cluster # 4140

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Anopheles gambiae
cluster # 4140 cluster # 4140 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4140#0 length = 693 sequences # 1

consensus_4140#1 length = 687 sequences # 1
consensus_4140#2 length = 622 sequences # 1

consensusID : consensus_4140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CCGGTCGCTTTAAGTGGACGCAGTCGTGTTTGGTCCGCGATGAGGATTTCGTTGTTCAGTTTTGTTGGCTTCTTGCTGTCGCTGGGAGTTACTGTGAATGGGGCCAATATACTCTGCCTGATGGGAGTTGCCAGCCCAAGTCATCATATCTGGAATCGAGCTATTATGGACGGGCTAGCCCGCGCTGGACACAATCTAACCATCCTGTCGGCTGATGTGGAAAAGAACCAACCGAATAACGTCCACTACGTGCATCTGGAGGAAATCTATCCCACGCTGTACAGCGGTCCCGACTCGATCGATCTGATGGAAATGGCGAACGAAAATGTGTTCAAAAGTGTCGTCTCCTTCTATCGTGACTTTGTAGTGCATGAATGTGCTGGAACGCTGAAATCGAAAGGTTTACAGCAGGTGATGGACTATCCGGACGATTTTCGGTTCGATCTTGTGCTGCACGACTTCACCTGTGGACCGTGTTTGCTTGGTTTGCTGCACAAGTTCAACTATCCGCCGTTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTTCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTTAACGGATGTGGTCTACCGAAACTATGTTTC]

[+] EMBL BM579004             [CCGGTCGCTTTAAGTGGACGCAGTCGTGTTTGGTCCGCGATGAGGATTTCGTTGTTCAGTTTTGTTGGCTTCTTGCTGTCGCTGGGAGTTACTGTGAATGGGGCCAATATACTCTGCCTGATGGGAGTTGCCAGCCCAAGTCATCATATCTGGAATCGAGCTATTATGGACGGGCTAGCCCGCGCTGGACACAATCTAACCATCCTGTCGGCTGATGTGGAAAAGAACCAACCGAATAACGTCCACTACGTGCATCTGGAGGAAATCTATCCCACGCTGTACAGCGGTCCCGACTCGATCGATCTGATGGAAATGGCGAACGAAAATGTGTTCAAAAGTGTCGTCTCCTTCTATCGTGACTTTGTAGTGCATGAATGTGCTGGAACGCTGAAATCGAAAGGTTTACAGCAGGTGATGGACTATCCGGACGATTTTCGGTTCGATCTTGTGCTGCACGACTTCACCTGTGGACCGTGTTTGCTTGGTTTGCTGCACAAGTTCAACTATCCGCCGTTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTTCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTTAACGGATGTGGTCTACCGAAACTATGTTTC]




>consensus_4140#0
CCGGTCGCTTTAAGTGGACGCAGTCGTGTTTGGTCCGCGATGAGGATTTCGTTGTTCAGT
TTTGTTGGCTTCTTGCTGTCGCTGGGAGTTACTGTGAATGGGGCCAATATACTCTGCCTG
ATGGGAGTTGCCAGCCCAAGTCATCATATCTGGAATCGAGCTATTATGGACGGGCTAGCC
CGCGCTGGACACAATCTAACCATCCTGTCGGCTGATGTGGAAAAGAACCAACCGAATAAC
GTCCACTACGTGCATCTGGAGGAAATCTATCCCACGCTGTACAGCGGTCCCGACTCGATC
GATCTGATGGAAATGGCGAACGAAAATGTGTTCAAAAGTGTCGTCTCCTTCTATCGTGAC
TTTGTAGTGCATGAATGTGCTGGAACGCTGAAATCGAAAGGTTTACAGCAGGTGATGGAC
TATCCGGACGATTTTCGGTTCGATCTTGTGCTGCACGACTTCACCTGTGGACCGTGTTTG
CTTGGTTTGCTGCACAAGTTCAACTATCCGCCGTTGGTCAGCGTGACCGCGTTTAATAAT
CCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTTCCGTTCTAC
TCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGT
CTTAACGGATGTGGTCTACCGAAACTATGTTTC

consensusID : consensus_4140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTGAATGTGCTGGAACGCTGAAATCGAAAGGTTTGCAGCGAGTGATGGACTACCCGGACGATTTTCGGTTCGATCTGGTACTACACGACTTCACCTGTGGACCGTGTTTGCTCGGTTTGCTGCACAAGTTCAACTATCCGCCGCTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGATGCTGGTGAATGCACACTACTCGATCGATTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGATCAGTTGGACAGTGGCCGGCAGCGTATGATAGTGGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGT]

