These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [ATCGNCCGAGGTTAAGATTATTTTTACACTATCAAACAGCAGTTTATTTATGCTCGCACTTTTAAGCTGTGAGCAGCAATTGTGAGAAATTAAAAACAAACCCCATTAATGTACAGCTTGCTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGGCCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATAGGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTTGTNTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCGCTTGTATTCTAGCACATGNTTCATCTGCATGTACTTGCACANATACACACGAATATTCGANTTTCAAATTGNCTGCTGCTCGCATGCACTGCCTCTTGTCCCTAATACANACCAAATCACGCGGTACAACCTTTCTACTGGTCAACGNCTACGAACAACTNCTNTCCTTACCAATCATGTCACCNACATCCATATAACAGACCTGCGCACAGTGGTATAACCCTAAATCTAACCANNATAAGGTTTTCACGCCCTATTCACTAATATCAGCCCGNAACTTNGCTATAGTATNAAAATCTATTATGAANTGGCACACACCCANCTATACACNCATAACCCACTTCGCACATTGGCNAATCANATATCNTATT] [+] EMBL AL934651 [ATCGNCCGAGGTTAAGATTATTTTTACACTATCAAACAGCAGTTTATTTATGCTCGCACTTTTAAGCTGTGAGCAGCAATTGTGAGAAATTAAAAACAAACCCCATTAATGTACAGCTTGCTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGGCCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATAGGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTTGTNTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCGCTTGTATTCTAGCACATGNTTCATCTGCATGTACTTGCACANATACACACGAATATTCGANTTTCAAATTGNCTGCTGCTCGCATGCACTGCCTCTTGTCCCTAATACANACCAAATCACGCGGTACAACCTTTCTACTGGTCAACGNCTACGAACAACTNCTNTCCTTACCAATCATGTCACCNACATCCATATAACAGACCTGCGCACAGTGGTATAACCCTAAATCTAACCANNATAAGGTTTTCACGCCCTATTCACTAATATCAGCCCGNAACTTNGCTATAGTATNAAAATCTATTATGAANTGGCACACACCCANCTATACACNCATAACCCACTTCGCACATTGGCNAATCANATATCNTATT] consensusID : consensus_4038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [AATGTACAGCTTGCTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGGCCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATAGGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTGTTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCGTTGTATTCTAGAATGTTCATTGATGTATTGCAACAAATAAAAAATATTGATTTTCAATTGCTGTGTTGCACTGATGCTTGTTCTATAAACAATACGGTAAACTTTACTGTAAGCTAGAAATTTTCTCTTAGAATATGTTTTGAATCATATAAAGACCTGGACAGTGTTACCTAAATCTAACAGTAAGGTTTCAGCCTATTCACTATTCAGCCGAATTTGCTTGTAGTAAAATCTATTTTGAACATGGTAAAACAATATAACAATAGCCATTGAACATGGGAATCCGTATCGTCTTTTAACTATACTTATACCATTTGAGTCA] [+] EMBL AL931462 [AATGTACAGCTTGCTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGGCCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATAGGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTGTTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCGTTGTATTCTAGAATGTTCATTGATGTATTGCAACAAATAAAAAATATTGATTTTCAATTGCTGTGTTGCACTGATGCTTGTTCTATAAACAATACGGTAAACTTTACTGTAAGCTAGAAATTTTCTCTTAGAATATGTTTTGAATCATATAAAGACCTGGACAGTGTTACCTAAATCTAACAGTAAGGTTTCAGCCTATTCACTATTCAGCCGAATTTGCTTGTAGTAAAATCTATTTTGAACATGGTAAAACAATATAACAATAGCCATTGAACATGGGAATCCGTATCGTCTTTTAACTATACTTATACCATTTGAGTCA] consensusID : consensus_4038#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [AATCGCCCGAGGNNAAATTAAAACAACCCCATTAATGTACAGCTTGCTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGGCCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATAGGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTTGTTTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCGTTGTATTCTAGAATGTTCATTGATGTATTGCAACAAATAAAAAATATTGATTTTCAAAAAAAAAAAAAAAAAA] [+] EMBL AL933056 [AATCGCCCGAGGNNAAATTAAAACAACCCCATTAATGTACAGCTTGCTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGGCCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATAGGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTTGTTTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCGTTGTATTCTAGAATGTTCATTGATGTATTGCAACAAATAAAAAATATTGATTTTCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4038#0 