These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 777 fasta sequence [GAGGCAGAATCCGCACGAGGCGACAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCT-CAGTC-GGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAACGGCTC-GATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTC-GGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACA-GGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGCGAAAATTT-CGTGCCCATACGCGATTGTCA-CATCGACATGGGTCAGAG-ACAAACCTATCGCNTCGTGCG-TTGCCTG-TCCGGGAATGTACAGNGCTCGGTGG-TCGGTTTACAATCAGGAGTTGCGT-GCACGANACGGG--CGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGCGCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACCAG] [+] EMBL BX467797 [GAGGCAGAATCCGCACGAGGCGACAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCT CAGTC GGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAACGGCTC GATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTC GGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACA GGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGCGAAAATTT CGTGCCCATACGCGATTGTCA CATCGACATGGGTCAGAG ACAAACCTATCGCNTCGTGCG TTGCCTG TCCGGGAATGTACAGNGCTCGGTGG TCGGTTTACAATCAGGAGTTGCGT GCACGANACGGG CGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGCGCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACCAG] [+] EMBL BX467579 [ GGCAGAATCGGCACGAGGCGACAGACGCTCCAGC AAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTA AAGATCTAGCTCCAGTCGGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGC TTCCCGCCTTTCCGTACACTCGACCGCCTCGGATGCTGCGAATTCGGCTGGAACGACTCCA GCTAGAGTCTCGGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGC AAAATTTACGGTCCCAT CGCGATTGTCACCATCAAC TGGGTCAGAGAACAAACCTATCGC TCGTGCGTTTGCCTGTTCCCGGAATGTACA AGCTCGGTGGTTCGGTTTACCATCAGGAGTTGCTTGGCAGGAAAAGGGGCCGAACCGCTAGTTGGG AG CGGAAGGGACca ] consensusID : consensus_4061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAGAGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAACCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCTTCCCGCCTTTCCGTACACTCGACCGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGCTAGAGTCTCGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGGCACCCAACGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCGCTAGTTTGCAAAATTTCGTCCCATCGCGATTG] [+] EMBL AL931484 [CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAGAGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAACCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCTTCCCGCCTTTCCGTACACTCGACCGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGCTAGAGTCTCGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGGCACCCAACGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCGCTAGTTTGCAAAATTTCGTCCCATCGCGATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4061#0 ------------------------------------------------------------ consensus_4061#1 CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAG 60 consensus_4061#0 ------------------------------------------------------------ consensus_4061#1 AGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAA 120 consensus_4061#0 GAGGCAGAATCCGCACGAGGC--GACA-GACGCTCCAGCAAAGCAGTGAAGATATTTTGC 57 consensus_4061#1 CCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGC 180 * ** **** * * **** ******************************** consensus_4061#0 AGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAG 117 consensus_4061#1 AGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAG 240 ************************************************************ consensus_4061#0 ACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAA 177 consensus_4061#1 ACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAA 300 ************************************************************ consensus_4061#0 CAAT-GTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGAT 236 consensus_4061#1 CAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGAT 360 **** ******************************************************* consensus_4061#0 GAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAA 296 consensus_4061#1 GAAAGCTCCACGATGCTAACTGATCCGTGCGCCGC-TTCCCGCCTTTCCGTACACTCGAC 419 *********************************** *********************** consensus_4061#0 CGGCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTCGGCTTAACAAAC 356 consensus_4061#1 CGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAG-CTAGAGTCTCGGCTTAACAAAC 478 ** ********************************** ********************** consensus_4061#0 GAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTA 416 consensus_4061#1 GAATGTTTTTGGTGTCGCAAAATCCG-GCACCCAAC-GTGGCATGTGCTACCGGATATTA 536 ************************** ********* *********************** consensus_4061#0 CTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACG 476 consensus_4061#1 CTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACG 596 ************************************************************ consensus_4061#0 CACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTA-GAGAAGAATTTGTTGCGTGCG 535 consensus_4061#1 CACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCG 656 ************************************** ********************* consensus_4061#0 CTAGTTTGCGAAAATTTCGTGCCCATACGCGATTGTCACATCGACATGGGTCAGAGACAA 595 consensus_4061#1 CTAGTTTGC-AAAATTTCGT-CCCAT-CGCGATTG------------------------- 688 ********* ********** ***** ******** consensus_4061#0 ACCTATCGCNTCGTGCGTTGCCTGTCCGGGAATGTACAGNGCTCGGTGGTCGGTTTACAA 655 consensus_4061#1 ------------------------------------------------------------ consensus_4061#0 TCAGGAGTTGCGTGCACGANACGGGCGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGC 715 consensus_4061#1 ------------------------------------------------------------ consensus_4061#0 GCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACC 775 consensus_4061#1 ------------------------------------------------------------ consensus_4061#0 AG 777 consensus_4061#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||