These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [CCGAATGAATGTTCTTCTCCGATTGCAATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGGGAGAAAGCAAATAACGATGGCTGATGCTGAACTAAAATACTTACTGTAAATGTGGTTTAAACGATGTGGAAGTGTGTTCCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACTCGGGGAACATTCGAAGAGAAGGTGTGAATAAAAGTTGCCCTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAGAGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCATTCGAAAGTTGCTAAACTCTACCAAAGCTGTCGCTGTAGAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCAAAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGGTGGTATTGTAGGGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCTTTATTATGTACATATGCAACAGCATATGAGAGATGTAACACGAACCGCA] [+] EMBL BM630803 [CCGAATGAATGTTCTTCTCCGATTGCAATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGGGAGAAAGCAAATAACGATGGCTGATGCTGAACTAAAATACTTACTGTAAATGTGGTTTAAACGATGTGGAAGTGTGTTCCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACTCGGGGAACATTCGAAGAGAAGGTGTGAATAAAAGTTGCCCTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAGAGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCATTCGAAAGTTGCTAAACTCTACCAAAGCTGTCGCTGTAGAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCAAAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGGTGGTATTGTAGGGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCTTTATTATGT ] [+] EMBL BM604130 [ ccgAAACGATCGTTCAACGTGGCGAACAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCTGTCGAAAGCTGCTAAACTCTACCATAGCTGTCGCTGTAGAGGACAGTTTTCGTTTAATATTTTCCTACGAGCGTACCAAAGCTCAGACAAAAAAAGCGTAGAAAGACGAGCAAAAGTAACA GT GTATTGTACG GAGAGAGAGAGAGAACGACACTACAAAACCCGCTACCGAGCATACAAAACGAAATGGTCTTCAAGCAGCTGCTACAAACGATGCAACACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCTTTATTATGTACATATGCAACAGCATATGAGAGATGTAACACGAACCGCA] consensusID : consensus_4052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACTTTCACATCGTTTAAACCACATTTACAGTAAGTGAAAGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACAGGGGAACATTCGAAGAGAAGGTGTGAAGAAAAGCTGTTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCACGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCGTTCGAAAGTTGGTAAACTCTACCAAAGCTAAAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCATAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGTGTATTGTAGGGAGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCCTTTATTATGTACATATGCAACAGTAGAAGA] [+] EMBL BM575390 [CCGGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACTTTCACATCGTTTAAACCACATTTACAGTAAGTGAAAGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAATGTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACAGGGGAACATTCGAAGAGAAGGTGTGAAGAAAAGCTGTTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCACGAGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTATGATTTTATTTCGTTCGAAAGTTGGTAAACTCTACCAAAGCTAAAGTAGAGTTTTCGTTTAATATTTTCCTACGAGCGTAGCATAGCTCAGACAAAAAAAGCGTAGAAAGACAAGCAAAAGTAACAGTGTATTGTAGGGAGAGAGAGAGAGAGAGAACGACACTACAAAACCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAACCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCCATATATATTTGCAAAACCCCTTTATTATGTACATATGCAACAGTAGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4052#0 CCGAATGAATGTTCTTCTCCGATTGCAATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGA 60 consensus_4052#1 --------------------------------------------------------CCGG 4 * * consensus_4052#0 GAGGGAGAAAGCAAATAACGATGGCTGATGCTGAACTAAAATACTTACTGTAAATGTGGT 120 consensus_4052#1 TGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACTTT--CACATCGTTTAAACCACAT 62 * * * * ** * * ** *** ** * * **** * consensus_4052#0 TTAAACGATGTGGAAGTGTGTTCCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAAT 180 consensus_4052#1 TTACAGTAAGTGAAAGTGTGTTGCCACGATGCAAAGCAGCTGAATCTCACACGCGCAAAT 122 *** * * *** ********* ************************************* consensus_4052#0 GTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACTCGGGGAACATTCGAAGAGAAGGTG 240 consensus_4052#1 GTGTTTTACGAAAGCAGCTGCTTGGATACGGAGACA-GGGGAACATTCGAAGAGAAGGTG 181 *********************************** *********************** consensus_4052#0 TGAATAAAAGTTGCCCTCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAGAG 300 consensus_4052#1 TGAAGAAAAGCTGT--TCCCCATTTTACAACAGGTAACATTACAGTACAACTATCCAC-G 238 **** ***** ** ***************************************** * consensus_4052#0 AGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTA 360 consensus_4052#1 AGCAAACGATCGTTCAACGTGGCGAAGAGGCGGCAAAGGGGAAGAACAATCAGATCAGTA 298 ************************************************************ consensus_4052#0 TGATTTTATTTCATTCGAAAGTTGCTAAACTCTACCAAAGCTGTCGCTGTAGAGTAGAGT 420 consensus_4052#1 TGATTTTATTTCGTTCGAAAGTTGGTAAACTCTACCAAAGCT--------AAAGTAGAGT 350 ************ *********** ***************** * ******** consensus_4052#0 TTTCGTTTAATATTTTCCTACGAGCGTAGCAAAGCTCAGACAAAAAAAGCGTAGAAAGAC 480 consensus_4052#1 TTTCGTTTAATATTTTCCTACGAGCGTAGCATAGCTCAGACAAAAAAAGCGTAGAAAGAC 410 ******************************* **************************** consensus_4052#0 AAGCAAAAGTAACAGGTGGTATTGTAGGGAGAGAGAGAGAGAGA--ACGACACTACAAAA 538 consensus_4052#1 AAGCAAAAGTAACAGT--GTATTGTAGGGAGAGAGAGAGAGAGAGAACGACACTACAAAA 468 *************** ************************** ************** consensus_4052#0 CCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAA 598 consensus_4052#1 CCAGCAACCGAGCATACAAAACGAAATGGTCTTCAAGCAACTGCAACAAACGATACAAAA 528 ************************************************************ consensus_4052#0 CCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCC 658 consensus_4052#1 CCATAGAGAAGAATGGAAACAAACTTTTAGCCGAGTGTAAAGCCGCTTAGAAACAGTTCC 588 ************************************************************ consensus_4052#0 ATATATATTTGCAAAACCC-TTTATTATGTACATATGCAACAGCATATGAGAGATGTAAC 717 consensus_4052#1 ATATATATTTGCAAAACCCCTTTATTATGTACATATGCAACAGTAGAAGA---------- 638 ******************* *********************** * * ** consensus_4052#0 ACGAACCGCA 727 consensus_4052#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||