ATCGNCCGAGGTTAAGATTATTTTTACACTATCAAACAGCAGTTTATTTATGCTCGCACT 60 consensus_4038#2 ------------------------------------------------------------ consensus_4038#1 ------------------------------------------------------------ consensus_4038#0 TTTAAGCTGTGAGCAGCAATTGTGAGAAATTAAAAACAAACCCCATTAATGTACAGCTTG 120 consensus_4038#2 -------------AATCGCCCGAGGNNAAATTAAAACAA-CCCCATTAATGTACAGCTTG 46 consensus_4038#1 -----------------------------------------------AATGTACAGCTTG 13 ************* consensus_4038#0 CTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGG 180 consensus_4038#2 CTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGG 106 consensus_4038#1 CTAAATTGCACACTGCATGATGGTGTTCTACTTTTTCTGGATGATCACCTACTGAATTGG 73 ************************************************************ consensus_4038#0 CCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATA 240 consensus_4038#2 CCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATA 166 consensus_4038#1 CCTATATAGGCTTCCTAGACTTGTTAGTACCACACAACCGGTTCATCAGTCCTTGCTATA 133 ************************************************************ consensus_4038#0 GGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTT 300 consensus_4038#2 GGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTT 226 consensus_4038#1 GGGTGTAATTCATGACACGGTTATTATGATTTTAGCGTTTATTTTAGATGCTGTGTGTTG 193 *********************************************************** consensus_4038#0 GTNTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCGCTTGTATTCTAGCACATGNTT 360 consensus_4038#2 GTTTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCG-TTGTATTCTAGAAT---GTT 282 consensus_4038#1 --TTGTTAAAACTTTGAGTGAATCAGATTAATGTGTGCG-TTGTATTCTAGAAT---GTT 247 ************************************ *********** * ** consensus_4038#0 CATCTGCATGTACTTGCACANATACACACGAATATTCGANTTTCAAATTGNCTGCTGCTC 420 consensus_4038#2 CATTG--ATGTATTGCAACAAATAAA---AAATATT-GATTTTCAAAAAAAAAAAAAAAA 336 consensus_4038#1 CATTG--ATGTATTGCAACAAATAAA---AAATATT-GATTTTCAATTGCTGTGTTGCAC 301 *** ***** * *** *** * ****** ** ****** consensus_4038#0 GCATGCACTGCCTCTTGTCCCTAATACANACCAAATCACGCGGTACAACCTTTCTACTGG 480 consensus_4038#2 AA---------------------------------------------------------- 338 consensus_4038#1 TGATGCTTGTTCTATAAACAATACGGTAAACTTTACTGTAAGCTAGAAATTTTCTCTTAG 361 consensus_4038#0 TCAACGNCTACGAACAACTNCTNTCCTTACCAATCATGTCACCNACATCCATATAACAGA 540 consensus_4038#2 ------------------------------------------------------------ consensus_4038#1 AATATGTTTTGAATCATATAAAGACCTGGACA---GTGTTACCTAAATCTAACAGTAAGG 418 consensus_4038#0 CCTGCGCACAGTGG-TATAACCCTAAATCTAACCANNATAAGGTTTTCACGCCCTATTCA 599 consensus_4038#2 ------------------------------------------------------------ consensus_4038#1 TTTCAGCCTATTCACTATTCAGCCGAATTTGCTTGTAGTAAAATCT--ATTTTGAACATG 476 consensus_4038#0 CTAATATCAGCCCGNAACTTNGCTATAGTATNAAAATCTATTATGAANTGGCACACACCC 659 consensus_4038#2 ------------------------------------------------------------ consensus_4038#1 GTAAAACAATATAACAATAGCCATTGAACATGGGAATCCGTATCGTCTTTTAACTATACT 536 consensus_4038#0 ANCTATACACNCATAACCCACTTCGCACATTGGCNAATCANATATCNTATT 710 consensus_4038#2 --------------------------------------------------- consensus_4038#1 TATACCATTTGAGTCA----------------------------------- 552 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||