These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1056 fasta sequence [AAAGCTTGATTCCTTGATTCCTGAGGCTCACCACCAAAACCGATTGTTGTTGTGCGGTATTGGTAGACCACAAACAAGTTCTCTAATTTTAATAGCTTCCCGATGATTGAGTGGTTAAGTTTTTTTCTTTTCAATACTCACACCAGCATCTTCGAAGCGCTCAATTTTGCTCCCTTTGACATCATTTTTGGCTCCCATCTTACACAGGCATGGCCAAATGTATGGCAAACATCTCTTCTCGCTCTTGACGCCAGTGTGTCAATCTTCTTGCACTGCAATATATAAACCAGAGTGTGTAGGGTTTTTTTGTTGTAAAATCAAAATAACTTACTGCGTTGGCTGTAAAAGCACAGCGTCGAAATTACGCTTTCATCTATATATAAATAATAACAATTTTAAGTACCGTTCACAATCGCAATCGCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTGAGTAGTGTGAAATAATCACAACCGGGGTGAGCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTGGTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGNTAAATGGATTCAAATGAGTTGTTGTTAGCAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGAAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAACAAGATATATATCTATTTAACACACGAAATCGATAACTGTACCTGATTAAAACAAAAGCAAACACAGAAACACACACCCACACACGCGGGGGTGCGGTTTTTTGGCGTTCATTTCTAC] [+] EMBL BX626684 [AAAGCTTGATTCCTTGATTCCTGAGGCTCACCACCAAAACCGATTGTTGTTGTGCGGTATTGGTAGACCACAAACAAGTTCTCTAATTTTAATAGCTTCCCGATGATTGAGTGGTTAAGTTTTTTTCTTTTCAATACTCACACCAGCATCTTCGAAGCGCTCAATTTTGCTCCCTTTGACATCATTTTTGGCTCCCATCTTACACAGGCATGGCCAAATGTATGGCAAACATCTCTTCTCGCTCTTGACGCCAGTGTGTCAATCTTCTTGCACTGCAATATATAAACCAGAGTGTGTAGGGTTTTTTTGTTGTAAAATCAAAATAACTTACTGCGTTGGCTGTAAAAGCACAGCGTCGAAATTACGCTTTCATCTATATATAAATAATAACAATTTTAAGTACCGTTCACAATCGCAATCGCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTGAGTAGTGTGAAATAATCACAACCGGGGTGAGCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTGGTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGNT ] [+] EMBL BX602986 [ TACCGTTCACAATCGCAATCGCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTAAGTAGTGTGAAATAATCACAACCGGGGT GCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTGGTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGT GCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAATGAGTTGTTGTTAGCAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGAAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAACAAGATATATATCTATTTAACACACGAAATCGATAACTGTACCTGATTAAAACAAAAGCAAACACAGAAACACACACCCACACACGCGGGGGTGCGGTTTTTTGGCGTTCATTTCTAC] consensusID : consensus_4116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [TCGCCCGAGGTTTCCGCAACATGCCTGTTTTGACGGAAGGTGTTGTTCAGTTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAAAGAGTTGTTGTTAGAAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGGAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAAAAAAAAAAAAANAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCATTGTTAGAGCCGAAAGCTTATCCCTTANATGAGAGGTTTAATTATAACGCTTGGAGAACTGGGCCGTCAGTTTAANAACGTCAGAGGACTGGAGNGAAAACCCTTGACGTAAACCCAACTNANATCGCGCCT] [+] EMBL AL930817 [TCGCCCGAGGTTTCCGCAACATGCCTGTTTTGACGGAAGGTGTTGTTCAGTTGAAACGATAGCAGAGTTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAATGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAAAGAGTTGTTGTTAGAAGAGAAGCTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGGAAACTAAGATCCCTCGTCCAGTACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTGTTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAATACAGAGTAACATTTACTACTATCCACAGCGCCACATAAAAAAAAAAAAAANAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCATTGTTAGAGCCGAAAGCTTATCCCTTANATGAGAGGTTTAATTATAACGCTTGGAGAACTGGGCCGTCAGTTTAANAACGTCAGAGGACTGGAGNGAAAACCCTTGACGTAAACCCAACTNANATCGCGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4116#0 