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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1187 fasta sequence
[AGCAACAAAAAGGACTCNAATGGCAACAATAGCAAGAAGAAGCCGGAACCGAAGAACCGCGACAGTGCGATATGGTACGAGTATGGGTGTGTTTAGCGTGTATCGAAGTGTGTCCCCTCCCCAAGCGAAAAGCGTATTCAATGCAAGCATTTATTAGAAAACGAAGCATTGCAACCATAAGCCTATACGAGCAGTATTGTAGTGAGAGACAGAGAGAGGTGATGAAATAGGTGGCCTAGCATTTTTCGACTGATGATGGATGGCACGTTTTTGCTGCAGAAAGATGTGCAGGCGTGCGGATATGACGCCTACTGCGTTCCCCGCTCGAGAAGGCGATTGTACTTTTTTAATGCCGGCCGGTGCGTGTATGTGTGCGTTTAATGAACAACGTGCTTGCGTGTGCATGTGTGTGCGTGTTCGTCCATTCCGTACCAGCCCATATTTACCCAGTTAACAAGTGCTTTAACCTAAATACCACTTACAAAACACTCAACAGCAAAATAAGGCCTGAACAAAGTTTAATTTTAAAATAGGTCTTACGCGCACCCGTGTGATGCGTACGTTTTGGCGCATCTGTTTGGTTATTGCTCAATTGCGCGCTGCATGTCTCCCCCCGACACACACATTATGGNCTTTTCTTTTGCGCNAACTAATGCAGCTGCTTATTGAAACTATTGNCCAGATGAGTAAACTTTATCCCCAGTGCTTAGCGTTAATCTCTTCCCAAATGCCCTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTCGATACAGGGTTCCGATAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTCCCGGCTACAGGACAGTTCAAACAGACGCTAATGCAGATGTTTGAAGGAGAAAACATGAATCTCTGAAGCGAAACGAATGAAGCAGAGGAATGAATCACCATTGCCGTTATTAGCATTTGTATTTAATCCTTTTTTAGGTTTAAAAGAAAGCATCGCAAAGGATGTAGAGTGAGAGAGATTTTTAAGTGAAATAAAGGTATAAAATAATTATACTCATAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BX627194 [AGCAACAAAAAGGACTCNAATGGCAACAATAGCAAGAAGAAGCCGGAACCGAAGAACCGCGACAGTGCGATATGGTACGAGTATGGGTGTGTTTAGCGTGTATCGAAGTGTGTCCCCTCCCCAAGCGAAAAGCGTATTCAATGCAAGCATTTATTAGAAAACGAAGCATTGCAACCATAAGCCTATACGAGCAGTATTGTAGTGAGAGACAGAGAGAGGTGATGAAATAGGTGGCCTAGCATTTTTCGACTGATGATGGATGGCACGTTTTTGCTGCAGAAAGATGTGCAGGCGTGCGGATATGACGCCTACTGCGTTCCCCGCTCGAGAAGGCGATTGTACTTTTTTAATGCCGGCCGGTGCGTGTATGTGTGCGTTTAATGAACAACGTGCTTGCGTGTGCATGTGTGTGCGTGTTCGTCCATTCCGTACCAGCCCATATTTACCCAGTTAACAAGTGCTTTAACCTAAATACCACTTACAAAACACTCAACAGCAAAATAAGGCCTGAACAAAGTTTAATTTTAAAATAGGTCTTACGCGCACCCGTGTGATGCGTACGTTTTGGCGCATCTGTTTGGTTATTGCTCAATTGCGCGCTGCATGTCTCCCCCCGACACACACATTATGGNCTTTTCTTTTGCGCNAACTAATGCAGCTGCTTATTGAAACTATTGNCCAGATGAGTAAACTTTATCCCCA ]
[+] EMBL CNS08XRL [ AATTAATGCAGCTGCTTATTGAAACTATTGCACAGATGAGTAAACTTTATCCCAAGTGCTTAGCGTTAATCTCTTCCCAAATGCCCTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTCGATACAGGGTTCCGATAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTCCCGGCTACAGGACAGTTCAAACAGACGCTAATGCAGATGTTTGAAGGAGAAAACATGAATCTCTGAAGCGAAACGAATGAAGCAGAGGAATGAATCACCATTGCCGTTATTAGCATTTGTATTTAATCCTTTTTTAGGTTTAAAAGAAAGCATCGCAAAGGATGTAGAGTGAGAGAGATTTTTAAGTGAAATAAAGGTATAAAATAATTATACTCATAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[CTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTTGAAACTAGTATTGTACGAACTAAATTGTAAGATTTGTATCGCGCCCGCTATCAACGTTTCCCTGCGCCCCGCCTTATCATTGGGCTCTCGATCGAAGCGTGAATGTAGTGTGTGTAACCTATACCACAACGAAATACCACTAACATACTTTCGTTTTTGTCTTGTGATAACACTTAAATGATATTTTGTTTGCCCTCCCTCCCCGAACATTTACCAACCATTTTTGAAAAGCGCAATTTTATTACTCCTCGGATGCTCGTGTTTTAGAGAGTTGTTGTGTAACAGGACTGTTCGATACAGGGTTCCGATAAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTTCCGGTTACAGGACAGATAAAACAGACGCTAATGCAAATGTTTGAAGGAGGAAAACATGAATCTGTGAAGCGAAACCAGTGTTGCGAACGGTGATAGTCGTCGACATAAAATTTTACAAAATGATACTTTTTGAAGCATCGCATTCTAGATCCACGCATTCATTCGACAATCACGGAAAAAAATATCATTTGACACGATGATATTTTTTCTGCTACNAGCATTTGACTTTTTGATTTTTCCGTACCTCAGGNGAACTAGATCTTCAT]
[+] EMBL BX626615 [CTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAATACGTTTACATATATCTCGCTGCTATCCATTTTGAAACTAGTATTGTACGAACTAAATTGTAAGATTTGTATCGCGCCCGCTATCAACGTTTCCCTGCGCCCCGCCTTATCATTGGGCTCTCGATCGAAGCGTGAATGTAGTGTGTGTAACCTATACCACAACGAAATACCACTAACATACTTTCGTTTTTGTCTTGTGATAACACTTAAATGATATTTTGTTTGCCCTCCCTCCCCGAACATTTACCAACCATTTTTGAAAAGCGCAATTTTATTACTCCTCGGATGCTCGTGTTTTAGAGAGTTGTTGTGTAACAGGACTGTTCGATACAGGGTTCCGATAAAAAAAAAAAACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTTCCGGTTACAGGACAGATAAAACAGACGCTAATGCAAATGTTTGAAGGAGGAAAACATGAATCTGTGAAGCGAAACCAGTGTTGCGAACGGTGATAGTCGTCGACATAAAATTTTACAAAATGATACTTTTTGAAGCATCGCATTCTAGATCCACGCATTCATTCGACAATCACGGAAAAAAATATCATTTGACACGATGATATTTTTTCTGCTACNAGCATTTGACTTTTTGATTTTTCCGTACCTCAGGNGAACTAGATCTTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4131#0 AGCAACAAAAAGGACTCNAATGGCAACAATAGCAAGAAGAAGCCGGAACCGAAGAACCGC 60
consensus_4131#1 ------------------------------------------------------------
consensus_4131#0 GACAGTGCGATATGGTACGAGTATGGGTGTGTTTAGCGTGTATCGAAGTGTGTCCCCTCC 120
consensus_4131#1 ------------------------------------------------------------
consensus_4131#0 CCAAGCGAAAAGCGTATTCAATGCAAGCATTTATTAGAAAACGAAGCATTGCAACCATAA 180
consensus_4131#1 ------------------------------------------------------------
consensus_4131#0 GCCTATACGAGCAGTATTGTAGTGAGAGACAGAGAGAGGTGATGAAATAGGTGGCCTAGC 240
consensus_4131#1 ------------------------------------------------------------
consensus_4131#0 ATTTTTCGACTGATGATGGATGGCACGTTTTTGCTGCAGAAAGATGTGCAGGCGTGCGGA 300
consensus_4131#1 ------------------------------------------------------------
consensus_4131#0 TATGACGCCTACTGCGTTCCCCGCTCGAGAAGGCGATTGTACTTTTTTAATGCCGGCCGG 360
consensus_4131#1 ------------------------------------------------------------
consensus_4131#0 TGCGTGTATGTGTGCGTTTAATGAACAACGTGCTTGCGTGTGCATGTGTGTGCGTGTTCG 420
consensus_4131#1 ------------------------------------------------------------
consensus_4131#0 TCCATTCCGTACCAGCCCATATTTACCCAGTTAACAAGTGCTTTAACCTAAATACCACTT 480
consensus_4131#1 ----------------CTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATTA 44
* * * * * * ***** ** * *
