Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4096 cluster # 4096       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4096#0 length = 889 sequences # 2  
consensus_4096#1 length = 688 sequences # 1  

consensusID : consensus_4096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 889
fasta sequence
                              [GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGAGCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATGAAACGAAGCGTCTTGCTCCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACCAATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGCGAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCACACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTTTCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGTTTGCTGCCAGCCAGGCCATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTTCCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATACAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTTCGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGTTATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT]

[+] EMBL BX613408             [GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGAGCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATGAAACGAAGCGTCTTGCTCCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACCAATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGCGAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCACACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTTTCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGTTTGCTGCCAGCCAGGCCATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTTCCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATACAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTTCGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGTTATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT]
[+] EMBL BX618401             [                                                                                                                                                                                                                 AACGACCGTCTTAATCGAATATATCAATTTATACTAGATACCTATACTACAACGGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCACCGTTTCACGTAATCCATTTCAGCAGTCCAAATCATAGAGCGTAATGGTGTACTTAGCGAAACTCTCAAATACGCACCTTTGTGga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_4096#0 GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGA GCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATG AAACGAAGCGTCTTGCTCCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACCA ATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTTA TACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCCA CCGTTTCACGTAATCCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGCGA ATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCACA CACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTTTC TCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGTTT GCTGCCAGCCAGGCCATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTTCCC ATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATACAA ACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTTCGG GCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGTTAT GGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTACCT GGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT



consensusID : consensus_4096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [CCCGAGGTTATATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACTGATATCCAACTCCATTATGGTCGTGGTTCCGGTTTATTGAAGCAAAACAACACATAATACAACACTTACAACGAGTAGTAAACTGTTTCTATTGGAGCGCAGTCGCATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCGAAAGATAGGAAGAGTGTCAGTATACATGTTTCAAATCCAATGTCAGCGATAGTTATCTGTTTGCGTTATGGTTAGTGCTGCCAGCCGTATTGAAGATACTGAAGAAGCACTGAGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAATTGGTGGTTGTAGTTTACCACCATGCTGCAACATGTGCAAGACATGCGTCTATCATTTTTCTAAACTACACACACACACACACACACACACTACGTACATGGGAAGCGAGTGATTACTAGTTCTGATTCACTATAACATGANATAATGTACTTGACGAACACGGAAAAAAAGTCGACGAAACACAGAAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCCCCACCAACCACACATGAACAATGATGCATCGACACCNATCACGATGATGATGAACAAGAAAAAAGCANAACA]

[+] EMBL AL933545             [CCCGAGGTTATATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAACAAACAAACTGATATCCAACTCCATTATGGTCGTGGTTCCGGTTTATTGAAGCAAAACAACACATAATACAACACTTACAACGAGTAGTAAACTGTTTCTATTGGAGCGCAGTCGCATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCGAAAGATAGGAAGAGTGTCAGTATACATGTTTCAAATCCAATGTCAGCGATAGTTATCTGTTTGCGTTATGGTTAGTGCTGCCAGCCGTATTGAAGATACTGAAGAAGCACTGAGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAATTGGTGGTTGTAGTTTACCACCATGCTGCAACATGTGCAAGACATGCGTCTATCATTTTTCTAAACTACACACACACACACACACACACACTACGTACATGGGAAGCGAGTGATTACTAGTTCTGATTCACTATAACATGANATAATGTACTTGACGAACACGGAAAAAAAGTCGACGAAACACAGAAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCCCCACCAACCACACATGAACAATGATGCATCGACACCNATCACGATGATGATGAACAAGAAAAAAGCANAACA]


>consensus_4096#1 CCCGAGGTTATATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAA AACAAACAAACTGATATCCAACTCCATTATGGTCGTGGTTCCGGTTTATTGAAGCAAAAC AACACATAATACAACACTTACAACGAGTAGTAAACTGTTTCTATTGGAGCGCAGTCGCAT AGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCGAA AGATAGGAAGAGTGTCAGTATACATGTTTCAAATCCAATGTCAGCGATAGTTATCTGTTT GCGTTATGGTTAGTGCTGCCAGCCGTATTGAAGATACTGAAGAAGCACTGAGAAAGGGCA GAAATGGACATTGCATAATATGGTGAAATTGGTGGTTGTAGTTTACCACCATGCTGCAAC ATGTGCAAGACATGCGTCTATCATTTTTCTAAACTACACACACACACACACACACACACT ACGTACATGGGAAGCGAGTGATTACTAGTTCTGATTCACTATAACATGANATAATGTACT TGACGAACACGGAAAAAAAGTCGACGAAACACAGAAGAGGACAACCCCCAATTTTCTAAT CCGCAAAACGCATTCCCCACCAACCACACATGAACAATGATGCATCGACACCNATCACGA TGATGATGAACAAGAAAAAAGCANAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4096#0      GGCAAAGTTTTCTTTTATTGGTGTGTTGCCACTGATAGTACAAACGATATTCTAACACGA 60
consensus_4096#1      -------------------------------------------------------CCCGA 5
                                                                             * ***

