These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 792 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCAACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTAACGTATGGTGCGGAGCAGGACAATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTCGCCTGGTACAATGGACTGCCCGGGTTTGAGAATCTTAATCCCGACCTTAGCGGGAAATCTTTGACCCTGCTGGGTCAGGGAAATGTTGCCGTCGACGTCGCACGCATCGTTCTGTCCAGTGTGGATGATTTG] [+] EMBL BM635666 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCAACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTAACGTATGGTGCGGAGCAGGACAATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTCGCCTGGTACAATGGACTGCCCGGGTTT ] [+] EMBL BM592460 [ ccgAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGCAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTTACGTATGGTGCGGAGCAGGACAATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTCGCCTGGTACAATGGACTGCCCGGGTTTGAGAATCTTAATCCCGACCTTAGCGGGAAATCTTTGACCCTGCTGGGTCAGGGAAATGTTGCCGTCGACGTCGCACGCATCGTTCTGTCCAGTGTGGATGATTTG] consensusID : consensus_4151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [AGAATCGCCCGAGGTTTCACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGAACATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGGCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTG] [+] EMBL AL931607 [AGAATCGCCCGAGGTTTCACATTCGTCACGCTTTTACGACCCTCCACGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGTTACATTATCGTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAATTGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCGGTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCACGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAACATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTGAGATTCGGCGTTGCACCCGAACATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAAACGGGCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACCCTAGAAGAGCTGCGAGAACGATATCATGCTGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4151#0 CCGCCCACGCGTCCGCCCACGCGTCCGCAGCAACATTCGTCACGCTTTTACGACCCTCCA 60 consensus_4151#1 --------AGAATCGCCCGAGGTTTC------ACATTCGTCACGCTTTTACGACCCTCCA 46 ***** * * * **************************** consensus_4151#0 CGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGT 120 consensus_4151#1 CGCATAGTTTATCTGATAAGCGTAGCTGTTGCAGTATAGAACAGTGGCAAATGCTCGCGT 106 ************************************************************ consensus_4151#0 TACATTATCGTTTTTGCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAAT 180 consensus_4151#1 TACATTATCGTTTT-GCTAACCATTGTGCAAATCATCTCACCGCTAGGTGTTGTCTCAAT 165 ************** ********************************************* consensus_4151#0 TGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCG 240 consensus_4151#1 TGGGGTGCAAAGCGTTTGCTTGGCAGCATGTTGCGGAAAGTATTACCTACCTCAAGCGCG 225 ************************************************************ consensus_4151#0 GTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCA 300 consensus_4151#1 GTGAAAGTTGCCCGCAAATGTGTGTTCAGGAATGCCAGCACGGCGGCACCGATACGGCCA 285 ************************************************************ consensus_4151#0 CGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAA 360 consensus_4151#1 CGGATCTGTATCGTAGGTGCGGGACCGGCTGGTTTCTACACTGCCCAGTACATCCTCAAA 345 ************************************************************ consensus_4151#0 CATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTG 420 consensus_4151#1 CATTTGGATAACTCCGACATTGACATCGTGGAGAAGCTGCCGGTTCCGTTCGGATTGGTG 405 ************************************************************ consensus_4151#0 AGATTCGGCGTTGCACCCGACCATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAA 480 consensus_4151#1 AGATTCGGCGTTGCACCCGAACATCCCGAGGTGAAGAATGTCATCAATACGTTTACCAAA 465 ******************** *************************************** consensus_4151#0 ACGGCCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACC 540 consensus_4151#1 ACGGGCGAGAACCCGCGTGTTCGCTTTCTTGGAAATCTTTGCTTGGGAAAGGATTTCACC 525 **** ******************************************************* consensus_4151#0 CTAGAAGAGCTGCGAGAACGATATCATGCTGTTTTGCTAACGTATGGTGCGGAGCAGGAC 600 consensus_4151#1 CTAGAAGAGCTGCGAGAACGATATCATGCTGTTG-------------------------- 559 ********************************* consensus_4151#0 AATACGCTGAACATTCCGAACGAAAATTTGCAGAACGTACTCTCCGCCCGAGAGTTCGTC 660 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 GCCTGGTACAATGGACTGCCCGGGTTTGAGAATCTTAATCCCGACCTTAGCGGGAAATCT 720 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 TTGACCCTGCTGGGTCAGGGAAATGTTGCCGTCGACGTCGCACGCATCGTTCTGTCCAGT 780 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 GTGGATGATTTG 792 consensus_4151#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||