These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 711 fasta sequence [GCAGCACGNATAGCGACGCGTNAACTCTAATATATTTTAAGTGAGAGTGGATCAGAGAGAGAGAAAGAGAGAGAAGCAAACGTATCAGCAGCGCGCGCAGTTGTTGGCAAACATCATATGACGCCCCCTTCACCCCTGGTCGGGTCGGGGGTGAAGCCACTGTCCTCTTCTCACCCTGGCCTAGAAGAAGAAGCGTGGAAATAGTTTAAGAGTGGTGTTTAATAATCGTTTGGCAAGTTCATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACATCCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTGGAATATGGGGCGGGAAAGGTGAAGATGAAGC-AGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACNAGATCGAACAAAATTAGTTACCCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGAAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAATTATGAATGGAACTTGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTTCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAG] [+] EMBL BX624215 [GCAGCACGNATAGCGACGCGTNAACTCTAATATATTTTAAGTGAGAGTGGATCAGAGAGAGAGAAAGAGAGAGAAGCAAACGTATCAGCAGCGCGCGCAGTTGTTGGCAAACATCATATGACGCCCCCTTCACCCCTGGTCGGGTCGGGGGTGAAGCCACTGTCCTCTTCTCACCCTGGCCTAGAAGAAGAAGCGTGGAAATAGTTTAAGAGTGGTGTTTAATAATCGTTTGGCAAGTTCATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACATCCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTGGAATATGGGGCGGGAAAGGTGAAGATGAAGC AGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACNAGATCGAACAAA ] [+] EMBL BX604581 [ GTGGTGTTTAATAATCGTTTGGCAAGTTCATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACATCCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTGGAATATGGGGCGGGAAAGGTGAAGATGAAGCGAGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGAAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAATTATGAATGGAACTTGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTTCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAG] consensusID : consensus_4129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [TCGCCCGAGGTGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGGAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAACTTATGAATGTAACTTGGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTCCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAGTTTTCAATACAGATTCTTGAATTCAAAACACTCTTCAGAAGACAGTACTTAGTGCACGCTAGGGGCGTGCGGTNTGAACTGTGTGTTTGTAGATNAATAGTTGGCAGTGTGCGATTTTCCTTCGTTGTTGTTACTAATGGCGAACGNAATATGTTCCATTCACTTGTCCGTCCCGTGCAAACCCAACG] [+] EMBL AL931602 [TCGCCCGAGGTGACATTGGTTTAAGTGCTTAGCTAGAAGAAAGAAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGGTAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCCGACGAGGATGAGGGTTTTTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGGAAGTGAGGGAAGTAAGTTTAAAGCTCTGGGAACTAACTTATGAATGTAACTTGGTTTTAAACCTCTCTCTCCTTTTTCTTTCGTTTCCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAGTTTTCAATACAGATTCTTGAATTCAAAACACTCTTCAGAAGACAGTACTTAGTGCACGCTAGGGGCGTGCGGTNTGAACTGTGTGTTTGTAGATNAATAGTTGGCAGTGTGCGATTTTCCTTCGTTGTTGTTACTAATGGCGAACGNAATATGTTCCATTCACTTGTCCGTCCCGTGCAAACCCAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4129#0 GCAGCACGNATAGCGACGCGTNAACTCTAATATATTTTAAGTGAGAGTGGATCAGAGAGA 60 consensus_4129#1 ------------------------------------------------------------ consensus_4129#0 GAGAAAGAGAGAGAAGCAAACGTATCAGCAGCGCGCGCAGTTGTTGGCAAACATCATATG 120 consensus_4129#1 ------------------------------------------------------------ consensus_4129#0 ACGCCCCCTTCACCCCTGGTCGGGTCGGGGGTGAAGCCACTGTCCTCTTCTCACCCTGGC 180 consensus_4129#1 ------------------------------------------------------------ consensus_4129#0 CTAGAAGAAGAAGCGTGGAAATAGTTTAAGAGTGGTGTTTAATAATCGTTTGGCAAGTTC 240 consensus_4129#1 ------------------------------------------------------------ consensus_4129#0 ATCGAGTGACGTATGCCAAAGCCATCGCGGAAGATTCTCCCCCCGTTGTGCAGACGACAT 300 consensus_4129#1 ------------------------------------------------------------ consensus_4129#0 CCATCGAACGATATTAACCGGTTTAGCATCTTCACCCGGTGGTTGAGACCGTTTGGGTTG 360 consensus_4129#1 ------------------------------------------------------------ consensus_4129#0 GAATATGGGGCGGGAAAGGTGAAGATGAAGCAGACATTGGTTTAAGTGCTTAGCTAGAAG 420 consensus_4129#1 ---------------------TCGCCCGAGGTGACATTGGTTTAAGTGCTTAGCTAGAAG 39 * ** **************************** consensus_4129#0 AAAGAAAAAAA-GTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGG 479 consensus_4129#1 AAAGAAAAAAAAGTACAAAACTTCCCTTTTCTACCCCACACTCCTACTCTCTTATACTGG 99 *********** ************************************************ consensus_4129#0 TAATCACAGGTAGAGACNAGATCGAACAAAATTAGTTACCCCCGACGAGGATGAGGGTTT 539 consensus_4129#1 TAATCACAGGTAGAGACAAGATCGAACAAAATTAGTTACCCC-GACGAGGATGAGGGTTT 158 ***************** ************************ ***************** consensus_4129#0 TTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGAAAGTGAGGGAAGTAAGTTTA 599 consensus_4129#1 TTTGAACTCCCGCTCCCCATAACTCCATAATCATAGAGGGAAGTGAGGGAAGTAAGTTTA 218 *************************************** ******************** consensus_4129#0 AAGCTCTGGGAACTAA-TTATGAATGGAACTTG-TTTTAAACCTCTCTCTCCTTTTTCTT 657 consensus_4129#1 AAGCTCTGGGAACTAACTTATGAATGTAACTTGGTTTTAAACCTCTCTCTCCTTTTTCTT 278 **************** ********* ****** ************************** consensus_4129#0 TCGTTTTCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAG------ 711 consensus_4129#1 TCGTTTCCGCTGTTGAAATGCTGCTTGCTTGTTTATTATTATAAACGTGTTAAGTTTTCA 338 ****** *********************************************** consensus_4129#0 ------------------------------------------------------------ consensus_4129#1 ATACAGATTCTTGAATTCAAAACACTCTTCAGAAGACAGTACTTAGTGCACGCTAGGGGC 398 consensus_4129#0 ------------------------------------------------------------ consensus_4129#1 GTGCGGTNTGAACTGTGTGTTTGTAGATNAATAGTTGGCAGTGTGCGATTTTCCTTCGTT 458 consensus_4129#0 ------------------------------------------------------------ consensus_4129#1 GTTGTTACTAATGGCGAACGNAATATGTTCCATTCACTTGTCCGTCCCGTGCAAACCCAA 518 consensus_4129#0 -- consensus_4129#1 CG 520 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||