#1 GGCC--CCCAACCTAAACCTGCCAAATTAACAAACCANTTAAATCCCGTGTCTGTTGTAT 177 ** * **** ** ** **** * * ** * *** ** ** *** consensus_4032#0 C--TTCTCTCTT--AAGCATTTC--ATGCTTTC--GTCT-GACAATTTT-CGAAACCAGC 216 consensus_4032#1 CCGTTCTCTCCTTAAAGCATGTGCAATGCTTTTCGGTCTTGACAATTTTTCCAAACCAGC 237 * ******* * ****** * ******* **** ********* * ******** consensus_4032#0 TGTTCGCTACCTGTTTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCGCTG 276 consensus_4032#1 TGTTCGCTACCTGTCTTATTCGAGATTCGAGACACAATCGTTCGAGACACAATCCCACAG 297 ************** ***************************************** * * consensus_4032#0 GATGATCGCGCGCTCC-GCCCCTAGGAACCGTACTCCTCCATCGCACACTTCCAGGCGTG 335 consensus_4032#1 GATGATCGCGCGCCCCCGCCCCTAGGAACCGTACTCCACCATCGCACACTTCCAGGCGTG 357 ************* ** ******************** ********************** consensus_4032#0 CACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAA 395 consensus_4032#1 CACGTGCGGATGCGTCTGCGGATCGATCTCGACCATTTTCAGCACGTTCCACACGTCAAA 417 ************************************************************ consensus_4032#0 GTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATACGGTATAGCGTTGCTTCTGCTGTTG 455 consensus_4032#1 GTCCTGCTTGGTTGGCATCGTTTCGGAAATGAATGCGGTATAGCGTTGCTTCTGCTGTTG 477 ********************************** ************************* consensus_4032#0 CTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGATCCGTTCAGTTGTGCAACTTC 515 consensus_4032#1 CTCCTGCCGCTCCTCCACCACCGGGCTCGTATCCATCGAACCGTTCAGTTGTGCTCCTTC 537 *************************************** ************** **** consensus_4032#0 GTCGGTGTGTGGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTT 575 consensus_4032#1 GTCGGTGTGTAGCGCCCCGTTCAGCAAACCATCCGTCGTCTCGTGGTGGCCGCTGCTGTT 597 ********** ************************************************* consensus_4032#0 GTTGCCGTTGCGATCCTTGCGCACGCTTTTCGGGCTTGACGGTGGCGTAAAGAACGCATC 635 consensus_4032#1 GTTGCCGTTGCGATCCTTGCGCAGCGCTTTCGGGCTTGACGGTGGCGTAAAGAACGCATC 657 *********************** ********************************* consensus_4032#0 CTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGA 695 consensus_4032#1 CTCTTCCTGCTCGTTCTCGGAATCGCTGCAGCTGTAGTACAGCTCTTCCTCGTCCTTCGA 717 ************************************************************ consensus_4032#0 CCCGTTCAGCTGGAGCGGTTCCTTTCCACCACCGCTACGGTAAGTGTGGAAGTCGACCAC 755 consensus_4032#1 CCCGTTCAGCTGGAGCGGCTCCTTCCCGCCACCGCTACGGTACGTGTGGAAGTCGACCAC 777 ****************** ***** ** ************** ***************** consensus_4032#0 AACCGGCGCTGGTGCCAGTTCCGACGCCGAAGTGGTCCGAATCGCACGCTTTTCGCGCCG 815 consensus_4032#1 AACCGGCGATGGTGCCGGTTCCGACGCCGAAGTGGTCCGAATCGCACCANCGTGCCGAAT 837 ******** ******* ****************************** * ** consensus_4032#0 TTTGTTCATTCGCTCCATTATGCCCGGAGGCGGCCGGTGCCGGC 859 consensus_4032#1 TCTGC--------------------------------------- 842 * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||