cluster # 4049

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Anopheles gambiae
cluster # 4049 cluster # 4049 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4049#0 length = 712 sequences # 1

consensus_4049#1 length = 631 sequences # 1
consensus_4049#2 length = 87 sequences # 1

consensusID : consensus_4049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [AGATTCAAAAAAAGATTTAAAAAACAGTTAAACAAATCATCCAAACCCTTTACATCAATTAAATATAAGATCAAATATAAATTTGTTAAATCATGGTACGCTTCGAACTATAATGATTTTTGCCTATTTTTCATTTAATTTTATATCTTGATATCTTTGGATTTTGATTTCATGTTTAAAAATTAATAGCTCGAAAAAATGGATATGCAAATCTGCTCAGAACGGAGCGTACACTTAATAAAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAGTTGATGTAGTTTAAATCAATGAGGTCCAACAGAAGAAAAAAAAATCGATCGATACACAATTCTTGACACAATGGCAACGAAAAAAACGAAGACAGAAACGAACACGACACCGTATTAGAAAACCAAACTAAATTCTAATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGCGAGCTAACACGCAATCAATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAGCTAGCAACAGGACAGTATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAGTAATTCAGGAATCGGCCTGCCACCGGGCAGCGTTCAACAAATCAACCACTGCCATTTTCAAACCTCTCGATAGCTGGACGTAGATATTTAGAACCTTGTATCGTGTATCGTGTTTAAACATATTTCGA]

[+] EMBL BX613732             [AGATTCAAAAAAAGATTTAAAAAACAGTTAAACAAATCATCCAAACCCTTTACATCAATTAAATATAAGATCAAATATAAATTTGTTAAATCATGGTACGCTTCGAACTATAATGATTTTTGCCTATTTTTCATTTAATTTTATATCTTGATATCTTTGGATTTTGATTTCATGTTTAAAAATTAATAGCTCGAAAAAATGGATATGCAAATCTGCTCAGAACGGAGCGTACACTTAATAAAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAGTTGATGTAGTTTAAATCAATGAGGTCCAACAGAAGAAAAAAAAATCGATCGATACACAATTCTTGACACAATGGCAACGAAAAAAACGAAGACAGAAACGAACACGACACCGTATTAGAAAACCAAACTAAATTCTAATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGCGAGCTAACACGCAATCAATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAGCTAGCAACAGGACAGTATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAGTAATTCAGGAATCGGCCTGCCACCGGGCAGCGTTCAACAAATCAACCACTGCCATTTTCAAACCTCTCGATAGCTGGACGTAGATATTTAGAACCTTGTATCGTGTATCGTGTTTAAACATATTTCGA]




>consensus_4049#0
AGATTCAAAAAAAGATTTAAAAAACAGTTAAACAAATCATCCAAACCCTTTACATCAATT
AAATATAAGATCAAATATAAATTTGTTAAATCATGGTACGCTTCGAACTATAATGATTTT
TGCCTATTTTTCATTTAATTTTATATCTTGATATCTTTGGATTTTGATTTCATGTTTAAA
AATTAATAGCTCGAAAAAATGGATATGCAAATCTGCTCAGAACGGAGCGTACACTTAATA
AAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAGTTGATGTAGTTTAAAT
CAATGAGGTCCAACAGAAGAAAAAAAAATCGATCGATACACAATTCTTGACACAATGGCA
ACGAAAAAAACGAAGACAGAAACGAACACGACACCGTATTAGAAAACCAAACTAAATTCT
AATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGCGAGCTAACACGCAATC
AATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAGCTAGCAACAGGACAGT
ATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAGTAATTCAGGAATCGGC
CTGCCACCGGGCAGCGTTCAACAAATCAACCACTGCCATTTTCAAACCTCTCGATAGCTG
GACGTAGATATTTAGAACCTTGTATCGTGTATCGTGTTTAAACATATTTCGA

