These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 955 fasta sequence [CCGCGGACGCGTGGGAAACATACCCCGGTCTGAACGTCTTCGGGAGACGCTCGTTGATACGCATCTGTTCCTGCAAGAATGCCAAAAGAAGCTCGGTCATAAACTGCCGTTGGCCGCTTATCTGCTAAAGCCGGTACAAAGAATTACAAAGTATCAACTTTTGCTTAAAGATTTGCTAAAGTTCAGCGATACTGGTACATGCTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGTTGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGACCTATCCCAGCAAGGCGAACTACTGATGCAAGATTCGTTCCAAGTTTGGACGGAAAGTAAAAAGGACTTGCGGCTACGGCTGAAAACACAAAATAGGCACATTTTCTTGTATCAAAAAGCAATGCTATTTTGTAAACAAGGGTCGAAAACGGGGCACAACAAGAGTACTTATCAATTTAAACACTGGCTACAGATGTCACAAATCGGTTTAACGGAATCCGTTCGCGGCGACTCTAGACGATTCGAGGTCTGGCTGCAAGGACGCCAAGAAGTGCATACTATACAAGCTACCACTATCGAAATAAAAAACAAATGGGTCGCTGAAATCAAGCGTGTTTTGCTGAACCAACTGGAAGAGCTAAAGGGTGAAAAAATCAAGCAATACGGCTTGAACCACAAACCTTTGCGGCACATGACTTCATGGGACGTTCCACAAGCTGTGCAAGGAACACCGAACCGAATATTAAGCAGCGACCAACAGCCGACGTTGCAGGCTAACGGTATAGGCATAGGTGGAATGGTCGGCCTGGCACAGGACGTGGTCACACGGATAGCTCATATGAACGATGATAGTCTTCTAAACGCTACCGGAAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTC] [+] EMBL BM617728 [CCGCGGACGCGTGGGAAACATACCCCGGTCTGAACGTCTTCGGGAGACGCTCGTTGATACGCATCTGTTCCTGCAAGAATGCCAAAAGAAGCTCGGTCATAAACTGCCGTTGGCCGCTTATCTGCTAAAGCCGGTACAAAGAATTACAAAGTATCAACTTTTGCTTAAAGATTTGCTAAAGTTCAGCGATACTGGTACATGCTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGTTGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGACCTATCCCAGCAAGGCGAACTACTGA ] [+] EMBL BX624139 [ CTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGTTGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGACCTATCCCAGCAAGGCGAACTACTGATGCAAGATTCGTTCCAAGTTTGGACGGAAAGTAAAAAGGACTTGCGGCTACGGCTGAAAACACAAAATAGGCACATTTTCTTGTATCAAAAAGCAATGCTATTTTGTAAACAAGGGTCGAAAACGGGGCACAACAAGAGTACTTATCAATTTAAACACTGGCTACAGATGTCACAAATCGGTTTAACGGAATCCGTTCGCGGCGACTCTAGACGATTCGAGGTCTGGCTGCAAGGACGCCAAGAAGTGCATACTATACAAGCTACCACTATCGAAATAAAAAACAAATGGGTCGCTGAAATCAAGCGTGTTTTGCTGAACCAACTGGAAGAGCTAAAGGGTGAAAAAATCAAGCAATACGGCTTGAACCACAAACCTTTGCGGCACATGACTTCATGGGACGTTCCACAAGCTGTGCAAGGAACACCGAACCGAATATTAAGCAGCGACCAACAGCCGACGTTGCAGGCTAACGGTATAGGCATAGGTGGAATGGTCGGCCTGGCACAGGACGTGGTCACACGGATAGCTCATATGAACGATGATAGTCTTCTAAACGCTACCGGAAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTC] consensusID : consensus_4119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [CCCCGAGGTTATGGCACAGGACGTGGTCACACGGATAGCTCATATGAATGATGATAGTCTTCTAAACGCTACCGGAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTCGAATAGCGAAGATGAGTTTACTACTGTAGAGGATAGTGTCGTGCCGGGGCACAAGTTTGTGTCATTGGCTGATTACTGTGCAATGGGAAATTCAGAAGTTTCTATGAAAGAGGCTGAAGTAGTGGAGCTGCTGAAAGTCGGCTGTGCAGGATGGTGGTTTGTGAAAGTGATCGCTACCGGCCTTGAAGGATGGGCTCCAGCAGCATACTTAGAGCCAGTGGCACGCAAAAATTCTCGCCTTAGAAGCGCGCGCAGCCAAGACCGACTGAACGACCACT] [+] EMBL AL933686 [CCCCGAGGTTATGGCACAGGACGTGGTCACACGGATAGCTCATATGAATGATGATAGTCTTCTAAACGCTACCGGAATCTCATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTCGAATAGCGAAGATGAGTTTACTACTGTAGAGGATAGTGTCGTGCCGGGGCACAAGTTTGTGTCATTGGCTGATTACTGTGCAATGGGAAATTCAGAAGTTTCTATGAAAGAGGCTGAAGTAGTGGAGCTGCTGAAAGTCGGCTGTGCAGGATGGTGGTTTGTGAAAGTGATCGCTACCGGCCTTGAAGGATGGGCTCCAGCAGCATACTTAGAGCCAGTGGCACGCAAAAATTCTCGCCTTAGAAGCGCGCGCAGCCAAGACCGACTGAACGACCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4119#0 