These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 891 fasta sequence [AGAAATTCGTTTCCATCTCCACACACACGAGGAAGACAAAGTAGGAAATTTCAAAAGAAGTTCACACACCTTTCGCCAGTTTATGCAAACCCATCTCAGTGCTAGGTTCAAATGATTTGTTCTCTTCTCGCAATGTTTTAGAGTTTATAGGGTAAAAGTATGTAAAATGCAAAGTCATTCGTCCGGCGTCTCGGTGTACACCGTTGAGTGTTCGCTTAGTTAACTAAGATACGTCTTCTTATTGTTTTATCCTTCTTTTATTCTACCGTTTTAGGAATGGTTTAGTTTTAGCTTTAGGTTTACTAATACGACACGAAACTCAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTACCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCAAATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTCTAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACGCAACGCTGCCATTACGGTTTGCGACAGCCTGGGTTTGTTCCTTTTTCCCGCATCACGT] [+] EMBL BX613516 [AGAAATTCGTTTCCATCTCCACACACACGAGGAAGACAAAGTAGGAAATTTCAAAAGAAGTTCACACACCTTTCGCCAGTTTATGCAAACCCATCTCAGTGCTAGGTTCAAATGATTTGTTCTCTTCTCGCAATGTTTTAGAGTTTATAGGGTAAAAGTATGTAAAATGCAAAGTCATTCGTCCGGCGTCTCGGTGTACACCGTTGAGTGTTCGCTTAGTTAACTAAGATACGTCTTCTTATTGTTTTATCCTTCTTTTATTCTACCGTTTTAGGAATGGTTTAGTTTTAGCTTTAGGTTTACTAATACGACACGAAACTCAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTACCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCAAATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTCTAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACG ] [+] EMBL BX616691 [ TACGACACGAAACTCAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTACCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCAAATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTCTAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACGCAACGCTGCCATTACGGTTTGCGACAGCCTGGGTTTGTTCCTTTTTCCCGCATCACGT] consensusID : consensus_4074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [CAGAATCCCCACGAGNNCATACTCAAACACACAAACAAACACATTAAAATGCACCTTTCATTAATTTGATTTTCCATTTTCTCATTTTATATACCATTTTATATACCTTCATCATCATCAAAAAGTCCATTTCGCGTGCCTCTCAAATAGCTTCACAATCGATCAGATCCAACACGATTAATGGTATAGAAGGAAAAAGCAACTCTAAAAAGCTAAAAGCCGCACACATAAATCGAAATAATCGCTAACGATGCAAACAATGGAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGGTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACATGCCTTACACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTGACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCANAAGCGAACGCAACGCTGGNCGTTTACGGTTTGCGCCAGCCTGGGTTTGGTGTCCTTTGNTCCCGCATCACGTGATGCTATAAGTAACGGGTACGGTTAGCGTTTGACACCCGAAGTTTACTGTGTACGGTTTAAAAGGGTAACGAAGCNAGCGAAAAACAGGAAAGTACNATGAGT] [+] EMBL BX468262 [CAGAATCCCCACGAGNNCATACTCAAACACACAAACAAACACATTAAAATGCACCTTTCATTAATTTGATTTTCCATTTTCTCATTTTATATACCATTTTATATACCTTCATCATCATCAAAAAGTCCATTTCGCGTGCCTCTCAAATAGCTTCACAATCGATCAGATCCAACACGATTAATGGTATAGAAGGAAAAAGCAACTCTAAAAAGCTAAAAGCCGCACACATAAATCGAAATAATCGCTAACGATGCAAACAATGGAAAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGGTGATACAAGAACAAGGTACAATCACTATATACGCTATTTACTATTTACATGCCTTACACACACACACACAAACTCTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTAAATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTGACGCGCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCANAAGCGAACGCAACGCTGGNCGTTTACGGTTTGCGCCAGCCTGGGTTTGGTGTCCTTTGNTCCCGCATCACGTGATGCTATAAGTAACGGGTACGGTTAGCGTTTGACACCCGAAGTTTACTGTGTACGGTTTAAAAGGGTAACGAAGCNAGCGAAAAACAGGAAAGTACNATGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4074#0 AGAAATTCGTTTCCATCTCCACACACACGAGGAAGACAAAGTAGGAAATTTCAAAAGAAG 