These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1054 fasta sequence [CCGCCCACGCGTCCGAATCTTCAGCTGGTCTGACAGATTAATGGAGCTGCGTGTGCGAAGCAGTGTGTGTGTCTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTTCGAATTGGTGATACGAAATGGGCTGGAGTGTGAAGTCGAGAATGAATTGTTAAAGCAGAGCATAAATTTCATACTTTACCGTGCGTAAAGGTGATTTGCTATAAAAAGTGTACTAAAAAGTGTGCTATAAAACTGTGCTACATCTTAGTGTACTGAAAATAATTAAAGAAAAGGTGTATTATACAAAACCTTGTGCAATAGTGATACGAGTGAAAGAAGCAACCATCCTGCTGCACATCTGATCTTGCCCCCTCAAGATCAGTATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTGTGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCGATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCGGCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTCCGCGACTCCAGCATGGTCGCGCTACCGTCCAGCCTGTACGGGGCCTTTCGCCAGCTGCAGGAGCTGCGCGTCTGGTGGATGCATCTGCACAGTATTCACATCGATCCGCGCCTGCTGTCGCTCGATGCGGAGAAGAATCGCATCAGCAGCATCACGACCGAGCCCGGCACGGTGCCGCTGCTCCGCAAGCTCGAGCTCAACCAGAACCGGCTGCGCAACATCGACAACATCTCGGTGTTTGAGAACCTGGAGGTGCTCGAGCTAGCGCACAACGATCTCCGCACGCTCGATCTTTGTGTGTTTCAGCGCATGCCCAAGCTGCGGCTGCTCGATCTTTCCAGCAACAATCTGGCGCTGGTGCGCAGCTCGATCGGTGCCGAGAAGCTTGCCTCACTGACAGTATTATATCTGAAC] [+] EMBL BM609024 [CCGCCCACGCGTCCGAATCTTCAGCTGGTCTGACAGATTAATGGAGCTGCGTGTGCGAAGCAGTGTGTGTGTCTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTTCGAATTGGTGATACGAAATGGGCTGGAGTGTGAAGTCGAGAATGAATTGTTAAAGCAGAGCATAAATTTCATACTTTACCGTGCGTAAAGGTGATTTGCTATAAAAAGTGTACTAAAAAGTGTGCTATAAAACTGTGCTACATCTTAGTGTACTGAAAATAATTAAAGAAAAGGTGTATTATACAAAACCTTGTGCAATAGTGATACGAGTGAAAGAAGCAACCATCCTGCTGCACATCTGATCTTGCCCCCTCAAGATCAGTATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTGTGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCGATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCGGCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTCCGCGACTCCAGCATGGTCGCGCTACCGTCCAGC ] [+] EMBL BM584595 [ ccgGATCAGTATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTGTGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCGATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCGGCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTCCGCGACTCCAGCATGGTCGCGCTACCGTCCAGCCTGTACGGGGCCTTTCGCCAGCTGCAGGAGCTGCGCGTCTGGTGGATGCATCTGCACAGTATTCACATCGATCCGCGCCTGCTGTCGCTCGATGCGGAGAAGAATCGCATCAGCAGCATCACGACCGAGCCCGGCACGGTGCCGCTGCTCCGCAAGCTCGAGCTCAACCAGAACCGGCTGCGCAACATCGACAACATCTCGGTGTTTGAGAACCTGGAGGTGCTCGAGCTAGCGCACAACGATCTCCGCACGCTCGATCTTTGTGTGTTTCAGCGCATGCCCAAGCTGCGGCTGCTCGATCTTTCCAGCAACAATCTGGCGCTGGTGCGCAGCTCGATCGGTGCCGAGAAGCTTGCCTCACTGACAGTATTATATCTGAAC] consensusID : consensus_4102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [ATGTCCAGGCCAGNACATCGCCACGAGGTNGTATTCAGCTGGTCTGACAGATTACCGGAGCTGCTGTGTGCGAAGCAGTGTGTGTGTTTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTCTCGAGACTTGGTGATACGAAACTGGGCTGGAGTGTGACAGTCAA] [+] EMBL BX466231 [ATGTCCAGGCCAGNACATCGCCACGAGGTNGTATTCAGCTGGTCTGACAGATTACCGGAGCTGCTGTGTGCGAAGCAGTGTGTGTGTTTGTGCAAATGTGTTTAATCAGCGCAGGAGCAGCTTGTAGTGGTGAATAATTTTACTGCACCGTCTCGAGACTTGGTGATACGAAACTGGGCTGGAGTGTGACAGTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4102#0 --------------CCGCCCACGCGTCCGAATCTTCAGCTGGTCTGACAGATTAATGGAG 46 consensus_4102#1 ATGTCCAGGCCAGNACATCGCCACGAGGTNGTATTCAGCTGGTCTGACAGATTACCGGAG 60 * * * ** * ********************* **** consensus_4102#0 CTGC-GTGTGCGAAGCAGTGTGTGTGTCTGTGCAAATGTGTTTAATCAGCGCAGGAGCAG 105 consensus_4102#1 CTGCTGTGTGCGAAGCAGTGTGTGTGTTTGTGCAAATGTGTTTAATCAGCGCAGGAGCAG 120 **** ********************** ******************************** consensus_4102#0 CTTGTAGTGGTGAATAATTTTACTGCACCGTTC---GAATTGGTGATACGAAA-TGGGCT 161 consensus_4102#1 CTTGTAGTGGTGAATAATTTTACTGCACCGTCTCGAGACTTGGTGATACGAAACTGGGCT 180 ******************************* ** ************** ****** consensus_4102#0 GGAGTGTGA-AGTCGAGAATGAATTGTTAAAGCAGAGCATAAATTTCATACTTTACCGTG 220 consensus_4102#1 GGAGTGTGACAGTCAA-------------------------------------------- 196 ********* **** * consensus_4102#0 CGTAAAGGTGATTTGCTATAAAAAGTGTACTAAAAAGTGTGCTATAAAACTGTGCTACAT 280 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 CTTAGTGTACTGAAAATAATTAAAGAAAAGGTGTATTATACAAAACCTTGTGCAATAGTG 340 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 ATACGAGTGAAAGAAGCAACCATCCTGCTGCACATCTGATCTTGCCCCCTCAAGATCAGT 400 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 ATCCGTCGGCCGCCGAGTTAGTTCACAAAAATGCACTTCGGAATAGCGGATGCATCTGTG 460 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 TGGCTAGTGTTGATCGCGGTGCGACTACAGCTCTGCACCTGCTCCAAGTACACCTGTGCG 520 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 ATCGGTTCGGACGGGTTCTGCATCTTCCAGGGCGTACACATCGAAAGCTCGGAGCAGGCG 580 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 GCAAACGTGCAGCTCGAACCACCGGCCGGCGCCGCCTCCGATGTGACGCGGGTCAAGTTC 640 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 CGCGACTCCAGCATGGTCGCGCTACCGTCCAGCCTGTACGGGGCCTTTCGCCAGCTGCAG 700 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 GAGCTGCGCGTCTGGTGGATGCATCTGCACAGTATTCACATCGATCCGCGCCTGCTGTCG 760 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 CTCGATGCGGAGAAGAATCGCATCAGCAGCATCACGACCGAGCCCGGCACGGTGCCGCTG 820 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 CTCCGCAAGCTCGAGCTCAACCAGAACCGGCTGCGCAACATCGACAACATCTCGGTGTTT 880 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 GAGAACCTGGAGGTGCTCGAGCTAGCGCACAACGATCTCCGCACGCTCGATCTTTGTGTG 940 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 TTTCAGCGCATGCCCAAGCTGCGGCTGCTCGATCTTTCCAGCAACAATCTGGCGCTGGTG 1000 consensus_4102#1 ------------------------------------------------------------ consensus_4102#0 CGCAGCTCGATCGGTGCCGAGAAGCTTGCCTCACTGACAGTATTATATCTGAAC 1054 consensus_4102#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||