CCGCGGACGCGTGGGAAACATACCCCGGTCTGAACGTCTTCGGGAGACGCTCGTTGATAC 60 consensus_4119#1 ------------------------------------------------------------ consensus_4119#0 GCATCTGTTCCTGCAAGAATGCCAAAAGAAGCTCGGTCATAAACTGCCGTTGGCCGCTTA 120 consensus_4119#1 ------------------------------------------------------------ consensus_4119#0 TCTGCTAAAGCCGGTACAAAGAATTACAAAGTATCAACTTTTGCTTAAAGATTTGCTAAA 180 consensus_4119#1 ------------------------------------------------------------ consensus_4119#0 GTTCAGCGATACTGGTACATGCTCGCGAGAGTTGCAGAAAGCATTGGATTGTATGTTGGT 240 consensus_4119#1 --------------------CCCCGAGGTTATGGCACAGGACGTGGTCACACGGATAGCT 40 * ** * * *** * * * * * * * consensus_4119#0 TGTATTAAAGTGTGTCAATGATTCAATGCACCAAATTGCAATAACGGGATTCCCGGCTGA 300 consensus_4119#1 CATATGAA----TGATGATAGTCTTCTAAACGCTACCGGAATCTCATGCTCCTCGTCCGA 96 *** ** ** ** * * ** * * *** * * * * ** * ** consensus_4119#0 CCTATCCCAGCAAGGCGAACTACTGATGCAAGATTCGTTCCAAGTTTGGACGGAAAGTAA 360 consensus_4119#1 AC-ACGATAACCAGGAAAGCAATGCATGGA------GCTCCGA--CTACTCGAATAGCGA 147 * * * * *** * * * *** * * *** * * ** * ** * consensus_4119#0 AAAGGA-CTTGCGGCTACGGCTGAAAACACAAAATAGGCACATTTTCTTGTATCAAAAAG 419 consensus_4119#1 AGATGAGTTTACTACTGTAGAGGATAGTGTCGTGCCGGGGCACAAGTTTGTGTCATTGGC 207 * * ** ** * ** * ** * ** ** **** *** consensus_4119#0 CAATGCTATTTTGTAAACAAGGGTCGAAAACGGGGCACAACAAGAGTACTTATCAATTTA 479 consensus_4119#1 TGAT--TACTGTGCAATGGGAAATTCAGAA---GTTTCTATGAAAGAG-------GCTGA 255 ** ** * ** ** * * ** * * * * ** * * consensus_4119#0 AACACTGGCTACAGATGTCACAAATCGGTTTAACGGAATCCGTTCGCGGCGACTCTAGAC 539 consensus_4119#1 AGTAGTGG----AGCTGCTGAAAGTCGGCTGTGCAGGATG-GTGGTTTGTGAAAGTGATC 310 * * *** ** ** ** **** * * * ** ** * ** * * consensus_4119#0 GATTCGAGGTCTGGCTGCAAGGACGCCAAGAAGTGCATACTATACAAGCTACCACTATCG 599 consensus_4119#1 GCTACC-GGCCTTGAAGGATGGGCTCCAGCA---GCATACT--------TAGAGCCAGTG 358 * * * ** ** * * * ** * *** * ******* ** * * * consensus_4119#0 AAATAAAAAACAAATGGGTCGCTGAAATCAAGCGTGTTTTGCTGA-ACCAACTGGAAGAG 658 consensus_4119#1 GCACGCAAA---AATTC-TCGCCTTAG--AAGCGCGCGCAGCCAAGACCGACTGAACGAC 412 * *** *** **** * ***** * ** * *** **** * ** consensus_4119#0 CTAAAGGGTGAAAAAATCAAGCAATACGGCTTGAACCACAAACCTTTGCGGCACATGACT 718 consensus_4119#1 CACT-------------------------------------------------------- 416 * consensus_4119#0 TCATGGGACGTTCCACAAGCTGTGCAAGGAACACCGAACCGAATATTAAGCAGCGACCAA 778 consensus_4119#1 ------------------------------------------------------------ consensus_4119#0 CAGCCGACGTTGCAGGCTAACGGTATAGGCATAGGTGGAATGGTCGGCCTGGCACAGGAC 838 consensus_4119#1 ------------------------------------------------------------ consensus_4119#0 GTGGTCACACGGATAGCTCATATGAACGATGATAGTCTTCTAAACGCTACCGGAAATCTC 898 consensus_4119#1 ------------------------------------------------------------ consensus_4119#0 ATGCTCCTCGTCCGAACACGATAACCAGGAAAGCAATGCATGGAGCTCCGACTACTC 955 consensus_4119#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||