cluster # 4055

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Anopheles gambiae
cluster # 4055 cluster # 4055 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4055#0 length = 725 sequences # 1

consensus_4055#1 length = 654 sequences # 2

consensusID : consensus_4055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence

                              [CAAAACAACCTTCCAACTAGCGCAATACCATGCAAGCGTGCTAGCGTATAGACACAGCAGAAGTAGAAGGAACAGCATAGGAAAACCGTTGCACCGATCACCGATTAACACATCGTATACACACACACACACACACTCACACACACAAGCTTACTTTCCGCTCATCTTCCAACGCTCTTTTACACGCTCACTGCAACAGAGAGAAACACTTACACACGTATATTCATGGGAAAGAAAAGTACTACACCAATACAATACAATATATAATCTCTTTAACCTCTAGTAGCAATGGAAACGTTTGGGAAAATGGTGTATACAATTCAGACCAGAAATGTTCAACGAATGTGAGGCAACATACATGATTTTCATACAACACCACGCAGAAAGATCAAAATAGGAAGGAAGAAATAGATAAATTAAAAGAAAGTAAGAGATAAAGAGAGTAAATGATACAAGACATTAACACGAACCACAAAACAAAAGAACAGTGAAAAACTCAATAGCAAACCTTACACACCAATCTTAGGACGAAACTCCAACCAGCAAGTTGGGGTTATGTTTTGTTTTTGATGTACGAAAAAGACCAACCGCAAACTTTACAACATGAGCAGAACTATATTAGTGAACGAATTAACAAAAGAAAGCTATTTATCTAGTCGTAAGTACCTGTTAGGTCCGTTTTGACAGGTTGCAATAGTGTATAGTGATATGTAGAATGAGAATGT]

[+] EMBL BX615181             [CAAAACAACCTTCCAACTAGCGCAATACCATGCAAGCGTGCTAGCGTATAGACACAGCAGAAGTAGAAGGAACAGCATAGGAAAACCGTTGCACCGATCACCGATTAACACATCGTATACACACACACACACACACTCACACACACAAGCTTACTTTCCGCTCATCTTCCAACGCTCTTTTACACGCTCACTGCAACAGAGAGAAACACTTACACACGTATATTCATGGGAAAGAAAAGTACTACACCAATACAATACAATATATAATCTCTTTAACCTCTAGTAGCAATGGAAACGTTTGGGAAAATGGTGTATACAATTCAGACCAGAAATGTTCAACGAATGTGAGGCAACATACATGATTTTCATACAACACCACGCAGAAAGATCAAAATAGGAAGGAAGAAATAGATAAATTAAAAGAAAGTAAGAGATAAAGAGAGTAAATGATACAAGACATTAACACGAACCACAAAACAAAAGAACAGTGAAAAACTCAATAGCAAACCTTACACACCAATCTTAGGACGAAACTCCAACCAGCAAGTTGGGGTTATGTTTTGTTTTTGATGTACGAAAAAGACCAACCGCAAACTTTACAACATGAGCAGAACTATATTAGTGAACGAATTAACAAAAGAAAGCTATTTATCTAGTCGTAAGTACCTGTTAGGTCCGTTTTGACAGGTTGCAATAGTGTATAGTGATATGTAGAATGAGAATGT]




>consensus_4055#0
CAAAACAACCTTCCAACTAGCGCAATACCATGCAAGCGTGCTAGCGTATAGACACAGCAG
AAGTAGAAGGAACAGCATAGGAAAACCGTTGCACCGATCACCGATTAACACATCGTATAC
ACACACACACACACACTCACACACACAAGCTTACTTTCCGCTCATCTTCCAACGCTCTTT
TACACGCTCACTGCAACAGAGAGAAACACTTACACACGTATATTCATGGGAAAGAAAAGT
ACTACACCAATACAATACAATATATAATCTCTTTAACCTCTAGTAGCAATGGAAACGTTT
GGGAAAATGGTGTATACAATTCAGACCAGAAATGTTCAACGAATGTGAGGCAACATACAT
GATTTTCATACAACACCACGCAGAAAGATCAAAATAGGAAGGAAGAAATAGATAAATTAA
AAGAAAGTAAGAGATAAAGAGAGTAAATGATACAAGACATTAACACGAACCACAAAACAA
AAGAACAGTGAAAAACTCAATAGCAAACCTTACACACCAATCTTAGGACGAAACTCCAAC
CAGCAAGTTGGGGTTATGTTTTGTTTTTGATGTACGAAAAAGACCAACCGCAAACTTTAC
AACATGAGCAGAACTATATTAGTGAACGAATTAACAAAAGAAAGCTATTTATCTAGTCGT
AAGTACCTGTTAGGTCCGTTTTGACAGGTTGCAATAGTGTATAGTGATATGTAGAATGAG
AATGT

consensusID : consensus_4055#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 654
fasta sequence