consensusID : consensus_4049#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [AGAATCCNCACGAGGTTAAATATAGCACGCAATAATGGATATGCAAATCTGCTCAGAACGGAGCGTACACTTGATGGAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAGTTGATGTAGTTTAAATCAATGAGGTCCAACAGAAGAAAAAAAATCGATCGATACACAATTTTTGACACAATGGCAACGAAAAAAAACGAAGACAGAAACGAACACGACACCGTATTAGAAAACCAAACTAAATTCTAATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGCGAGCTAACACGCAATCAATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAGCTAGCAACAGGACAGTATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAGTAATTCAGGAATCGGCCTGCCACCGGGCAGCGTTCAACAAATCAAGCCACTGCCATTTGTCAAACCTCTCGATAGCTGGACGTACGATCTTTAGAACCTTGTATCGTGCATCGTGTTTAAACGAAATATTCCGAGTNGATCATCTCAGAAACGAAAGTTAGGAACATCTGATCAAGACCATACAGGCGGACCGAGCCGAGCGGAAGGGGTG]

[+] EMBL BX466474             [AGAATCCNCACGAGGTTAAATATAGCACGCAATAATGGATATGCAAATCTGCTCAGAACGGAGCGTACACTTGATGGAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAGTTGATGTAGTTTAAATCAATGAGGTCCAACAGAAGAAAAAAAATCGATCGATACACAATTTTTGACACAATGGCAACGAAAAAAAACGAAGACAGAAACGAACACGACACCGTATTAGAAAACCAAACTAAATTCTAATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGCGAGCTAACACGCAATCAATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAGCTAGCAACAGGACAGTATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAGTAATTCAGGAATCGGCCTGCCACCGGGCAGCGTTCAACAAATCAAGCCACTGCCATTTGTCAAACCTCTCGATAGCTGGACGTACGATCTTTAGAACCTTGTATCGTGCATCGTGTTTAAACGAAATATTCCGAGTNGATCATCTCAGAAACGAAAGTTAGGAACATCTGATCAAGACCATACAGGCGGACCGAGCCGAGCGGAAGGGGTG]




>consensus_4049#1
AGAATCCNCACGAGGTTAAATATAGCACGCAATAATGGATATGCAAATCTGCTCAGAACG
GAGCGTACACTTGATGGAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAG
TTGATGTAGTTTAAATCAATGAGGTCCAACAGAAGAAAAAAAATCGATCGATACACAATT
TTTGACACAATGGCAACGAAAAAAAACGAAGACAGAAACGAACACGACACCGTATTAGAA
AACCAAACTAAATTCTAATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGC
GAGCTAACACGCAATCAATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAG
CTAGCAACAGGACAGTATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAG
TAATTCAGGAATCGGCCTGCCACCGGGCAGCGTTCAACAAATCAAGCCACTGCCATTTGT
CAAACCTCTCGATAGCTGGACGTACGATCTTTAGAACCTTGTATCGTGCATCGTGTTTAA
ACGAAATATTCCGAGTNGATCATCTCAGAAACGAAAGTTAGGAACATCTGATCAAGACCA
TACAGGCGGACCGAGCCGAGCGGAAGGGGTG

consensusID : consensus_4049#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 87
fasta sequence

                              [AAAAAAAAGCGAGCGAGACACAAAGCCGGGACACAAGGGCAACGAAAAAAACGAAGACAGAAACGAACACGACACCGGAACAGAAAA]

[+] EMBL BX613784             [AAAAAAAAGCGAGCGAGACACAAAGCCGGGACACAAGGGCAACGAAAAAAACGAAGACAGAAACGAACACGACACCGGAACAGAAAA]




