These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence [CCGCCGATGCATGCCATCCATGCGTGCGGCGGCGGCCTGGACAGCAGTTCGGCCGGCTCCAGCTGCAACAGCTCGTCTCCCTCCAGCCCGGCGCTGCTTTCGTTGCCACCGCAAACACCCGCCACATCCAAGTACTCGCAGTTCAACTTCCCCGAGGTGTCGAACAGCATCGGCGGCGGCGGTGGAGGCGGCAATGGCGGTTCGCTGATGATGATGAACTACGCCAGCTCGATGGGCGGCGGTAGCAGCAGTGGCGGAATAACGATCGAAACGCACCCGATCGGGGGTGGGACGGGTGGTGCGGGCGGACTAGGCGGAAGCCTCGGCAGCAGCGGCGTCTACACGATGGACACGAGCGTCGAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGCCGGGCGGAGGCGAGGACAAGACCGGTTCGGCCAGCGCGACCAGCACCGACTCGTCGTCCGACCGCACCCCGATACGGCTCGACTCGACCGAGGAGCGTGACCACGAGAGCAGCTGGCCGCGGCAGAACTCGCTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAAGGAGAAGATCGGCAACGGGCGCTTCGGCACCGTGCATCGGGCGCTCTGGCACGGCGACGTGGCCGTGAAGCTGCTGAAGGAGGACTACGTGGCGGACGAGCGGACGCTGGAAGCGTTCAAGCTCGAGGTGGCCACGTTCAAGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGGCGCCTGCATGAAGCCGCCCCGGCTCGCGATCGTCACGTCGCTCTGCAAGGGCAACACGCTCTTCACGCACATCCATCTGCG] [+] EMBL BM616580 [CCGCCGATGCATGCCATCCATGCGTGCGGCGGCGGCCTGGACAGCAGTTCGGCCGGCTCCAGCTGCAACAGCTCGTCTCCCTCCAGCCCGGCGCTGCTTTCGTTGCCACCGCAAACACCCGCCACATCCAAGTACTCGCAGTTCAACTTCCCCGAGGTGTCGAACAGCATCGGCGGCGGCGGTGGAGGCGGCAATGGCGGTTCGCTGATGATGATGAACTACGCCAGCTCGATGGGCGGCGGTAGCAGCAGTGGCGGAATAACGATCGAAACGCACCCGATCGGGGGTGGGACGGGTGGTGCGGGCGGACTAGGCGGAAGCCTCGGCAGCAGCGGCGTCTACACGATGGACACGAGCGTCGAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGCCGGGCGGAGGCGAGGACAAGACCGGTTCGGCCAGCGCGACCAGCACCGACTCGTCGTCCGACCGCACCCCGATACGGCTCGACTCGACCGAGGAGCGTGACCACGAGAGCAGCTGGCCGCGGCAGAACTCGCTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAAGGAGAAGATCGGCAACGGGCGCTTCGGCACCGTGCATCGGGCGCTCTGGCACGGCGACGTGGCCGTGAAGCTGCTGAAGGAGGACTACGTGGCGGACGA ] [+] EMBL BM637733 [ ccgGCAGCGGCGTCTACACGATGGACACGAGCGTCGAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGCCGGGCGGAGGCGAGGACAAGACCGGTTCGGCCAGCGCGACCAGCACCGACTCGTCGTCCGACCGCACCCCGATACGGCTCGACTCGACCGAGGAGCGTGACCACGAGAGCAGCTGGCCGCGGCAGAACTCGCTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAAGGAGAAGATCGGCAACGGGCGCTTCGGCACCGTGCATCGGGCGCTCTGGCACGGCGACGTGGCCGTGAAGCTGCTGAAGGAGGACTACGTGGCGGACGAGCGGACGCTGGAAGCGTTCAAGCTCGAGGTGGCCACGTTCAAGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGGCGCCTGCATGAAGCCGCCCCGGCTCGCGATCGTCACGTCGCTCTGCAAGGGCAACACGCTCTTCACGCACATCCATCTGCG] consensusID : consensus_4125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [TGCCCGAGGTTTGTGCGGGCGGAGGCGAGGACAAGACGGTTCGGNCTAGACGCGACCAGCACCGAACTCGTCGTCCGACCGCACCCCGATATGGCTCGACTCGACCGAGGAGCGTGACCATNGAGAGCAGCTGGCCTGCGGCAGAACTCGCGTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAACGGAGAAGATCTGGCAACGGGCGCTTCTGGCACCGTGCATCGTGGCTGCTCTGGCACGGTGACGTGGCCGTGAAGCTGCTGAATGGAGGACTACGTGGCGGACGAGCTGGACGCTGGAAGCGTTCAAGCTCGAGTGTGGCCACGTTCAATGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGTGCGCCTGCATGAAGCCAGACTCCTGGCTCGCTGATCAGTCGACGTACTGCATCTGCAAGGAGCGAACACAGCTCTTCACGCACATCCATCTGCGACAAGGACAACGTTCAACTTGAACCGGACACACGCTGGTGGCGCAACAGATCTCGCGAGGGCATGGGCTATCTTGCACTGCGCGCGGCATCGTCCAAAAGGACCTG] [+] EMBL AL930847 [TGCCCGAGGTTTGTGCGGGCGGAGGCGAGGACAAGACGGTTCGGNCTAGACGCGACCAGCACCGAACTCGTCGTCCGACCGCACCCCGATATGGCTCGACTCGACCGAGGAGCGTGACCATNGAGAGCAGCTGGCCTGCGGCAGAACTCGCGTCTCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAACGGAGAAGATCTGGCAACGGGCGCTTCTGGCACCGTGCATCGTGGCTGCTCTGGCACGGTGACGTGGCCGTGAAGCTGCTGAATGGAGGACTACGTGGCGGACGAGCTGGACGCTGGAAGCGTTCAAGCTCGAGTGTGGCCACGTTCAATGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGTGCGCCTGCATGAAGCCAGACTCCTGGCTCGCTGATCAGTCGACGTACTGCATCTGCAAGGAGCGAACACAGCTCTTCACGCACATCCATCTGCGACAAGGACAACGTTCAACTTGAACCGGACACACGCTGGTGGCGCAACAGATCTCGCGAGGGCATGGGCTATCTTGCACTGCGCGCGGCATCGTCCAAAAGGACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4125#0 