                              [TCATCATCACCTTCCGCCTGCCCACCGACGGAAACCTGCACCAGCTGCACGGAGTTGAAGAGGAGTGAGAAAAGGAAGGAAAAACAGGTCAGCCATCCGTCCACCGCCTGACCTTGCCATCCGTGCGCCGTCAGCACAGTCGTCACCGCAAAAGTTATGATGCGCATCGCCGCATCGGCCGCACCTAAAATCGAAGGTCACACATGTTTCGGTCAGGCCTGGGGAGGGTAGGAGTCAAGGAGCCCGGAGGTTCCGTATCCGGAAAACGTTCCGGCTGTTTTGATTTTGCACTGTTTGCCTATTTGCCAAACATACTTTTTGCTACATACGCGTGACGCACATGAATGCCTCGGAAGCAAAAACAAAAAGCTTTCGACTTCGACGCGATAGAGGTAGATTTCTAACGTTGCTTAGGCAGACGGGTGGGCCCAGGGACAGGGCCAGACAGCGCAGGCAGCTCAACTAGGCTGTCAAGCAATTAGCGAAAACGCCAAATTAGAAAACTCACTAGATGCAGGTACGACGGGTAACAGTATCCTAGGTCAAGCCTTACGGCTATATAGCGAAACTCCAACCAGCAAGTTGGGGTTATGTTTTGTTTTTGATGTACGAAAAAGACCAACCGCAAACTTTACAACATGAGCAGAACTATAT]

[+] EMBL BX609366             [TCATCATCACCTTCCGCCTGCCCACCGACGGAAACCTGCACCAGCTGCACGGAGTTGAAGAGGAGTGAGAAAAGGAAGGAAAAACAGGTCAGCCATCCGTCCACCGCCTGACCTTGCCATCCGTGCGCCGTCAGCACAGTCGTCACCGCAAAAGTTATGATGCGCATCGCCGCATCGGCCGCACCTAAAATCGAAGGTCACACATGTTTCGGTCAGGCCTGGGGAGGGTAGGAGTCAAGGAGCCCGGAGGTTCCGTATCCGGAAAACGTTCCGGCTGTTTTGATTTTGCACTGTTTGCCTATTTGCCAAACATACTTTTTGCTACATACGCGTGACGCACATGAATGCCTCGGAAGCAAAAACAAAAAGCTTTCGACTTCGACGCGATAGAGGTAGATTTCTAACGTTGCTTAGGCAGACGGGTGGGCCCAGGGACAGGGCCAGACAGCGCAGGCAGCTCAACTAGGCTGTCAAGCAATTAGCGAAAACGCCAAATTAGAAAACTCACTAGATGCAGGTACGACGGGTAACAGTATCCTAGGTCAAGCCTTACGGCTATATAGCGAAACT                                                                                    ]
[+] EMBL BX610393             [     ATCACCTTCCGCCTGCCCACCGACGGAAACCTGCACCAGCTGCACGGAGTTGAAGAGGAGTGAGAAAAGGAAGGAAAAACAGGTCAGCCATCCGTCCACCGCCTGACCTTGCCATCCGTGCGCCGTCAGCACAGTCGTCACCGCAAAAGTTATGATGCGCATCGCCGCATCGGCCGCACCTAAAATCGAAGGTCACACATGTTTCGGTCAGGCCTGGGGAGGGTAGGAGTCAAGGAGCCCGGAGGTTCCGTATCCGGAAAACGTTCCGGCTGTTTTGATTTTGCACTGTTTGCCTATTTGCCAAACATACTTTTTGCTACATACGCGTGACGCACATGAATGCCTCGGAAGCAAAAACAAAAAGCTTTCGACTTCGACGCGATAGAGGTAGATTTCTAACGTTGCTTAGGCAGACGGGTGGGCCCAGGGACAGGGCCAGACAGCGCAGGCAGCTCAACTAGGCTGTCAAGCAATTAGCGAAAACGCCAAATTAGAAAACTCACTAGATGCAGGTACGACGGGTAACAGTATCCTAGGTCAAGCCTTACGGCTATATAGCGAAACTCCAACCAGCAAGTTGGGGTTATGTTTTGTTTTTGATGTACGAAAAAGACCAACCGCAAACTTTACAACATGAGCAGAACTATAT]




>consensus_4055#1
TCATCATCACCTTCCGCCTGCCCACCGACGGAAACCTGCACCAGCTGCACGGAGTTGAAG
AGGAGTGAGAAAAGGAAGGAAAAACAGGTCAGCCATCCGTCCACCGCCTGACCTTGCCAT
CCGTGCGCCGTCAGCACAGTCGTCACCGCAAAAGTTATGATGCGCATCGCCGCATCGGCC
GCACCTAAAATCGAAGGTCACACATGTTTCGGTCAGGCCTGGGGAGGGTAGGAGTCAAGG
AGCCCGGAGGTTCCGTATCCGGAAAACGTTCCGGCTGTTTTGATTTTGCACTGTTTGCCT
ATTTGCCAAACATACTTTTTGCTACATACGCGTGACGCACATGAATGCCTCGGAAGCAAA
AACAAAAAGCTTTCGACTTCGACGCGATAGAGGTAGATTTCTAACGTTGCTTAGGCAGAC
GGGTGGGCCCAGGGACAGGGCCAGACAGCGCAGGCAGCTCAACTAGGCTGTCAAGCAATT
AGCGAAAACGCCAAATTAGAAAACTCACTAGATGCAGGTACGACGGGTAACAGTATCCTA
GGTCAAGCCTTACGGCTATATAGCGAAACTCCAACCAGCAAGTTGGGGTTATGTTTTGTT
TTTGATGTACGAAAAAGACCAACCGCAAACTTTACAACATGAGCAGAACTATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4055#0      -CAAAACAACCTTCCA-------ACTAGCGCAATACCATGCAAGC-GTGCTAGCGTATAG 51
consensus_4055#1      TCATCATCACCTTCCGCCTGCCCACCGACGGAAACCTGCACCAGCTGCACGGAGTTGAAG 60
                       **  *  *******        **   ** **  *    * *** *  *     *  **

