These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [CCGGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAGAAGAAGTACAGTTCGGGACATTCTCACGGGTCAGGACATGTGCTTTTTTGCATATACAA] [+] EMBL BM653866 [CCGGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAGAAGAAGTACAGTTCGGGACATTCTCACGGGTCAGGACATGTGCTTTTTTGCATATACAA] consensusID : consensus_4163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CCGCCCACGCGTCCGAATGGACACTAAACCGACAGAATCGAAGACACTGCCCTCTGCCCAAGCGCGTCCCGTAAAGCTGGAGGAGGCATTCCTAATGACTAAGTTTGGGCTGTACAATCTGTGTCTGATCGCCATTTCCGGCATCATCTTGGCTGCCGTGCTGCTCGAAACGCTTGGCATCAGTTACGTGCTGCCAGTGGCCGAGTGCGACCTGCTGCTGACCACCAGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTCGATCCTGCTGCCGCTGATCGCCTGGTCCATCATTAACCAGGAGTGGGAGCTTGCCATCCCGCTGCTCGGCATCGTCTACCGGCCCTGGCGACTGGTTTCTGGTCGTTTGCGCACTGCCCAGCTTTGTGGCCGCCCTGGTACTGCTCGGACTGCCCGAGAGTCCGAAGTATC] [+] EMBL BM607556 [CCGCCCACGCGTCCGAATGGACACTAAACCGACAGAATCGAAGACACTGCCCTCTGCCCAAGCGCGTCCCGTAAAGCTGGAGGAGGCATTCCTAATGACTAAGTTTGGGCTGTACAATCTGTGTCTGATCGCCATTTCCGGCATCATCTTGGCTGCCGTGCTGCTCGAAACGCTTGGCATCAGTTACGTGCTGCCAGTGGCCGAGTGCGACCTGCTGCTGACCACCAGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATCTTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTCGATCCTGCTGCCGCTGATCGCCTGGTCCATCATTAACCAGGAGTGGGAGCTTGCCATCCCGCTGCTCGGCATCGTCTACCGGCCCTGGCGACTGGTTTCTGGTCGTTTGCGCACTGCCCAGCTTTGTGGCCGCCCTGGTACTGCTCGGACTGCCCGAGAGTCCGAAGTATC] consensusID : consensus_4163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGATACTGAACCGGATAGCCGAGCAGCAGGGCAAGGGTGTCGAGCGGACGACCGTGTGCAATGCGGTGTACGCCACCAGGTTCGACATCCAGGAGCTGGCGGGCCTGGGCGGCAATGGGACGGCACGGTCCGACCTGTGCCACCAGAAGCTGGACATTTCCGCCTACGAGCATTCGTTCGTGCTGGAAGCGATCTATGCGCTCGGGTTTGCCGTCATCGGGCTCATCATCAATGCGGTTGGCCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAAAGAAGCACAGTTTGGGACATTCTCACGGTTAGGACATGT] [+] EMBL BM577870 [CCGCCCACGCGTCCGCCCACGCGTCCGATACTGAACCGGATAGCCGAGCAGCAGGGCAAGGGTGTCGAGCGGACGACCGTGTGCAATGCGGTGTACGCCACCAGGTTCGACATCCAGGAGCTGGCGGGCCTGGGCGGCAATGGGACGGCACGGTCCGACCTGTGCCACCAGAAGCTGGACATTTCCGCCTACGAGCATTCGTTCGTGCTGGAAGCGATCTATGCGCTCGGGTTTGCCGTCATCGGGCTCATCATCAATGCGGTTGGCCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGTGCTGATCGTGTTCATCGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCACGTGCGGCTTCTGCATCAGTGTGGTGAACGCTTGCACCATTGACCTGTACCCAACGAATTTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTCGGACGGCTCGGTAGCATCGTTGGCTCGAATCTGGTCGGCTTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCCGGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACGGAACGTGTCGGAAGATCGGCTCAGTGTATCGTCACGGTGAAAGAAGCACAGTTTGGGACATTCTCACGGTTAGGACATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4163#0 