cluster # 4160

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Anopheles gambiae
cluster # 4160 cluster # 4160 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4160#0 length = 769 sequences # 2

consensus_4160#1 length = 416 sequences # 1

consensusID : consensus_4160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 769
fasta sequence

                              [ATGAAACGATAATGTAATCAAGATTCACGTTGCAATAACTGCGCAACAGTGATGAAAGTGTAATAAGAATATCATAGAAATATCGATCGAGGTTGCTGTAGTAGATGGACTGGTAGATTTCGTTCTGTACGGTACCGA-AG-AAACGCTGCAAAAGAGATAGTTCGTTTTCTTCCGCTTGTCCTCCTAACAGTGACGTTATGAGACAGAAGCATAGTTTCGTTCGTCTGTGTTCGCTAGAGTGAGTGCACTTTTGCTTTCAAGATGTCGTGCCCAGGATGTCGGGGTTTCATGCGTTCGCCTGTTCGCCTTATTATGCTTTCGCCCCGGGTATCTTGCCCAGCACCTTCGATAGGTCAACCCCGGTCAGGGCATTGATGGCTGGAGGCAGCTGTCCAACGAGACGCGTCACATCGCCCGTCGTTTGATCGTTGCCACCGATCAGAACGATCTCTTCTGTCTTCGCCAATGGCGCCGCAACTTCAGCTGCGATCTTAGGCAGTGATTCGAGCACGATATTCATGATGGCCGCATCGCCGTACATCTTGTATACGTTCGCCTTCATACGCATCCGTTCCGCTTCCGCTTTTCCGACCTGCTCGATGGCGTACGCTTCCGCCGATCCGATCTTCTTGATGCGCTCTGCCTCGGCCCGTGCGCTTTCGACCGTTTGCGTGCGTTTGCCCTCGGCAATCGGTAGCACGCGGTAGCTCTCCGCCTCCGCCGGCAGCTTCACCGTGGCGTTCAGTTCGCAATCCTTGCGATTGATTTC]

[+] EMBL CNS08JHJ             [ATGAAACGATAATGTAATCAAGATTCACGTTGCAATAACTGCGCAACAGTGATGAAAGTGTAATAAGAATATCATAGAAATATCGATCGAGGTTGCTGTAGTAGATGGACTGGTAGATTTCGTTCTGTACGGTACCGA AG AAACGCTGCAAAAGAGATAGTTCGTTTTCTTCCGCTTGTCCTCCTAACAGTGACGTTATGAGACAGAAGCATAGTTTCGTTCGTCTGTGTTCGCTAGAGTGAGTGCACTTTTGCTTTCAAGATGTCGTGCCCAGGATGTCGGGGTTTCATGCGTTCGCCTGTTCGCCTTATTATGCTTTCGCCCCGGGTATCTTGCCCAGCACCTTCGATAGGTCAACCCCGGTCAGGGCATTGATGGCTGGAGGCAGCTGTCCAACGAGACGCGTCACATCGCCCGTCGTTTGATCGTTGCCACCGATCAGAACGATCTCTTCTGTCTTCGCCAATGGCGCCGCAACTTCAGCTGCGATCTTAGGCAGTGATTCGAGCACGATATTCATGATGGCCGCATCGCCGTACATCTTGTATACGTTCGCCTTCATACGCATCCGTTCCGCTTCCGCTTTTCCGACCTGCTCGATGGCGTACGCTTCCGCCGATCCGATCTTCTTGATGCGCTCTGCCTCGGCCCGTGCGCTTTCGACCGTTTGCGTGCGTTTGCCCTCGGCAATCGGTA                                                                         ]
[+] EMBL CNS09J0Y             [                                                                                        GAGGTTGCTGTAGTAGATGGACTGGTAGATTTCGTTCTGTACGGTACCGAGAGAAAACGCTGCAAAAGAGATAGTTCGTTTTCTTCCGCTTGTCCTCCTAACAGTGACGTTATGAGACAGAAGCATAGTTTCGTTCGTCTGTGTTCGCTAGAGTGAGTGCACTTTTGCTTTCAAGATGTCGTGCCCAGGATGTCGGGGTTTCATGCGTTCGCCTGTTCGCCTTATTATGCTTTCGCCCCGGGTATCTTGCCCAGCACCTTCGATAGGTCAACCCCGGTCAGGGCATTGATGGCTGGAGGCAGCTGTCCAACGAGACGCGTCACATCGCCCGTCGTTTGATCGTTGCCACCGATCAGAACGATCTCTTCTGTCTTCGCCAATGGCGCCGCAACTTCAGCTGCGATCTTAGGCAGTGATTCGAGCACGATATTCATGATGGCCGCATCGCCGTACATCTTGTATACGTTCGCCTTCATACGCATCCGTTCCGCTTCCGCTTTTCCGACCTGCTCGATGGCGTACGCTTCCGCCGATCCGATCTTCTTGATGCGCTCTGCCTCGGCCCGTGCGCTTTCGACCGTTTGCGTGCGTTTGCCCTCGGCAATCGCTTGCACGCGGTAGCTCTCCGCCTCCGCCGGCAGCTTCACCGTGGCGTTCAGTTCGCAATCCTTGCGATTGATTTC]




