These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 855 fasta sequence [TCTTTCTCCCTCTCCCTATCTCACTTGAAGAGTCTTTTCTTTCTGTTCCTCAAAGCAGATGAGGTACTTGCAGGTGCGTAACACGCAAAGCCTCTACGCGCAGTTCCCTGTAAGATCATATGTTCCATATTTTACATGCCATCACTCCCTTTCCCGCATTTCAGTTTTCGGGAGCGGCATTCCGACCAGGTGACCAGGAACGGCATACATGCGTATACTTCTTTAGCGAAACAATACAAGCAAAACTAGAAAGGCAAATCCACCCCAGAACACTACTGTGCAATGTGATATTATATTTTTCGCGCTTTAAAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAAATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCATGCGCTTTCGACACGCAGGGTACGCAAAAGCATCGCGTAGAGTTTGAAGGCATCAGCAAAGCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCAAAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAACTGAGCTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTCCGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGGTTCCGTTGTGAGTTCACCTTCGCCAGACGAGCGGTCCTACAGACGCTTTCCGTTAGGGTGATGTTGGGGATACTGGCTCGCCCATGCACTGCGTAATCTGTAGTAGTTGCAGTTTATCACGATCTAACGTACTGT] [+] EMBL BX614655 [TCTTTCTCCCTCTCCCTATCTCACTTGAAGAGTCTTTTCTTTCTGTTCCTCAAAGCAGATGAGGTACTTGCAGGTGCGTAACACGCAAAGCCTCTACGCGCAGTTCCCTGTAAGATCATATGTTCCATATTTTACATGCCATCACTCCCTTTCCCGCATTTCAGTTTTCGGGAGCGGCATTCCGACCAGGTGACCAGGAACGGCATACATGCGTATACTTCTTTAGCGAAACAATACAAGCAAAACTAGAAAGGCAAATCCACCCCAGAACACTACTGTGCAATGTGATATTATATTTTTCGCGCTTTAAAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAAATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCATGCGCTTTCGACACGCAGGGTACGCAAAAGCATCGCGTAGAGTTTGAAGGCATCAGCAAAGCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCAAAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAACTGAGCTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTCCGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGGTTC ] [+] EMBL BX611670 [ AAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAAATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCATGCGCTTTCGACACGCAGTGTACGCAAAAGCATCGCGTATAGTTTGAAGGCATCAGCAAAGCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCAAAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAACTGAACTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTCCGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGGTTCCGTTGTGAGTTCACCTTCGCCAGACGAGCGGTCCTACAGACGCTTTCCGTTAGGGTGATGTTGGGGATACTGGCTCGCCCATGCACTGCGTAATCTGTAGTAGTTGCAGTTTATCACGATCTAACGTACTGT] consensusID : consensus_4053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 130 fasta sequence [ACAGGCCATCACTCCCTGCCCCGCATACCAGTTTTCGGGAGCGGCATCCCGACCAGGGGACCAGGAACGGCATACATGCGTACACTGCTGGAGCGAAACAATACAAGCAAAACTAGAAAGGCAAACCCAC] [+] EMBL BX613704 [ACAGGCCATCACTCCCTGCCCCGCATACCAGTTTTCGGGAGCGGCATCCCGACCAGGGGACCAGGAACGGCATACATGCGTACACTGCTGGAGCGAAACAATACAAGCAAAACTAGAAAGGCAAACCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4053#0 TCTTTCTCCCTCTCCCTATCTCACTTGAAGAGTCTTTTCTTTCTGTTCCTCAAAGCAGAT 60 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 GAGGTACTTGCAGGTGCGTAACACGCAAAGCCTCTACGCGCAGTTCCCTGTAAGATCATA 120 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 TGTTCCATATTTTACATGCCATCACTCCCTTTCCCGCATTTCAGTTTTCGGGAGCGGCAT 180 consensus_4053#1 -------------ACAGGCCATCACTCCCTGCCCCGCATACCAGTTTTCGGGAGCGGCAT 47 *** ************* ******* ******************* consensus_4053#0 TCCGACCAGGTGACCAGGAACGGCATACATGCGTATACTTCTTTAGCGAAACAATACAAG 240 consensus_4053#1 CCCGACCAGGGGACCAGGAACGGCATACATGCGTACACTGCTGGAGCGAAACAATACAAG 107 ********* ************************ *** ** **************** consensus_4053#0 CAAAACTAGAAAGGCAAATCCACCCCAGAACACTACTGTGCAATGTGATATTATATTTTT 300 consensus_4053#1 CAAAACTAGAAAGGCAAACCCAC------------------------------------- 130 ****************** **** consensus_4053#0 CGCGCTTTAAAGTGTTTGATAGGTTTTTCTCTCTCTGGGCAGAATAAGCGGAAGAAATAA 360 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 ATGGGAAGGAATACAATTTGCGAAACCAATGTCGCAACAATGTGTGCTGCGATGCTTGCA 420 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 TGCGCTTTCGACACGCAGGGTACGCAAAAGCATCGCGTAGAGTTTGAAGGCATCAGCAAA 480 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 GCTGTGGGCAATAAGGCGTGTTGCGTGAGCACCACCTTATTTCCGAAACTGCGCGTTGCA 540 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 AAACGGTAACCTACTAGAAGAAACATACAAAACAAACAAAAAATCAATTAAGCTGTATAA 600 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 CTGAGCTTTCGGCGGACCAGGATCCGCATCCCGTCTATCGTAGATAATTTTCCAAAATTC 660 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 CGAAAGGCGAAAGGCATCGCTGCCGGGCGTCACCGCGTGGCGTGTGAAGTAGCTTAACGG 720 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 TTCCGTTGTGAGTTCACCTTCGCCAGACGAGCGGTCCTACAGACGCTTTCCGTTAGGGTG 780 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 ATGTTGGGGATACTGGCTCGCCCATGCACTGCGTAATCTGTAGTAGTTGCAGTTTATCAC 840 consensus_4053#1 ------------------------------------------------------------ consensus_4053#0 GATCTAACGTACTGT 855 consensus_4053#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||