60 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 TTCACACACCTTTCGCCAGTTTATGCAAACCCATCTCAGTGCTAGGTTCAAATGATTTGT 120 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 TCTCTTCTCGCAATGTTTTAGAGTTTATAGGGTAAAAGTATGTAAAATGCAAAGTCATTC 180 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 GTCCGGCGTCTCGGTGTACACCGTTGAGTGTTCGCTTAGTTAACTAAGATACGTCTTCTT 240 consensus_4074#1 ------------------------------------------------------------ consensus_4074#0 ATTGTTTTATCCTTCTTTTATTCTACCGTTTTAGGAATGGTTTAGTTTTAGCTTTAGGTT 300 consensus_4074#1 -------------------------------CAGAATCCCCACGAGNNCATACTCAAACA 29 ** * * * * consensus_4074#0 TACTAATACG-ACACGAAACT-CAGTTTTAGATAATCAAACCTTTCATTAATTTGATTTA 358 consensus_4074#1 CACAAACAAACACATTAAAATGCACCTTTCATTAATTTGATTTTCCATTTTCTCATTTTA 89 ** ** * *** *** * ** *** **** * ** **** * **** consensus_4074#0 CCATTTTCTCATTTTATATACCTTCATCGTCGTCAAAAAGTCCATTTCGCGTACCTCTCA 418 consensus_4074#1 ----TATACCATTTTATATACCTTCATCATCATCAAAAAGTCCATTTCGCGTGCCTCTCA 145 * * ******************* ** ******************** ******* consensus_4074#0 AATAGCTTAACAATCGATCAGACCCAACACGATTAATGGTATAGAAGGACAAAGCAACTC 478 consensus_4074#1 AATAGCTTCACAATCGATCAGATCCAACACGATTAATGGTATAGAAGGAAAAAGCAACTC 205 ******** ************* ************************** ********** consensus_4074#0 TAAAACGCTAAAAGTCGCACACATAAATCGAAACAATCGCTAACGATGCAAACAATGGAA 538 consensus_4074#1 TAAAAAGCTAAAAGCCGCACACATAAATCGAAATAATCGCTAACGATGCAAACAATGGAA 265 ***** ******** ****************** ************************** consensus_4074#0 AAACGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGTTGATACAAGAACAA 598 consensus_4074#1 AA-CGACGACTCTGGGAGAGATTCCTCCCCTCGATAATCCGAATGGTGATACAAGAACAA 324 ** ****************************************** ************** consensus_4074#0 GGTACAATCACTATATACGCTATTTACTATTTACACGCCTTACACACACACACA--AACT 656 consensus_4074#1 GGTACAATCACTATATACGCTATTTACTATTTACATGCCTTACACACACACACACAAACT 384 *********************************** ****************** **** consensus_4074#0 CTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTA 716 consensus_4074#1 CTCTACTAGAGCGCTCTACAGCAGCAACAAACAACCGAATGATGATAATTGTACGCCTTA 444 ************************************************************ consensus_4074#0 AATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATT-ACGC 775 consensus_4074#1 AATGTTATGAAAGTCATTTAACAAAAATATTCCCCCGGCTCACTATCGTGAAATTGACGC 504 ******************************************************* **** consensus_4074#0 GCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCAAAAGCGAACGCA 835 consensus_4074#1 GCAGAACGTGGGACAGGCTTCCTAAAGTGGAGTTTAAAGATCGCTTCANAAGCGAACGCA 564 ************************************************ *********** consensus_4074#0 ACGCTGCCA--TTACGGTTTGCGACAGCCTGGGTTTG---TTCCTTTTTCCCGCATCACG 890 consensus_4074#1 ACGCTGGNCGTTTACGGTTTGCGCCAGCCTGGGTTTGGTGTCCTTTGNTCCCGCATCACG 624 ****** ************ ************* * * ** ************ consensus_4074#0 T----------------------------------------------------------- 891 consensus_4074#1 TGATGCTATAAGTAACGGGTACGGTTAGCGTTTGACACCCGAAGTTTACTGTGTACGGTT 684 * consensus_4074#0 --------------------------------------------- consensus_4074#1 TAAAAGGGTAACGAAGCNAGCGAAAAACAGGAAAGTACNATGAGT 729 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||