>consensus_4160#0
ATGAAACGATAATGTAATCAAGATTCACGTTGCAATAACTGCGCAACAGTGATGAAAGTG
TAATAAGAATATCATAGAAATATCGATCGAGGTTGCTGTAGTAGATGGACTGGTAGATTT
CGTTCTGTACGGTACCGAAGAAACGCTGCAAAAGAGATAGTTCGTTTTCTTCCGCTTGTC
CTCCTAACAGTGACGTTATGAGACAGAAGCATAGTTTCGTTCGTCTGTGTTCGCTAGAGT
GAGTGCACTTTTGCTTTCAAGATGTCGTGCCCAGGATGTCGGGGTTTCATGCGTTCGCCT
GTTCGCCTTATTATGCTTTCGCCCCGGGTATCTTGCCCAGCACCTTCGATAGGTCAACCC
CGGTCAGGGCATTGATGGCTGGAGGCAGCTGTCCAACGAGACGCGTCACATCGCCCGTCG
TTTGATCGTTGCCACCGATCAGAACGATCTCTTCTGTCTTCGCCAATGGCGCCGCAACTT
CAGCTGCGATCTTAGGCAGTGATTCGAGCACGATATTCATGATGGCCGCATCGCCGTACA
TCTTGTATACGTTCGCCTTCATACGCATCCGTTCCGCTTCCGCTTTTCCGACCTGCTCGA
TGGCGTACGCTTCCGCCGATCCGATCTTCTTGATGCGCTCTGCCTCGGCCCGTGCGCTTT
CGACCGTTTGCGTGCGTTTGCCCTCGGCAATCGGTAGCACGCGGTAGCTCTCCGCCTCCG
CCGGCAGCTTCACCGTGGCGTTCAGTTCGCAATCCTTGCGATTGATTTC

consensusID : consensus_4160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [TCAANGCGGAATCAGCGAGCGTGATAGCAAGTGTGGAGGATTTGACGCTTGAACTGTGTATACACGTTGGACGCGGCCGCGGCGATCTCGTCTCGTGCATTTCCAGCCTACCGAACGCAATGCTTTGCGTTCAATCATCGTGTGCAATACNNAAGAATTAACATGTAACGGAAGGCCAAANACCTAANATAANTACGTAGAATAAAAGCAATAGATCCCATAACCATGAAACGATAATGTAATCAAGATTCACGTTGCAATAACTGCGCAGCAAAGTGATGCAAGTGTAATAAGAATATCATAGAAATATCGATCGAGGTTGCTGTAGTAGATGGACTGGTAGATTTCGTTCTGTACGGTACCGAAGGTGAACGCTGCAAAAGAGATAGTTANACCTCGTGGCGATTCTGCCTCGA]

[-] EMBL BX466622             [TCAANGCGGAATCAGCGAGCGTGATAGCAAGTGTGGAGGATTTGACGCTTGAACTGTGTATACACGTTGGACGCGGCCGCGGCGATCTCGTCTCGTGCATTTCCAGCCTACCGAACGCAATGCTTTGCGTTCAATCATCGTGTGCAATACNNAAGAATTAACATGTAACGGAAGGCCAAANACCTAANATAANTACGTAGAATAAAAGCAATAGATCCCATAACCATGAAACGATAATGTAATCAAGATTCACGTTGCAATAACTGCGCAGCAAAGTGATGCAAGTGTAATAAGAATATCATAGAAATATCGATCGAGGTTGCTGTAGTAGATGGACTGGTAGATTTCGTTCTGTACGGTACCGAAGGTGAACGCTGCAAAAGAGATAGTTANACCTCGTGGCGATTCTGCCTCGA]




