These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAATATGTTTATATCGGACGAATTATGCTATCGAAGCCAGCAGATTCGGGCAAACAACGCACTGCTTTTGGCTCTGTATGAAGCAATACATTTAAATCGAAATTTCATAACCACATTAGCGCATACACAAGCAGATTCTACTCCGCCTTCACCGTGCAATACGTTGAATATAAATGATGGATCGCCTGACTTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTATTTCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATTTGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAGATCAATATGCGAACTCAATGATGCATGACACCAACCTTACGTTCAAAGTTTCATTGCATCGAGCTCATATGAGACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCACAACCGCTGGCAAACACATTATTAGATCTTTTAGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTACGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGTTTATTAAAATTTCTCATCTACCAAGAACAAAATCTCATGAAGAGATGTAATATATTTGATTTAGCATTACAGGTTATTAATATTTTCAATCTTTTTATAACTTATGGGGACACGTTTCTTGCAACAACCAACAGCTATGATGAGCTTTATTACGAATTAAACCGCGAAGAAAAAGTGNTCTGTGAATTACATGCCATGGNTCTACGATATGCTTCNATGCAAGA] [+] EMBL BM584577 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAATATGTTTATATCGGACGAATTATGCTATCGAAGCCAGCAGATTCGGGCAAACAACGCACTGCTTTTGGCTCTGTATGAAGCAATACATTTAAATCGAAATTTCATAACCACATTAGCGCATACACAAGCAGATTCTACTCCGCCTTCACCGTGCAATACGTTGAATATAAATGATGGATCGCCTGACTTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTATTTCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATTTGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAGATCAATATGCGAACTCAATGATGCATGACACCAACCTTACGTTCAAAGTTTCATTGCATCGAGCTCATATGAGACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCACAACCGCTGGCAAACACATTATTAGATCTTTTAGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTACGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGT ] [+] EMBL BX623683 [ GATCGCCTGACTTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTATTTCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATTTGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAGATCAATATGCGAACTCAATGATGCATGACACCAACCTTACGTTCAAAGTTTCATTGCATCGAGCTCATATGAGACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCACAACCGCTGGCAAACACATTATTAGATCTTTTAGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTACGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGTTTATTAAAATTTCTCATCTACCAAGAACAAAATCTCATGAAGAGATGTAATATATTTGATTTAGCATTACAGGTTATTAATATTTTCAATCTTTTTATAACTTATGGGGACACGTTTCTTGCAACAACCAACAGCTATGATGAGCTTTATTACGAATTAAACCGCGAAGAAAAAGTGNTCTGTGAATTACATGCCATGGNTCTACGATATGCTTCNATGCAAGA] consensusID : consensus_4065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGTGAAAATTTTCAGGAGGTTTCTTCAGATATTATCGTATATTTTTGCATAAAATTAACTTAGCTCAAAATTTTTCATGTGTTTATAAAGCTGACTAAATATCCTTTATAAAATGTCTAAACTTATCAAAATCGGTTCATATTTGAAAAAGTTACAAAGGTTCAAAGTTTTCCAAAAAAAATTCTGCGTTTTTTTAACAAATCTCGACTTTGAGAGGTGTTTTCTAAAGAACCAGAACAGATACCGAGCTCATATTTGGTATTTTTCTTAGTTTAACCCTTAGTATTAAAACCTATTATTTGGAATTGCGCTATTACAAAGTTGATTTTTTGAATTTCATCCCGGCAAATGCATTGGCTGCTTTTCCCCTGATACCATGTTGACTGTTGAACTATCAGATTATATGCTGATGCTTTGGAGTCACGTTGGTCAACATGGGACCAGAATTTCCAATGCAGTTCAGCGTGTGCAACATTTTTGTAACATAACTATGTACTATTTTAAAGTAATTAAAAAAATGCTTTTGTATTTGCAGATCTTTTTAGCGGAGCTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGATGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCG] [+] EMBL BM640879 [CCGTGAAAATTTTCAGGAGGTTTCTTCAGATATTATCGTATATTTTTGCATAAAATTAACTTAGCTCAAAATTTTTCATGTGTTTATAAAGCTGACTAAATATCCTTTATAAAATGTCTAAACTTATCAAAATCGGTTCATATTTGAAAAAGTTACAAAGGTTCAAAGTTTTCCAAAAAAAATTCTGCGTTTTTTTAACAAATCTCGACTTTGAGAGGTGTTTTCTAAAGAACCAGAACAGATACCGAGCTCATATTTGGTATTTTTCTTAGTTTAACCCTTAGTATTAAAACCTATTATTTGGAATTGCGCTATTACAAAGTTGATTTTTTGAATTTCATCCCGGCAAATGCATTGGCTGCTTTTCCCCTGATACCATGTTGACTGTTGAACTATCAGATTATATGCTGATGCTTTGGAGTCACGTTGGTCAACATGGGACCAGAATTTCCAATGCAGTTCAGCGTGTGCAACATTTTTGTAACATAACTATGTACTATTTTAAAGTAATTAAAAAAATGCTTTTGTATTTGCAGATCTTTTTAGCGGAGCTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGATGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4065#0 ---------CCGCCCACGCGTCCGCCCACGCGTCCGGAAATATGTTTATATCGGACGAAT 51 consensus_4065#1 CCGTGAAAATTTTCAGGAGGTTTCTTCAGATATTATCGTATATTTTTGCATAAAATTAAC 60 * ** ** * **** *** ** * ** consensus_4065#0 TATGCTATCGAAGCCAGCAGATTCGGGCAAA--CAACGCACTGCTTTTGGCTC--TGTAT 107 consensus_4065#1 TTAGCT-CAAAATTTTTCATGTGTTTATAAAGCTGACTAAATATCCTTTATAAAATGTCT 119 * *** ** ** * *** ** * * ** *** * consensus_4065#0 GAAGCAATACATTTAAATCGAAATTTCATAA--CCACA-----TTAGCGCATACACAAGC 160 consensus_4065#1 AAACTTATCAAAATCGGTTCATATTTGAAAAAGTTACAAAGGTTCAAAGTTTTCCAAAAA 179 ** ** * * * * **** * ** *** * * * * * ** consensus_4065#0 AGATTCTACTCCGCCTTCACCGTGCAATACGTTGA-ATATAAATGATGGATCGCCTGA-C 218 consensus_4065#1 AAATTCTGCGTTTTTTTAACAAATCTCGACTTTGAGAGGTGTTTTCTAAAGAACCAGAAC 239 * ***** * ** ** * ** **** * * * * * ** ** * consensus_4065#0 TTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTA 278 consensus_4065#1 AGATACCGAGCTCATATTTGGTATTTTTC---TTAGTTTAACCCTTAGTATTAAAACCTA 296 ** * *** *** ** ** *** * ** ** ** * **** consensus_4065#0 TT--TCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATT 336 consensus_4065#1 TTATTTGGAATTGCGCTATTACAAAGTTGATTTTTTGAATTTCATCCCGGCAAATGCATT 356 ** * * *** * ** * * * * ** * ** * ** *** consensus_4065#0 TGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAG-ATCA----ATATGCGAACTC 391 consensus_4065#1 GGCTGCTTT-TCCCCTGATACC-ATGTTGACTGTTGAACTATCAGATTATATGCTGATGC 414 * **** * **** * * * ** **** **** ****** * * consensus_4065#0 AATGATG-CATGACACCAACCTTACGTTCAAAGTTTC-ATTGCA-TCGAGCTCATATGAG 448 consensus_4065#1 TTTGGAGTCACGTTGGTCAACATGGGACCAGAATTTCCAATGCAGTTCAGCGTGTGCAAC 474 ** * ** * * * * * ** * **** * **** * *** * * consensus_4065#0 ACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCAC-AACCGCTGGCAAACACATTAT 507 consensus_4065#1 ATTTTTGTAACATA-ACTATGTACTATTTTAAAGTAATTAAAAAAATGCTTTTGTATTTG 533 * * * ** * * * * *** ** * ** ** *** consensus_4065#0 TAGATCTTTT-AGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTT 566 consensus_4065#1 CAGATCTTTTTAGCGGAGCTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTT 593 ********* ** **** ***************************************** consensus_4065#0 TATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTA 626 consensus_4065#1 TATCTTTTATGCGATGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCG-- 651 ************* ******************************************** consensus_4065#0 CGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGTTTATTAAAATTTCTC 686 consensus_4065#1 ------------------------------------------------------------ consensus_4065#0 ATCTACCAAGAACAAAATCTCATGAAGAGATGTAATATATTTGATTTAGCATTACAGGTT 746 consensus_4065#1 ------------------------------------------------------------ consensus_4065#0 ATTAATATTTTCAATCTTTTTATAACTTATGGGGACACGTTTCTTGCAACAACCAACAGC 806 consensus_4065#1 ------------------------------------------------------------ consensus_4065#0 TATGATGAGCTTTATTACGAATTAAACCGCGAAGAAAAAGTGNTCTGTGAATTACATGCC 866 consensus_4065#1 ------------------------------------------------------------ consensus_4065#0 ATGGNTCTACGATATGCTTCNATGCAAGA 895 consensus_4065#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||