>consensus_4049#2
AAAAAAAAGCGAGCGAGACACAAAGCCGGGACACAAGGGCAACGAAAAAAACGAAGACAG
AAACGAACACGACACCGGAACAGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4049#0      AGATTCAAAAAAAGATTTAAAAAACAGTTAAACAAATCATCCAAACCCTTTACATCAATT 60
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      ------------------------------------------------------------
                                                                                  

consensus_4049#0      AAATATAAGATCAAATATAAATTTGTTAAATCATGGTACGCTTCGAACTATAATGATTTT 120
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      ------------------------------------------------------------
                                                                                  

consensus_4049#0      TGCCTATTTTTCATTTAATTTTATATCTTGATATCTTTGGATTTTGATTTCATGTTTAAA 180
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      --------------------------------------------AGAATCCNCACGAGGT 16
                                                                                  

consensus_4049#0      AATTAATAGCTCGAAAAAATGGATATGCAAATCTGCTCAGAACGGAGCGTACACTTAATA 240
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      TAAATATAGCACGCAATAATGGATATGCAAATCTGCTCAGAACGGAGCGTACACTTGATG 76
                                                                                  

consensus_4049#0      AAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAGTTGATGTAGTTTAAAT 300
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      GAATTTCCTCCACTGTATTACACTAGCCGTAGAGTCGTATGTAGTTGATGTAGTTTAAAT 136
                                                                                  

consensus_4049#0      CAATGAGGTCCAACAGAAGAAAAAAAAATCGATCGATACACAATTCTTG-ACACAATGGC 359
consensus_4049#2      --------------------AAAAAAAAGCGAGCGAGACACAAAGCCGGGACACAAGGGC 40
consensus_4049#1      CAATGAGGTCCAACAGAAG-AAAAAAAATCGATCGATACACAATTTTTG-ACACAATGGC 194
                                          ******** *** *** ******     * ****** ***

consensus_4049#0      AACGAAAAAAA-CGAAGACAGAAACGAACACGACACCGTATTAGAAAACCAAACTAAATT 418
consensus_4049#2      AACGAAAAAAA-CGAAGACAGAAACGAACACGACACCGGAACAGAAAA------------ 87
consensus_4049#1      AACGAAAAAAAACGAAGACAGAAACGAACACGACACCGTATTAGAAAACCAAACTAAATT 254
                      *********** ************************** *  ******            

consensus_4049#0      CTAATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGCGAGCTAACACGCAA 478
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      CTAATGGCATGTGGTATGTATCTTTAGAGGAAGCTTCCGCGTCAGCGAGCTAACACGCAA 314
                                                                                  

consensus_4049#0      TCAATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAGCTAGCAACAGGACA 538
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      TCAATAGCTAAATATTAACGTAACTCAAAGCCATTATCCGTTAGAGCTAGCAACAGGACA 374
                                                                                  

consensus_4049#0      GTATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAGTAATTCAGGAATCG 598
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      GTATGGTAATAGTGCATCACGTCTTAAAACAGACGATCTTAAGTAGTAATTCAGGAATCG 434
                                                                                  

consensus_4049#0      GCCTGCCACCGGGCAGCGTTCAACAAATCAA-CCACTGCCATTT-TCAAACCTCTCGATA 656
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      GCCTGCCACCGGGCAGCGTTCAACAAATCAAGCCACTGCCATTTGTCAAACCTCTCGATA 494
                                                                                  

consensus_4049#0      GCTGGACGTA-GATATTTAGAACCTTGTATCGTGTATCGTGTTTAAAC---ATATTTCGA 712
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      GCTGGACGTACGATCTTTAGAACCTTGTATCGTGCATCGTGTTTAAACGAAATATTCCGA 554
                                                                                  

consensus_4049#0      ------------------------------------------------------------
consensus_4049#2      ------------------------------------------------------------
consensus_4049#1      GTNGATCATCTCAGAAACGAAAGTTAGGAACATCTGATCAAGACCATACAGGCGGACCGA 614
                                                                                  

consensus_4049#0      -----------------
consensus_4049#2      -----------------
consensus_4049#1      GCCGAGCGGAAGGGGTG 631