These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence [CCGCCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACAGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATTCAACCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGAAACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTATTGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGTGCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGCAGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGGTGGTGCCGGTGGGGCAGCAGCAAGCGTCCGCCGGACAGCAGCAGCTCGTTGTGGTAAGCAAGATCGTTGCTCGATTTTGCATATAATAACTTAAGCTATTATTAATTATTTATTTTTATTTTTTTATTGCTTTTGCATTTTTATT] [+] EMBL BM625755 [CCGCCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACAGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATTCAACCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGAAACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTATTGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGTGCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGCAGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGG ] [+] EMBL BM655983 [ ccgCCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGAAACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTATTGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGTGCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGCAGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGGTGGTGCCGGTGGGGCAGCAGCAAGCGTCCGCCGGACAGCAGCAGCTCGTTGTGGTAAGCAAGATCGTTGCTCGATTTTGCATATAATAACTTAAGCTATTATTAATTATTTATTTTTATTTTTTTATTGCTTTTGCATTTTTATT] consensusID : consensus_4042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGACCGCCACACGCACAGCGGTGTCAATCCGAACGCGTCCAACACCACCATCATCACGACCAACACCGTCGTGACGTCGAACGCGCAGCAGCAGGCGCAGCAGCAGGCCCAGCAGCAGGCCCAGGTCCAGAGCCAGCAGCCGCACCAGCAGCAGCACATCGAGGTGAAGCAGATCCAGCACTACCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACGGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGATATGAAAGTAGAAGAGTACCATCCGATGGTTGAGACCGTGGTGAACGGTGGTGACAGCGCGATCATGGCGACCAACAACCCCATAATACAAAACTCTTCCTTTCCAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATACAACCGCAAAGCCCTCCCCAGCAGCACCAGCAACAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAGCAAAA] [+] EMBL BM588200 [CCGACCGCCACACGCACAGCGGTGTCAATCCGAACGCGTCCAACACCACCATCATCACGACCAACACCGTCGTGACGTCGAACGCGCAGCAGCAGGCGCAGCAGCAGGCCCAGCAGCAGGCCCAGGTCCAGAGCCAGCAGCCGCACCAGCAGCAGCACATCGAGGTGAAGCAGATCCAGCACTACCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCGCCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGTGTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCGACAAGAGCCTTATGACGGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTCCGGCCGTCAATCAAGATATGAAAGTAGAAGAGTACCATCCGATGGTTGAGACCGTGGTGAACGGTGGTGACAGCGCGATCATGGCGACCAACAACCCCATAATACAAAACTCTTCCTTTCCAGTACAAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATACAACCGCAAAGCCCTCCCCAGCAGCACCAGCAACAGCTGCAACAGGCGCAGGTTGTGCAGCAGCACCAAACCGTCGTACAGCAGCAGCAGCAGCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4042#0 ------------------------------------------------------------ consensus_4042#1 CCGACCGCCACACGCACAGCGGTGTCAATCCGAACGCGTCCAACACCACCATCATCACGA 60 consensus_4042#0 ------------------------------------------------------------ consensus_4042#1 CCAACACCGTCGTGACGTCGAACGCGCAGCAGCAGGCGCAGCAGCAGGCCCAGCAGCAGG 120 consensus_4042#0 ------------------------------------------------------------ consensus_4042#1 CCCAGGTCCAGAGCCAGCAGCCGCACCAGCAGCAGCACATCGAGGTGAAGCAGATCCAGC 180 consensus_4042#0 -CCGCCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCG 59 consensus_4042#1 ACTACCAGGGCCAGCAGCAGGTGCAGGACGTGTCGAACGGTAACATCATCACGACGATCG 240 * ******************************************************** consensus_4042#0 CCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGT 119 consensus_4042#1 CCGCCACCGGCCAGGGCTCGCCCGAAAACGCGGGCAAGCCGCAGTTCGCGTGCCGCGAGT 300 ************************************************************ consensus_4042#0 GTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCG 179 consensus_4042#1 GTGGCAGCGCGTTCAACAGCCGGGAAGCGCTGGCACTCCATCTGCGCCTGCACACCGGCG 360 ************************************************************ consensus_4042#0 ACAAGAGCCTTATGACAGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTC 239 consensus_4042#1 ACAAGAGCCTTATGACGGACCTGTGTGCGCTGACCGCGGCCCTGCCCGGCCACCTGTTTC 420 **************** ******************************************* consensus_4042#0 CGGCCGTCAATCAAG---TACAAATA-ATTACCTCCTCGGGGCAGGTGGTGCAGCAGATT 295 consensus_4042#1 CGGCCGTCAATCAAGATATGAAAGTAGAAGAGTACCATCCGATGGTTGAGACCGTGG--T 478 *************** * ** ** * * ** * * ** * * * * consensus_4042#0 CAACCGCAAAGTCCTCCCCAGCAGCACCAGCAGCAGCTGCAACAGGCGCAGGTTGTGCAG 355 consensus_4042#1 GAACGGTGGTGACAGCGCGATCATGGCGACCAACAACCCCATAATACAAAACTCTTCCTT 538 *** * * * * * * ** * * ** ** * ** * * * * * * consensus_4042#0 --CAGCACCAAACCGTCGTACAGCAGCAGCAGCAAAACCAGCAGCAACAGATCCAGCACC 413 consensus_4042#1 TCCAGTAC-AAATAATTACCTCCTCGGGGCAGGTGGTGCAGCAGATACAACCGCAAAGCC 597 *** ** *** * * **** ****** *** ** ** consensus_4042#0 AGCAGCAGCAGCAGCAACAGCAGCAGCAGCACCAGCATCAGCAGCAGCAGCAGCAGACGA 473 consensus_4042#1 CTCCCCAGCAGCACCAGCAACAGCTGCAACA--GGCGCAGGTTGT-GCAGCAGCA----- 649 * ******** ** ** **** *** ** ** * * ********* consensus_4042#0 AACCGAAATCCCACTACTGCACCCACTGCGGCAAGGGTTTTGCGGCCAAGCACGGACTAT 533 consensus_4042#1 ---CCAAACCGTCGTACAGCAGCAGCAGCAGCAAAA------------------------ 682 * *** * *** *** * * ** **** consensus_4042#0 TGCTGCACAACCGCCGCCACCCGAACGGTGGCTGCACGGTGCGGACGCACGTGTGCGAGT 593 consensus_4042#1 ------------------------------------------------------------ consensus_4042#0 GCGGTAAGGCGTTCTTCCAGAAGAACCATCTGATGCTGCACCAGCGCCAGCATCTGGAGC 653 consensus_4042#1 ------------------------------------------------------------ consensus_4042#0 AGAATCAGCGCAGTGGTGGTGGCGGGGCGGCTGGTGGTGCCGGTGGGGCAGCAGCAAGCG 713 consensus_4042#1 ------------------------------------------------------------ consensus_4042#0 TCCGCCGGACAGCAGCAGCTCGTTGTGGTAAGCAAGATCGTTGCTCGATTTTGCATATAA 773 consensus_4042#1 ------------------------------------------------------------ consensus_4042#0 TAACTTAAGCTATTATTAATTATTTATTTTTATTTTTTTATTGCTTTTGCATTTTTATT 832 consensus_4042#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||