consensus_4096#0      GCGTTGGCGTTGGTGTAACAGTAGCAGACTTCCCCAATCATTGGAGTTGAGAAGAAGATG 120
consensus_4096#1      G-GTTA-TATTGTTGTGTTTTCTGGCAAGGCTACCTACCACCTTACCTGGCATAGAAAAC 63
                      * ***    *** ***       *   *     ** * **    *  **  *   * *  

consensus_4096#0      AAACGAAGCGTCTTGCT-CCCCGTGGAGGCGATAACACTTTGAGGTGTGCGAGGAAAACC 179
consensus_4096#1      AAACAAACTGATATCCAACTCCATTATGGTCGTGG---TTCCGGTTTATTGAAGCAAAAC 120
                      **** **  *   * *  * ** *   **   *     **   * *    ** * *** *

consensus_4096#0      AATTCTGCAATCAAGATTGTGAAAAAAACAAACGACCGTCTTAATCGAATATATCAATTT 239
consensus_4096#1      AACACATAATACAACACT-TACAACGAGTAGTAAACTGTTTCTATTGGA-GCGCAGTCGC 178
                      **  *   *  *** * * *  **  *  *    ** ** *  ** * *           

consensus_4096#0      ATACTAGATACCTATACTACAACTGGTCTCGGCACTGGAGAGGCTCAGTCAGCCAGCGCC 299
consensus_4096#1      ATAGAATGCGATTGTAGAACGATTGGCTGTTTCATGCAAATTTTGGTTTTAAAGGGTGCG 238
                      ***  *      * **  ** * ***      **    *         * *    * ** 

consensus_4096#0      ACCGTTTCACGTAAT-CCATTTCAGCAGTCCTAATCATAGAGCGTAATGTTGTACTTAGC 358
consensus_4096#1      AAAGATAGGAAGAGTGTCAGTATACATGTTTCAA--ATCCAATGTCA-GCGATAGTTATC 295
                      *  * *      * *  ** *  *   **   **  **  *  ** * *   ** *** *

consensus_4096#0      GAATCTCTCAAATACGCACCTTTGTGAAGCAAAACTAAAACTCACACCCACACACAACCA 418
consensus_4096#1      TG-TTTGCGTTATGGTTAGTGCTGCCA-GCCGTATTGAAG---ATACTGAAGAAGCACTG 350
                         * *     **    *    **  * **   * * **    * **  *   *  **  

consensus_4096#0      CACACACACACACACACACACACACAAACATATTCAGACTTTGTACTCCTATAACTTGTT 478
consensus_4096#1      AGAAAGGGCAGAAATGGACATTGCATAATATGGTGAAA-TTGGTGGT--TGTAGTTTA-- 405
                         *    ** * *   ***      ** **  * * * ** **  *  * **  **   

consensus_4096#0      TCTCCAGTTTGAACCAATTTGTAGCCGGATACCGTTACACCGTACTTTAGGATATACTGT 538
consensus_4096#1      ---CCACCATGCTGCAACATGT-GCAAGACATGCGTCTATCATTTTTC----TAAACTAC 457
                         ***   **   ***  *** **  ** *    *  * * *  **     ** ***  

consensus_4096#0      TTGCTGCCAGCCAGGC-CATGGTGCGTGTGTGACAAGTGAAACGTGTTGAACTGTTCGTT 597
consensus_4096#1      ACACACACACACACACACACACTACGTACATGGGAAGCGA---GTG----ATTACTAGTT 510
                         *   **  **  * **   * ***   **  *** **   ***    * *  * ***

consensus_4096#0      CCCATATCCCTTAAACACGTTCGAATAGGATGGTTTGAGTGTTCAGAAAAATAGGTCATA 657
consensus_4096#1      CTGAT-TCACTATAACATG---ANATAATGTACTTGACGAACACGGAAAAA-AAGTCGAC 565
                      *  ** ** **  **** *     ***   *  **   *    * ****** * ***   

consensus_4096#0      CAAACAAAATCGTTCTCCAAGCCATAAAAGACGACTTTTGTGTTGCGTGTTGCATAACTT 717
consensus_4096#1      GAAACACAG---------AAGAGGACAACCCCCAATTTTCTAATCCGCAAAACGCATTCC 616
                       ***** *          ***     **   * * **** *  * **     *  *    

consensus_4096#0      CGGGCGCTTTAGTGTGGTCGTTTCGGAGTTATGCAAATTGCACTATCGAAATCGTCAGGT 777
consensus_4096#1      CCACCAACCACACATGAACAATGATGCATCG-ACACCNATCACGATGATGATGAACAAGA 675
                      *   *         **  *  *   *  *    **     *** **    **   ** * 

consensus_4096#0      TATGGGGTTTGGGTTAACGATTTTTTTTGTGTTTTCTGGCAAAGGCTACCTACCACCTTA 837
consensus_4096#1      AAAAAGCANAACA----------------------------------------------- 688
                       *   *                                                      

consensus_4096#0      CCTGGCATAGAAAACAAACAAACAGATTTCCAACTCCATTATGGTCGTGGTT 889
consensus_4096#1      ----------------------------------------------------
                                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)