CCGCCGATGCATGCCATCCATGCGTGCGGCGGCGGCCTGGACAGCAGTTCGGCCGGCTCC 60 consensus_4125#1 ------------------------------------------------------------ consensus_4125#0 AGCTGCAACAGCTCGTCTCCCTCCAGCCCGGCGCTGCTTTCGTTGCCACCGCAAACACCC 120 consensus_4125#1 ------------------------------------------------------------ consensus_4125#0 GCCACATCCAAGTACTCGCAGTTCAACTTCCCCGAGGTGTCGAACAGCATCGGCGGCGGC 180 consensus_4125#1 ------------------------------------------------------------ consensus_4125#0 GGTGGAGGCGGCAATGGCGGTTCGCTGATGATGATGAACTACGCCAGCTCGATGGGCGGC 240 consensus_4125#1 ------------------------------------------------------------ consensus_4125#0 GGTAGCAGCAGTGGCGGAATAACGATCGAAACGCACCCGATCGGGGGTGGGACGGGTGGT 300 consensus_4125#1 ------------------------------------------------------------ consensus_4125#0 GCGGGCGGACTAGGCGGAAGCCTCGGCAGCAGCGGCGTCTACACGATGGACACGAGCGTC 360 consensus_4125#1 ------------------------------------------------------------ consensus_4125#0 GAGATACCGAAGCTGCAGTTCTCGGACGATCATAGCGTGC-CGGGCGGAGGCGAGGACAA 419 consensus_4125#1 --------------------------TGCCCGAGGTTTGTGCGGGCGGAGGCGAGGACAA 34 * * * ** ******************* consensus_4125#0 GACCGGTTCGGCCAG-CGCGACCAGCACCGA-CTCGTCGTCCGACCGCACCCCGATACGG 477 consensus_4125#1 GACGGTTCGGNCTAGACGCGACCAGCACCGAACTCGTCGTCCGACCGCACCCCGATATGG 94 *** * * * * ** *************** ************************* ** consensus_4125#0 CTCGACTCGACCGAGGAGCGTGACCA-CGAGAGCAGCTGGCC-GCGGCAGAACTCGC-TC 534 consensus_4125#1 CTCGACTCGACCGAGGAGCGTGACCATNGAGAGCAGCTGGCCTGCGGCAGAACTCGCGTC 154 ************************** ************** ************** ** consensus_4125#0 TCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAA-GGAGAAGATC-GGCA 592 consensus_4125#1 TCGCTGAAGGAGTGGGACATCCCGTACGACGATCTGCACCTGAACGGAGAAGATCTGGCA 214 ******************************************** ********** **** consensus_4125#0 ACGGGCGCTTC-GGCACCGTGCATCGGG--CGCTCTGGCACGGCGACGTGGCCGTGAAGC 649 consensus_4125#1 ACGGGCGCTTCTGGCACCGTGCATCGTGGCTGCTCTGGCACGGTGACGTGGCCGTGAAGC 274 *********** ************** * ************ **************** consensus_4125#0 TGCTGAA-GGAGGACTACGTGGCGGACGAGC-GGACGCTGGAAGCGTTCAAGCTCGAG-G 706 consensus_4125#1 TGCTGAATGGAGGACTACGTGGCGGACGAGCTGGACGCTGGAAGCGTTCAAGCTCGAGTG 334 ******* *********************** ************************** * consensus_4125#0 TGGCCACGTTCAA-GAAGACGCGCCACGAAAACGTGGTGCTGTTCATGG-GCGCCTGCAT 764 consensus_4125#1 TGGCCACGTTCAATGAAGACGCGCCACGAAAACGTGGTGCTGTTCATGGTGCGCCTGCAT 394 ************* *********************************** ********** consensus_4125#0 GAAGCCG---CCCCGGCTCGC-----GATCGTCACGTCGC-TCTGCAAGGGC--AACAC- 812 consensus_4125#1 GAAGCCAGACTCCTGGCTCGCTGATCAGTCGACGTACTGCATCTGCAAGGAGCGAACACA 454 ****** ** ******* *** * ** ********* ***** consensus_4125#0 GCTCTTCACGCACATCCATCTGCG------------------------------------ 836 consensus_4125#1 GCTCTTCACGCACATCCATCTGCGACAAGGACAACGTTCAACTTGAACCGGACACACGCT 514 ************************ consensus_4125#0 ------------------------------------------------------------ consensus_4125#1 GGTGGCGCAACAGATCTCGCGAGGGCATGGGCTATCTTGCACTGCGCGCGGCATCGTCCA 574 consensus_4125#0 ---------- consensus_4125#1 AAAGGACCTG 584 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||