[+] EMBL BM578879             [CCGCGGACGCGTGGGCGGACGCGTGGGTGAATGTGCTGGAACGCTGAAATCGAAAGGTTTGCAGCGAGTGATGGACTACCCGGACGATTTTCGGTTCGATCTGGTACTACACGACTTCACCTGTGGACCGTGTTTGCTCGGTTTGCTGCACAAGTTCAACTATCCGCCGCTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGATGCTGGTGAATGCACACTACTCGATCGATTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGATCAGTTGGACAGTGGCCGGCAGCGTATGATAGTGGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGT]




>consensus_4140#1
CCGCGGACGCGTGGGCGGACGCGTGGGTGAATGTGCTGGAACGCTGAAATCGAAAGGTTT
GCAGCGAGTGATGGACTACCCGGACGATTTTCGGTTCGATCTGGTACTACACGACTTCAC
CTGTGGACCGTGTTTGCTCGGTTTGCTGCACAAGTTCAACTATCCGCCGCTGGTCAGCGT
GACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTC
GTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCA
CAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAAT
CGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAG
CCAGCGAACGAAGATGATGCTGGTGAATGCACACTACTCGATCGATTTTCCTGAGGCGGC
TCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCTCCACTGCCCGC
CGATTTGGAGCAGTTCGTTAACGCAAGCCGCAAAGGAGCCGTGCTGTTCTCGCTCGGTAC
GAACGTGCGTAGTGATCAGTTGGACAGTGGCCGGCAGCGTATGATAGTGGGAAGCGCTCC
GTCAGCTACCGGACTATCACTTTCTGT

consensusID : consensus_4140#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [AAGAATCGCCACGAGGNGCNAACGTTTATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGGATGCTGGGTCAATGCACACGTACTCGATCGAGTTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCGTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCGAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGAGTCAGTTGGACAGTGGCCGGCAGGCGTATGATAGTGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGTGGAAGTTTGAAACGGAGCTACGGCATTCCGGTGCCCAAAAAATGTGATCGTGCGCCCGTGGATGCACAGAATGATCTGCGTGGCGGCATNCA]

[+] EMBL BX469275             [AAGAATCGCCACGAGGNGCNAACGTTTATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGGATGCTGGGTCAATGCACACGTACTCGATCGAGTTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCGTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCGAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGAGTCAGTTGGACAGTGGCCGGCAGGCGTATGATAGTGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGTGGAAGTTTGAAACGGAGCTACGGCATTCCGGTGCCCAAAAAATGTGATCGTGCGCCCGTGGATGCACAGAATGATCTGCGTGGCGGCATNCA]




>consensus_4140#2
AAGAATCGCCACGAGGNGCNAACGTTTATAATCCACCCTACTCGACGGAGGTGATCGGGG
GACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATT
TCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATG
TTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCT
ACGCTCCCGAGCTAAGCCAGCGAACGAAGATGGATGCTGGGTCAATGCACACGTACTCGA
TCGAGTTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGT
GAACCTGCGTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCGAAAGGAG
CCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGAGTCAGTTGGACAGTGGCCGGCAG
GCGTATGATAGTGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGTGGAAGTTTGA
AACGGAGCTACGGCATTCCGGTGCCCAAAAAATGTGATCGTGCGCCCGTGGATGCACAGA
ATGATCTGCGTGGCGGCATNCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4140#1      CCGCGGACGCGTGGGCGGACGCGTGGGTGAATGTGCTGGAACGCTGAAATCGAAAGGTTT 60
consensus_4140#2      ------------------------------------------------------------
consensus_4140#0      ------------------------------------------------------------
                                                                                  

consensus_4140#1      GCAGCGAGTGATGGACTACCCGGACGATTTTCGGTTCGATCTGGTACTACACGACTTCAC 120
consensus_4140#2      ------------------------------------------------------------
consensus_4140#0      --------------------------CCGGTCGCTTTAAGTGGACGCAGTCGTGTTTGGT 34
                                                                                  

consensus_4140#1      CTGTGGACCGTGTTTGCTCGGTTTGCTGCACAAGTTCAACTA-TCCGCCGCTGGTCAGCG 179
consensus_4140#2      --------------------------------------AAGA-ATCGCCACGAG---GNG 18
consensus_4140#0      CCGCGATGAGGATTTCGTTGTTCAGTTTTGTTGGCTTCTTGCTGTCGCTGGGAGTTACTG 94
                                                                   ***     *     *