AAAGCTTGATTCCTTGATTCCTGAGGCTCACCACCAAAACCGATTGTTGTTGTGCGGTAT 60 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 TGGTAGACCACAAACAAGTTCTCTAATTTTAATAGCTTCCCGATGATTGAGTGGTTAAGT 120 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 TTTTTTCTTTTCAATACTCACACCAGCATCTTCGAAGCGCTCAATTTTGCTCCCTTTGAC 180 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 ATCATTTTTGGCTCCCATCTTACACAGGCATGGCCAAATGTATGGCAAACATCTCTTCTC 240 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 GCTCTTGACGCCAGTGTGTCAATCTTCTTGCACTGCAATATATAAACCAGAGTGTGTAGG 300 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 GTTTTTTTGTTGTAAAATCAAAATAACTTACTGCGTTGGCTGTAAAAGCACAGCGTCGAA 360 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 ATTACGCTTTCATCTATATATAAATAATAACAATTTTAAGTACCGTTCACAATCGCAATC 420 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 GCCAGAGCAGGCGAAGCTTTTAATAAACATTCACTGTAAATAGCATTGAGTAGTGTGAAA 480 consensus_4116#1 ------------------------------------------------------------ consensus_4116#0 TAATCACAACCGGGGTGAGCATCTGTAGCGCAGGAATGAGTTTTCCTTTCATAAGATGTG 540 consensus_4116#1 ---------------------------------------------------TCGCCCGAG 9 * * * consensus_4116#0 GTTGTCTGACTGTGTGCGTGTTGTGACGGAAGGTGTTGTTCAGT-GAAACGATAGCAGAG 599 consensus_4116#1 GTTTCC--GCAACATGCCTGTTTTGACGGAAGGTGTTGTTCAGTTGAAACGATAGCAGAG 67 *** * * *** **** ********************* *************** consensus_4116#0 TTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAA 659 consensus_4116#1 TTAGAGATAAGGGCACCCATAATGGAAACTGTGCGAGCGTGTGAAGAGCAGAGATGAAAA 127 ************************************************************ consensus_4116#0 TGTCCCAGTAAATACGTAAACGGNTAAATGGATTCAAATGAGTTGTTGTTAGCAGAGAAG 719 consensus_4116#1 TGTCCCAGTAAATACGTAAACGGTTAAATGGATTCAAAAGAGTTGTTGTTAGAAGAGAAG 187 *********************** ************** ************* ******* consensus_4116#0 CTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGAAAACTAAGATCCCTCGTCCAGT 779 consensus_4116#1 CTGTAGCATTTAGTGTGGCAGAATCGTCGAGCAGAAGGAAACTAAGATCCCTCGTCCAGT 247 ************************************* ********************** consensus_4116#0 ACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTG 839 consensus_4116#1 ACGCGCGGTTTGTGTGTGGGTGACTCACAATGTGTATAGTAAAACCCCCTCGACCCTTTG 307 ************************************************************ consensus_4116#0 TTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAAT 899 consensus_4116#1 TTATCGCACACCGATTTGATGCATTTACGATGCATGCCGTTGTACATATACAATATAAAT 367 ************************************************************ consensus_4116#0 ACAGAGTAACATTTACTACTATCCACAGCGCCACATAAACAAGATATATATCTATTTAAC 959 consensus_4116#1 ACAGAGTAACATTTACTACTATCCACAGCGCCACATAAAAAAAAAAAAAANAAAAANAAA 427 *************************************** ** * * * * * ** consensus_4116#0 ACACGAAATCGATAACTGTACCTGATTAAAACAAAAGCAAACACAGAAACACACACCCAC 1019 consensus_4116#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCATTGTTAGAGCCGAAAGCTTATCCCTT 487 * * *** * ** * * * * * * * * **** *** consensus_4116#0 ACACGCGGGGGTGCGGTTTTTTGGCGTTCATTTCTAC----------------------- 1056 consensus_4116#1 ANATG-AGAGGTTTAATTATAACGCTTGGAGAACTGGGCCGTCAGTTTAANAACGTCAGA 546 * * * * *** ** * ** * * ** consensus_4116#0 ----------------------------------------------- consensus_4116#1 GGACTGGAGNGAAAACCCTTGACGTAAACCCAACTNANATCGCGCCT 593 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||