These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 714 fasta sequence [ACATTGCGGGAATTGCGGCGAAACGGGTANGATCGGGTAAGATCTNGTTACATCGTCGGGCTCG-ATCCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATTAAGCAACTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCNAAACCNGGCANGCGTGTATTACATCTCGACCGCCCCCGANCGAGCCATTCCCTTNCCAGCGGAACGGTAGAATTGCGACNAAGCGCCTNCCTGGATCCCTTCTGCTGCTTTCACTCGCCNTCNACGTACATACGGATCGCTAAATCGAAGCTAAAATACAAAATATACCAAAAAAACACGACACATAACCCATCTGAGGTGATGTACGGTCGGAATGCTTTTCCAAATTCCGGTTGGCCCCCCGGAAAGCAAAGCTTCCAAATTAATTTGGAACGCCCGAAAAAAANGGGTTTGGGGGCACAAGAGAGNGAGAGAGACNC] [+] EMBL BX619632 [ACATTGCGGGAATTGCGGCGAAACGGGTANGATCGGGTAAGATCTNGTTACATCGTCGGGCTCG ATCCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATTAAGCAACTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCNAAACCNGGCANGCGTGTATTACATCTCGACCGCCCCCGANCGAGCCATTCCCTTNCCAGCGGAACGGTAGAATTGCGACNAAGCGCCTNCCTGGATCCCTTCTGCTGCTTTCACTCGCCNTCNACGTACATACGGATCGCTAAATCGAAG ] [+] EMBL BX468290 [ agcagaatcGGCACGTAGGCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGA TAAGCAACTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACC GGCAGGCGTGTATTACATCTCGACCG CCCGAACGAGCCATT CCTTCGCAGCGGAACGGTAGAATTGCGACGAAGCGCCT CCTGGAT CCTTCTGCTGCTTTCACTCGCC TCGACGTACATACGGATCGCTTAATCGAAGCTAAAATACAAAATATACCAAAAAAACACGACACATAACCCATCTGAGGTGATGTACGGTCGGAATGCTTTTCCAAATTCCGGTTGGCCCCCCGGAAAGCAAAGCTTCCAAATTAATTTGGAACGCCCGAAAAAAANGGGTTTGGGGGCACAAGAGAGNGAGAGAGACNC] consensusID : consensus_4084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGCGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATAAGCAACTATTACGCCCGGCGGTGCGATGGCATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACCGGCAGGCGTGTATTACATCTCGACCGCCCCGAACGAGCCATTCCTTCGCAGCGGAACGGTAGAATTGCGACGAAGCGCCTCCTGGATCCTTCTGCTGCTTTCACTCGCCTCGACGTACATACGGATCGCTTAATCGAAGCTAAAATACAACATATATCAAAAAAACACACACATAACCCATCTGAGTGATGTACGTCGAATGCTTTTCAATCGTGCCCGACACTCATATGACCAAAGTGGAAATACCAACAAACGGAGAAGATTACGCCGA] [+] EMBL BX622874 [TTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGCGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATAAGCAACTATTACGCCCGGCGGTGCGATGGCATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACCGGCAGGCGTGTATTACATCTCGACCGCCCCGAACGAGCCATTCCTTCGCAGCGGAACGGTAGAATTGCGACGAAGCGCCTCCTGGATCCTTCTGCTGCTTTCACTCGCCTCGACGTACATACGGATCGCTTAATCGAAGCTAAAATACAACATATATCAAAAAAACACACACATAACCCATCTGAGTGATGTACGTCGAATGCTTTTCAATCGTGCCCGACACTCATATGACCAAAGTGGAAATACCAACAAACGGAGAAGATTACGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4084#0 ACATTGCGGGAATTGCGGCGAAACGGGTANGATCGGGTAAGATCTNGTTACATCGTCGGG 60 consensus_4084#1 ------------------------------------------------------------ consensus_4084#0 CTCGATCCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGAC 120 consensus_4084#1 ---------------------TTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGAC 39 *************************************** consensus_4084#0 GATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAAC 180 consensus_4084#1 GATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAAC 99 ************************************************************ consensus_4084#0 ATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGC 240 consensus_4084#1 ATTGGCCAGGCCGACTACTATCCTAACGGCGGCGTTCGACAGCCGGGCTGCGGATTCAGC 159 ******************************** *************************** consensus_4084#0 CTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATTAAGCAA 300 consensus_4084#1 CTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGAT-AAGCAA 218 ***************************************************** ****** consensus_4084#0 CTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCG 360 consensus_4084#1 CTATTACGCCCGGCGGTGCGATGGCATCGCGAACCTTGGGCCGACCTGTTCCACCGATCG 278 ************************ *********************************** consensus_4084#0 GACGGTGCTGGGCGGAATGATCTGGAAGTCGTCNAAACCNGGCANGCGTGTATTACATCT 420 consensus_4084#1 GACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACCGG-CAGGCGTGTATTACATCT 337 ********************************* ***** * ** *************** consensus_4084#0 CGACCGCCCCCGANCGAGCCATTCCCTTNCCAGCGGAACGGTAGAATTGCGACNAAGCGC 480 consensus_4084#1 CGACCGCCCC-GAACGAGCCATTCC-TTCGCAGCGGAACGGTAGAATTGCGACGAAGCGC 395 ********** ** *********** ** *********************** ****** consensus_4084#0 CTNCCTGGATCCCTTCTGCTGCTTTCACTCGCCNTCNACGTACATACGGATCGCTAAATC 540 consensus_4084#1 CTCC-TGGATCC-TTCTGCTGCTTTCACTCGCCT-CGACGTACATACGGATCGCTTAATC 452 ** * ******* ******************** * ****************** **** consensus_4084#0 GAAGCTAAAATACAAAATATACCAAAAAAACACGACACATAACCCATCTGAGGTGATGTA 600 consensus_4084#1 GAAGCTAAAATACAACATATATCAAAAAAACAC-ACACATAACCCATCTGAG-TGATGTA 510 *************** ***** *********** ****************** ******* consensus_4084#0 CGGTCGGAATGCTTTTCCAAATTCCGGTTGGCCCCCCGGAAAGCAAAGCTTCCAAATTAA 660 consensus_4084#1 CGTC--GAATGCTTTTC--AATCGTGCCCGACACTCATATGACCAAAGTGGAAATACCAA 566 ** *********** *** * * * * * * ***** * * ** consensus_4084#0 TTTGGAACGCCCGAAAAAAANGGGTTTGGGGGCACAAGAGAGNGAGAGAGACNC 714 consensus_4084#1 C---AAACG---GAGAAGATTACGCCGA-------------------------- 588 **** ** ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||