consensus_4140#1      TGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACT 239
consensus_4140#2      CNAACG---TTTATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACT 75
consensus_4140#0      TGAATG---GGGCCAATATACTCTGCCTGATGGGAGTTGCCAGCCCAAGTCATCATATCT 151
                        *  *        ***  ** ** *  ** **  **   * *   *  * *   *  **

consensus_4140#1      CGTA-CGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTT 298
consensus_4140#2      CGTA-CGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTT 134
consensus_4140#0      GGAATCGAGCTATTATGGACGGGCTAGCCCGCGCTGGACACAA--TCTAACCATCCTGTC 209
                       * * **  *  ** *   **  *     **    *****  *  *    *** *  ** 

consensus_4140#1      CAC-AACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCG 357
consensus_4140#2      CAC-AACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCG 193
consensus_4140#0      GGCTGATGTGGAAAAGAACCAACCGAATAACGTCCACTA----CGTGCATCTGGAG--GA 263
                        *  *   *         * * ** **   *** **        **  **         

consensus_4140#1      AATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCT 417
consensus_4140#2      AATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCT 253
consensus_4140#0      AATCTATCCCACGCTGT-ACAGCGGTCCCGACTCGATCGATCTGATGGAAATGGCGAACG 322
                      **** ** * * * **  * **   * ***   ****     *        *  *** * 

consensus_4140#1      AAGCCAGCGAACGAAGATG-ATGCTGG-TGAATGCACAC-TACTCGATCGA--TTTTCCT 472
consensus_4140#2      AAGCCAGCGAACGAAGATGGATGCTGGGTCAATGCACACGTACTCGATCGAG-TTTTCCT 312
consensus_4140#0      AAAAT-GTGTTCAAAAGTGTCGTCTCCTTCTATCGTGACTTTGTAGTGCATGAATGTGCT 381
                      **    * *  * **  **    **   *  **    ** *  * *  *     * * **

consensus_4140#1      GAGGCGGCTCCACCTAAC--CTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGC-- 528
consensus_4140#2      GAGGCGGCTCCACCTAAC--CTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCG- 369
consensus_4140#0      GGAACGCTGAAATCGAAAGGTTTACAGCAGGTGATGGACTATCCGGACGATTTTCGGTTC 441
                      *   **     * * **    * *   ***  * ******      ***     * *   

consensus_4140#1      --TCCACTGCCCGCCGATTTG----GAGCAGTTCGTTAACGCAAGCCGC-AAAGGAGCCG 581
consensus_4140#2      --TCCACTGCCCGCCGATTTG----GAGCAGTTCGTTAACGCAAGCCGCGAAAGGAGCCG 423
consensus_4140#0      GATCTTGTGCTGCACGACTTCACCTGTGGACCGTGTTTGCTTGGTTTGCTGCACAAGTTC 501
                        **   ***    *** **     * * *    ***  *       **   *  **   

consensus_4140#1      TGCTGTTC----TCGCTCGGTACGAACGTGCGTAGTGA-TCAGTTGGACAGTGGCCGGCA 636
consensus_4140#2      TGCTGTTC----TCGCTCGGTACGAACGTGCGTAGTGAGTCAGTTGGACAGTGGCCGGCA 479
consensus_4140#0      AACTATCCGCCGTTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTG 561
                        ** * *    * * ** *   ** ** *  ** * *  **        *  *  **  

consensus_4140#1      G-CGTATGATAGTGGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGT-------- 687
consensus_4140#2      GGCGTATGATAGTGG-AAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGTGGAAGTTT 538
consensus_4140#0      ATCGGGGGACATAAG--TTTTACTCGTACGTT-CCGTTCTACT-CGCTCAGCTACGGCAC 617
                        **   ** *   *         ***  * * ***  ***   *  ** *         

consensus_4140#1      ------------------------------------------------------------
consensus_4140#2      GAAACGGAGCTACGGCATTCCGGTGCCCAAAAAATGTGATCGTGCGCCCGTGGATGCACA 598
consensus_4140#0      GGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTTAACGGATGTGGTCT 677
                                                                                  

consensus_4140#1      ------------------------
consensus_4140#2      GAATGATCTGCGTGGCGGCATNCA 622
consensus_4140#0      ACCGAAACTATGTTTC-------- 693