consensus_4055#0      ACACAGCAGAAGTAGAAGGAACAGCA--TAGGAAAACCGTTG--CACCGATCACCG--AT 105
consensus_4055#1      AGGAGTGAGAAAAGGAAGGAAAAACAGGTCAGCCATCCGTCCACCGCCTGACCTTGCCAT 120
                      *      ****   ******* * **  *  *  * ****    * **   *   *  **

consensus_4055#0      TAACACATCGTATACACACACA----CACACACACTCACACACACAAGCTTACTTTCCGC 161
consensus_4055#1      CCGTGCGCCGTCAGCACAGTCGTCACCGCAAAAGTTATGATGCGCATCGCCGCATCGGCC 180
                           *  ***   ****  *     * ** *   *   *  * **      * *    *

consensus_4055#0      TCATCTT---CCAACGCTCTTTTACA---CGCTCACTGCAACAGAGAGAAACACTTACAC 215
consensus_4055#1      GCACCTAAAATCGAAGGTCACACATGTTTCGGTCAGGCCTGGGGAGGGTAGGAGTCAAGG 240
                       ** **     * * * **    *     ** ***   *    *** * *  * * *   

consensus_4055#0      A---CGTATATTC-ATGGGAAAGAAAAGT----ACTACACCAATACAATACAATATATA- 266
consensus_4055#1      AGCCCGGAGGTTCCGTATCCGGAAAACGTTCCGGCTGTTTTGATTTTGCACTGTTTGCCT 300
                      *   ** *  ***  *       *** **     **      **     **  * *    

consensus_4055#0      ATCTCTTTAACCT-CTAGTAGCAATGGAAACGTTTGGGAAAATGGTGTATACAATTCAGA 325
consensus_4055#1      ATTTGCCAAACATACTTTTTGCTACATACGCGTGACGCACATGAATGCCTCGGAAGCAAA 360
                      ** *    *** * **  * ** *   *  ***   * * *    **  *   *  ** *

consensus_4055#0      CCAGAAATGTTCAACGAATGTGAGGCAACATACATGATTTTCATACAACACC-ACGCAGA 384
consensus_4055#1      AACAAAAAGCTTT-CGACTTCGACGCGATAGAGGTAGATTTCTAACGTTGCTTAGGCAGA 419
                          *** * *   *** *  ** ** * * *  *   ****  **    *  * *****

consensus_4055#0      AAGATCAAAATAGGAAGGAAGAAATAGATAAATTAAAAGA---AAGTAAGAGATAAAGAG 441
consensus_4055#1      CGGGTGGGCCCAGGGAC--AGGGCCAGACAGCGCAGGCAGCTCAACTAGGCTGTCAAGCA 477
                        * *      *** *   **    *** *    *        ** ** *   * ***  

consensus_4055#0      AGTAAATGATACAAGACATTAACACGAACCACAAAACAAAAGAACAGTGAAAAACTCAAT 501
consensus_4055#1      ATTAGCGAAAACGCCAAATTAGAA-AACTCACTAGATGCAGGTACGACGGGTAACAGTAT 536
                      * **    * **   * ****  *  *  *** * *   * * **   *   ***   **

consensus_4055#0      AGCAAACCTTACACACCAATCTTAGGACGAAACTCCAACCAGCAAGTTGGGGTTATGTTT 561
consensus_4055#1      CCTAGGTCAAGCCTTACGGCTATATAGCGAAACTCCAACCAGCAAGTTGGGGTTATGTTT 596
                         *   *   *    *     **   *********************************

consensus_4055#0      TGTTTTTGATGTACGAAAAAGACCAACCGCAAACTTTACAACATGAGCAGAACTATATTA 621
consensus_4055#1      TGTTTTTGATGTACGAAAAAGACCAACCGCAAACTTTACAACATGAGCAGAACTATAT-- 654
                      **********************************************************  

consensus_4055#0      GTGAACGAATTAACAAAAGAAAGCTATTTATCTAGTCGTAAGTACCTGTTAGGTCCGTTT 681
consensus_4055#1      ------------------------------------------------------------
                                                                                  

consensus_4055#0      TGACAGGTTGCAATAGTGTATAGTGATATGTAGAATGAGAATGT 725
consensus_4055#1      --------------------------------------------