These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence [AGGCAGAATCGGCACGTAGGGTTGTTACTATTTTCTAGAGATGATTTACGACTTTTAACACACAACAAACACGCGCACCGATACGCACTTTAAATGCCTCTCGAGAGTCTTGGGGGTGAGGTGAGGAAAATGGGAATCATGTTTTTTTTGTTTGTTTTATTATTATTATTACTGGAAGGATCGACTCCTACTTATCTTAATAGCAGAGTTTATTTATTATACATCGGAATAATTTGCTTTAGTAATACTGTAGCGACTATTTTTACTACAAGCTACTACTAGTACTATTACTACCACTACTACAGCTACTTTTACTACTAGGGGGAAGTTAGACGGTAATGGCAAATGTATACCGATATAGTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAGGGAGAGCGATTGAACTGTTTCAGAATTTAACGCGCAAAACGATAAAGCAATTCGAACCAATCCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCAC] [+] EMBL BX468354 [AGGCAGAATCGGCACGTAGGGTTGTTACTATTTTCTAGAGATGATTTACGACTTTTAACACACAACAAACACGCGCACCGATACGCACTTTAAATGCCTCTCGAGAGTCTTGGGGGTGAGGTGAGGAAAATGGGAATCATGTTTTTTTTGTTTGTTTTATTATTATTATTACTGGAAGGATCGACTCCTACTTATCTTAATAGCAGAGTTTATTTATTATACATCGGAATAATTTGCTTTAGTAATACTGTAGCGACTATTTTTACTACAAGCTACTACTAGTACTATTACTACCACTACTACAGCTACTTTTACTACTAGGGGGAAGTTAGACGGTAATGGCAAATGTATACCGATATAGTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAGGGAGAGCGATTG ] [+] EMBL BX609663 [ GAAGTTAGACGGTAATGGCAAATGTATACCGATATAGTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAGGGAGAGCGATTGAACTGTTTCAGAATTTAACGCGCAAAACGATAAAGCAATTCGAACCAATCCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCAC] consensusID : consensus_4110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGTGGAAACGGTAGCTATATGCGTAAAAAAGCCGTTGTTATAACGAAGCGAAAGGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCACAAGAAAGTACACATACACAGCAGCTACAGCAGCAAAACCACAATCAAATAAAATAACTACACT] [+] EMBL BX608840 [CCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACTGTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTGAATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGCACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGTGGAAACGGTAGCTATATGCGTAAAAAAGCCGTTGTTATAACGAAGCGAAAGGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCATGCGCGCAAAAAAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAGCAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGGGACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCCACAAGAAAGTACACATACACAGCAGCTACAGCAGCAAAACCACAATCAAATAAAATAACTACACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4110#0 AGGCAGAATCGGCACGTAGGGTTGTTACTATTTTCTAGAGATGATTTACGACTTTTAACA 60 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 CACAACAAACACGCGCACCGATACGCACTTTAAATGCCTCTCGAGAGTCTTGGGGGTGAG 120 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 GTGAGGAAAATGGGAATCATGTTTTTTTTGTTTGTTTTATTATTATTATTACTGGAAGGA 180 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 TCGACTCCTACTTATCTTAATAGCAGAGTTTATTTATTATACATCGGAATAATTTGCTTT 240 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 AGTAATACTGTAGCGACTATTTTTACTACAAGCTACTACTAGTACTATTACTACCACTAC 300 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 TACAGCTACTTTTACTACTAGGGGGAAGTTAGACGGTAATGGCAAATGTATACCGATATA 360 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 GTTAATAGTACGCGTTGTGCAAAAGAAATACGTGAGCAAGAGAGAAAGAGAGAGAGAGAG 420 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 GGAGAGCGATTGAACTGTTTCAGAATTTAACGCGCAAAACGATAAAGCAATTCGAACCAA 480 consensus_4110#1 ------------------------------------------------------------ consensus_4110#0 TCCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACT 540 consensus_4110#1 -CCAACCAATCCCAAGCAAAACGGATGTTTAGAAGCGATAGCCATTCATCCTTGATAACT 59 *********************************************************** consensus_4110#0 GTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTG 600 consensus_4110#1 GTATATGGATCCATGGTTTGCTGCAGTGCGCGGAAGATTAATTTATACAAGTGTCTGTTG 119 ************************************************************ consensus_4110#0 AATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGC 660 consensus_4110#1 AATTTTATTTTCTATTGCCTAAGTTATTATGTATTTTTTTATGAGCTATCGTTTAAGTGC 179 ************************************************************ consensus_4110#0 ACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAG-------------------- 700 consensus_4110#1 ACATTTTTATACTGTACGTGCATGGGGGGTAGAAAGAGAGTGGAAACGGTAGCTATATGC 239 **************************************** consensus_4110#0 ------------------------------------------------------AGAGAG 706 consensus_4110#1 GTAAAAAAGCCGTTGTTATAACGAAGCGAAAGGGAAAGAGAGAGAGAGAGAGAGAGAGAG 299 ****** consensus_4110#0 AGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCAT 766 consensus_4110#1 AGAGAGAGAGAGAGAGAGAGAGAAATCCAAATCCCGATGGGTAGTACTATTTTTATGCAT 359 ************************************************************ consensus_4110#0 GCGCGCAAAAAAAAAAAA-----CAAAAATACGCAATCTTACCTAATTATTGATTTGAAG 821 consensus_4110#1 GCGCGCAAAAAAAAAAAAAAAAACAAAAATACGCAATCTTACCTAATTATTGATTTGAAG 419 ****************** ************************************* consensus_4110#0 CAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGG 881 consensus_4110#1 CAGTGGCTGAAAATGGTACACCCGAGAACCCATGGTATGAGAGCAGGCTAGGAACAGTGG 479 ************************************************************ consensus_4110#0 GACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCC 941 consensus_4110#1 GACATACCTACAGTACTAATCGATCATCATTGTGAACGATGGATGTAGTACAGCACATCC 539 ************************************************************ consensus_4110#0 AC---------------------------------------------------------- 943 consensus_4110#1 ACAAGAAAGTACACATACACAGCAGCTACAGCAGCAAAACCACAATCAAATAAAATAACT 599 ** consensus_4110#0 ----- consensus_4110#1 ACACT 604 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||