>consensus_4160#1
TCAANGCGGAATCAGCGAGCGTGATAGCAAGTGTGGAGGATTTGACGCTTGAACTGTGTA
TACACGTTGGACGCGGCCGCGGCGATCTCGTCTCGTGCATTTCCAGCCTACCGAACGCAA
TGCTTTGCGTTCAATCATCGTGTGCAATACNNAAGAATTAACATGTAACGGAAGGCCAAA
NACCTAANATAANTACGTAGAATAAAAGCAATAGATCCCATAACCATGAAACGATAATGT
AATCAAGATTCACGTTGCAATAACTGCGCAGCAAAGTGATGCAAGTGTAATAAGAATATC
ATAGAAATATCGATCGAGGTTGCTGTAGTAGATGGACTGGTAGATTTCGTTCTGTACGGT
ACCGAAGGTGAACGCTGCAAAAGAGATAGTTANACCTCGTGGCGATTCTGCCTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4160#0      ATGAAACGATAATGTAATCAAGATTCACGTTGCAATAACTGCGCAACAGTGATGAAAGTG 60
consensus_4160#1      ------------------------------------------------------------
                                                                                  

consensus_4160#0      TAATAAGAATATCATAGAAATATCGATCGAGGTTGCTGTAGTAGATGGACTGGTAGATTT 120
consensus_4160#1      ------------------------------------------------------------
                                                                                  

consensus_4160#0      CGTTCTGTACGGTACCGAAGAAACGCTGCAAAAGAGATAGTTCGTTTTCTTCCGCTTGTC 180
consensus_4160#1      ------------------------------------------------------------
                                                                                  

consensus_4160#0      CTCCTAACAGTGACGTTATGAGACAGAAGCATAGTTTCGTTCGTCTGTGTTCGCTAGAGT 240
consensus_4160#1      ---TCAANGCGGAATCAGCGAGCGTGATAGCAAGTGTGGAGGATTTGA---CGCTTGAAC 54
                           **    **      ***   **     *** * *    * **    **** **  

consensus_4160#0      GAGTGCACTTTTGCTTTCAAGATGTCGTGCCCAGGATGTCGGGGTTTCATGCGTTCGCCT 300
consensus_4160#1      ---TGTGTATACACGTTGGA-----CGCGGCCGCGGCGATCTCGTCTCGTGCATTT-CCA 105
                         **    *   * **  *     ** * **  *  *     ** ** *** **  ** 

consensus_4160#0      GTTCGCCTTATT--ATGCTTTCGCCCCGGGTATCTTGCCCAGCACCTTCGATAGGTCAAC 358
consensus_4160#1      GCCTACCGAACGCAATGCTTTGCGTTCAATCATCGTGTGCAATACNN---AAGAATTAAC 162
                      *    **  *    *******     *    *** **  **  **     *    * ***

consensus_4160#0      CCCGGTCAGGGCATTGATGGCTGGAGGCAGCTGTCCAACG-AGACGCGTCACATCGCCCG 417
consensus_4160#1      ATGTAACGGAAGGCCAAANACCTAANATAANTACGTAGAATAAAAGCAATAGATCCCATA 222
                            * *       *   *   *   *  *    *    * * **   * *** *   

consensus_4160#0      TCGTTTGATCGTTGCCACCGATCAGAACGATCTCTTCTGT--CTTCGCCA-ATGGCGCCG 474
consensus_4160#1      ACCATGAAACGATAATGT-AATCAAGATTCACGTTGCAATAACTGCGCAGCAAAGTGATG 281
                       *  *  * ** *       ****  *    *  * *  *  ** ***   *  * *  *

consensus_4160#0      CAACTTCAGCTGCGATCTTAGGCAGTGATTCGAGCACGATATTCATGATGGCCGCATCGC 534
consensus_4160#1      CAAGTGTAATAAGAATATCATAGAAATAT-CGATCGAGGTTGCTGTAGTAGATGGACTG- 339
                      *** *  *      ** * *   *   ** *** *  * *     *  * *  * *  * 

consensus_4160#0      CGTACATCTTGTATACGTTCGCCTTCATACGCATCCGTTCCGCTTCCGCTTTTCCGACCT 594
consensus_4160#1      -GTAGATTTCGT-TCTGTACGGTACCGAAGGTGAACGCTGCAAAAGAGATAGTTANACCT 397
                       *** ** * ** *  ** **    *  * *    ** * *      * *  *   ****

consensus_4160#0      GCTCGATGGCGTACGCTTCCGCCGATCCGATCTTCTTGATGCGCTCTGCCTCGGCCCGTG 654
consensus_4160#1      -CGTGGCGAT-TCTGCCTCGA--------------------------------------- 416
                       *  *  *   *  ** **                                         

consensus_4160#0      CGCTTTCGACCGTTTGCGTGCGTTTGCCCTCGGCAATCGGTAGCACGCGGTAGCTCTCCG 714
consensus_4160#1      ------------------------------------------------------------
                                                                                  

consensus_4160#0      CCTCCGCCGGCAGCTTCACCGTGGCGTTCAGTTCGCAATCCTTGCGATTGATTTC 769
consensus_4160#1      -------------------------------------------------------