These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 889 fasta sequence [GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGAGCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATGAAACGAAGCGTCTTGCTCCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACCAATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGCGAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCACACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTTTCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGTTTGCTGCCAGCCAGGCCATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTTCCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATACAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTTCGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGTTATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT] [+] EMBL BX613408 [GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGAGCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATGAAACGAAGCGTCTTGCTCCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACCAATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGCGAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCACACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTTTCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGTTTGCTGCCAGCCAGGCCATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTTCCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATACAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTTCGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGTTATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT] [+] EMBL BX618401 [ AACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACGGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCAAATCATAGAGCGTAATGGTGTACTTAGCGAAACTCTCAAATACGCACCTTTGTGga ] consensusID : consensus_4096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCCGAGGTTATATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACTGATATCCAACTCCATTATGGTCGTGGTTCCGGTTTATTGAAGCAAAACAACACATAATACAACACTTACAACGAGTAGTAAACTGTTTCTATTGGAGCGCAGTCGCATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCGAAAGATAGGAAGAGTGTCAGTATACATGTTTCAAATCCAATGTCAGCGATAGTTATCTGTTTGCGTTATGGTTAGTGCTGCCAGCCGTATTGAAGATACTGAAGAAGCACTGAGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAATTGGTGGTTGTAGTTTACCACCATGCTGCAACATGTGCAAGACATGCGTCTATCATTTTTCTAAACTACACACACACACACACACACACACTACGTACATGGGAAGCGAGTGATTACTAGTTCTGATTCACTATAACATGANATAATGTACTTGACGAACACGGAAAAAAAGTCGACGAAACACAGAAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCCCCACCAACCACACATGAACAATGATGCATCGACACCNATCACGATGATGATGAACAAGAAAAAAGCANAACA] [+] EMBL AL933545 [CCCGAGGTTATATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACTGATATCCAACTCCATTATGGTCGTGGTTCCGGTTTATTGAAGCAAAACAACACATAATACAACACTTACAACGAGTAGTAAACTGTTTCTATTGGAGCGCAGTCGCATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCGAAAGATAGGAAGAGTGTCAGTATACATGTTTCAAATCCAATGTCAGCGATAGTTATCTGTTTGCGTTATGGTTAGTGCTGCCAGCCGTATTGAAGATACTGAAGAAGCACTGAGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAATTGGTGGTTGTAGTTTACCACCATGCTGCAACATGTGCAAGACATGCGTCTATCATTTTTCTAAACTACACACACACACACACACACACACTACGTACATGGGAAGCGAGTGATTACTAGTTCTGATTCACTATAACATGANATAATGTACTTGACGAACACGGAAAAAAAGTCGACGAAACACAGAAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCCCCACCAACCACACATGAACAATGATGCATCGACACCNATCACGATGATGATGAACAAGAAAAAAGCANAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4096#0 GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGA 60 consensus_4096#1 -------------------------------------------------------CCCGA 5 * *** consensus_4096#0 GCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATG 120 consensus_4096#1 G-GTTA-TATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAAC 63 * *** *** *** * * ** * ** * ** * * * consensus_4096#0 AAACGAAGCGTCTTGCT-CCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACC 179 consensus_4096#1 AAACAAACTGATATCCAACTCCATTATGGTCGTGG---TTCCGGTTTATTGAAGCAAAAC 120 **** ** * * * * ** * ** * ** * * ** * *** * consensus_4096#0 AATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTT 239 consensus_4096#1 AACACATAATACAACACT-TACAACGAGTAGTAAACTGTTTCTATTGGA-GCGCAGTCGC 178 ** * * *** * * * ** * * ** ** * ** * * consensus_4096#0 ATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCC 299 consensus_4096#1 ATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCG 238 *** * * ** ** * *** ** * * * * ** consensus_4096#0 ACCGTTTCACGTAAT-CCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGC 358 consensus_4096#1 AAAGATAGGAAGAGTGTCAGTATACATGTTTCAA--ATCCAATGTCA-GCGATAGTTATC 295 * * * * * ** * * ** ** ** * ** * * ** *** * consensus_4096#0 GAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCA 418 consensus_4096#1 TG-TTTGCGTTATGGTTAGTGCTGCCA-GCCGTATTGAAG---ATACTGAAGAAGCACTG 350 * * ** * ** * ** * * ** * ** * * ** consensus_4096#0 CACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTT 478 consensus_4096#1 AGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAA-TTGGTGGT--TGTAGTTTA-- 405 * ** * * *** ** ** * * * ** ** * * ** ** consensus_4096#0 TCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGT 538 consensus_4096#1 ---CCACCATGCTGCAACATGT-GCAAGACATGCGTCTATCATTTTTC----TAAACTAC 457 *** ** *** *** ** ** * * * * * ** ** *** consensus_4096#0 TTGCTGCCAGCCAGGC-CATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTT 597 consensus_4096#1 ACACACACACACACACACACACTACGTACATGGGAAGCGA---GTG----ATTACTAGTT 510 * ** ** * ** * *** ** *** ** *** * * * *** consensus_4096#0 CCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATA 657 consensus_4096#1 CTGAT-TCACTATAACATG---ANATAATGTACTTGACGAACACGGAAAAA-AAGTCGAC 565 * ** ** ** **** * *** * ** * * ****** * *** consensus_4096#0 CAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTT 717 consensus_4096#1 GAAACACAG---------AAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCC 616 ***** * *** ** * * **** * * ** * * consensus_4096#0 CGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGT 777 consensus_4096#1 CCACCAACCACACATGAACAATGATGCATCG-ACACCNATCACGATGATGATGAACAAGA 675 * * ** * * * * ** *** ** ** ** * consensus_4096#0 TATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTA 837 consensus_4096#1 AAAAAGCANAACA----------------------------------------------- 688 * * consensus_4096#0 CCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT 889 consensus_4096#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||