consensus_4131#0 ACAAAACACTCAACAGCAAAATAAGGCCTGAACAAAGTTTAATTTTAAAATAGGTCTTAC 540
consensus_4131#1 TGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAAT 104
***** * * *** * * **** ***** * ** * *
consensus_4131#0 GCGCACCCGTGTGATGCG----TACGTTTTGGCGCATCTGTTTGGTTATTGCTCAATTGC 596
consensus_4131#1 ACGTTTACATATATCTCGCTGCTATCCATTTTGAAACTAGTATTGTACGAACTAAATTGT 164
** * * * ** ** ** * ** * ** ** *****
consensus_4131#0 GCGCTGCATGTCTCCCCCCGACACACACATTATGGNCTTTTCTTTTGCGCNAACTAATGC 656
consensus_4131#1 AAGATTTGTATCGCGCCC-GCTATCAACGTT---TCCCTGCGCCCCGCCTTATC--ATTG 218
* * * ** * *** * * ** ** * * ** * * **
consensus_4131#0 AGCTGCTTATTGAAACTATTGNCCAG-ATGAGTAAACTTTATCCCCAGTGCTTAGCGTTA 715
consensus_4131#1 GGCTCTCGATCGAAGCGTGAATGTAGTGTGTGTAACCTATACCACAACGAAATACCACTA 278
*** ** *** * ** ** **** ** ** * * * ** * **
consensus_4131#0 ATCTCTTCCCAAATGCCCTACACGCGCACCGCAAACAACGAACCCTGTTTACCATGTATT 775
consensus_4131#1 ACATACTTTCGTTTTTGTCTTGTG-ATAACACTTAAATGATATTTTGTTTGCCCTCCCTC 337
* * * * * * * * * * * * ***** ** * *
consensus_4131#0 ATGAAAACGTAAGGAATCTCTTTAAAAGTATCTCCATGTTTTGTTTTACATTAAAATTAA 835
consensus_4131#1 CCCGAACATTTACCAACCATTTTTGAAA-AGCGCAAT-TTTATTACTCCTCGGATGCTCG 395
** * * ** * *** ** * * * ** *** * * * * *
consensus_4131#0 TACGTTT-ACATATATCTCGCTGCTATCCATTTCGATACAGGGTTCCGATAAAAAAAAAA 894
consensus_4131#1 TGTTTTAGAGAGTTGTTGTGTAACAGGACTGTTCGATACAGGGTTCCGATAAAAAAAAAA 455
* ** * * * * * * * *****************************
consensus_4131#0 A-CAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTCCCGGC 953
consensus_4131#1 AACAAACAAAGGAGAAGAAATCAAAATTATACCACTAGGATAATATGCTTCCGTTCCGGT 515
* **************************************************** ****
consensus_4131#0 TACAGGACAGTTCAAACAGACGCTAATGCAGATGTTTGAAGGAG-AAAACATGAATCTCT 1012
consensus_4131#1 TACAGGACAGATAAAACAGACGCTAATGCAAATGTTTGAAGGAGGAAAACATGAATCTGT 575
********** * ***************** ************* ************* *
consensus_4131#0 GAAGCGAAACGAATGAAGCAGA-GGAATGAATCACCATTGCCGTTATTAGCA-------- 1063
consensus_4131#1 GAAGCGAAACCAGTGTTGCGAACGGTGATAGTCGTCGACATAAAATTTTACAAAATGATA 635
********** * ** ** * ** * ** * ** **
consensus_4131#0 -TTTGTATTTAATCCTTTTTTAGGTTTAAA---------AGAAAGCATCGCAAAGGATGT 1113
consensus_4131#1 CTTTTTGAAGCATCGCATTCTAGATCCACGCATTCATTCGACAATCACGGAAAAAAATAT 695
*** * *** ** *** * * ** ** * *** ** *
consensus_4131#0 AGAGTGAGA-GAGATTTTTAAGTGAAATAAAGGTATAAAATAATTATACTCATAAAAAAA 1172
consensus_4131#1 CATTTGACACGATGATATTTTTTCTGCTACNAGCATTTGACTTTTTGATTTTTCCGTACC 755
*** * ** * ** * ** * ** * ** * * * *
consensus_4131#0 AAAAAAAAAAAAAAA------ 1187
consensus_4131#1 TCAGGNGAACTAGATCTTCAT 776
* ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||