CCGGGGAGAAGGGCGTGCTGAGTGCCATCTCGTTCGCGGGCATCATTTGCAGCTCGCATC 60 consensus_4163#2 ---------------------CCGCCCACGCGTCCGCCCACG-CGTCCGATACT-GAACC 37 consensus_4163#1 ---------------------CCGCCCACGCGTCCGAATGGACACTAAACCGACAGAATC 39 *** * *** ** * * * * consensus_4163#0 TTTGGGGCTTTCTGGCGGATACACGTGGCCGGCGGGCAATCATTTTGCCAACGCTGTTTC 120 consensus_4163#2 GGATAGCCGAGCAGCAGGGCAAGGGTGTCGAGCGGACGACCGTGTGCAATGCGGTGTACG 97 consensus_4163#1 GAAGACACTGCCCTCTGCCCAAGCGCGTCCCGTAAAGC----TGGAGGAGGCATTCCTAA 95 * * * * * * * * * * * consensus_4163#0 TTGCC---TTTGCCTCATCGGCTCTCTCTAGCCTTACCACCAACTTCTGGTTGATCACCG 177 consensus_4163#2 CCACCAGGTTCGACATCCAGGAGCTGGCGGGCCTGGGCGGCAA--TGGGACGGCACGGTC 155 consensus_4163#1 TGACTAAGTTTGGGCTGTACAATCTGT---GTCTGATCGCCAT-TTCCGGCATCAT-CTT 150 * ** * ** * ** * ** * * consensus_4163#0 TGATGCGGTTCTTGACGGG--ATTTTTCATTTCCGGCCCATCCGCCACTATCTACGCGTA 235 consensus_4163#2 CGAC-CTGTGCCACCAGAA--GCTGGACATTTCCG-----CCTACGAGCATTCGTTCGTG 207 consensus_4163#1 GGCTGCCGTGCTGCTCGAAACGCTTGGCATCAGTTACGT-GCTGCCAGTGGCCGAGTGCG 209 * * ** * * * *** * * * * consensus_4163#0 CCTGGGCGAATTTCATGGCAAGCGCAATTGCTCCCGTGCGATAATGGGGGCGT-CGTTTG 294 consensus_4163#2 C-TGGAAGCGATCTATG-CGCTCGGGTTTGCCGTCAT-------CGGGCTCAT-CATCAA 257 consensus_4163#1 ACCTGCTGCTGACCACCAGGGAGAAGGGCGTGCTGAGT-----GCCATCTCGTTCGCGGG 264 * * * * * * * consensus_4163#0 TGTTCGGTCTCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGT 354 consensus_4163#2 TGCGGTTGGCCGGCTGCCGATTCTGGTGTTTATTTTCGCGCTCTGCGGCACCTGCGGCGT 317 consensus_4163#1 CATCATTTG-CAGCTCGCATCTTTGGGGCTTTCTGGCG-GATACACGTGGCCGGCGG-GC 321 * *** * * *** * ** * ** * * ** ** **** * consensus_4163#0 GCTGATCGTGTTCAT-CGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCA 413 consensus_4163#2 GCTGATCGTGTTCAT-CGATCTGCCCCTGCTGGCCATCTGGTTCTATCTCATCCTGCTCA 376 consensus_4163#1 AATCATTTTGCCAACGCTGTTTCTTGCCTTTGCCTCATCGGCTCTCTCTAGCCTTAC-CA 380 * ** ** * * * * * ** * ** *** *** * * * ** consensus_4163#0 CGTGCGGCTTCTGCATCAGTGTGGTG-AACGCTTGCACCATTGACCTGTACCCAACGAAT 472 consensus_4163#2 CGTGCGGCTTCTGCATCAGTGTGGTG-AACGCTTGCACCATTGACCTGTACCCAACGAAT 435 consensus_4163#1 CCAACTTCTGGTTGATCACCGTGATGCGGTTCTTGACGGGATTTTTCATTTCCGGCCCAT 440 * * ** * **** *** ** **** * * ** * ** consensus_4163#0 TTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTC--GGACGGCTCGGTAGCATCGTTG 530 consensus_4163#2 TTACGAGCGATGGCAGTTTGCATCTCGCTGATGTTC--GGACGGCTCGGTAGCATCGTTG 493 consensus_4163#1 CCGC---CACTATCTACGCGTACCTGGGCGAATTTCATGGCAAGCGCAATTGC-TCCCGT 496 * * * * * * ** * ** *** ** ** * * ** ** consensus_4163#0 GCTCGAATCTGGTCGGC-TTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCC 589 consensus_4163#2 GCTCGAATCTGGTCGGC-TTTCTGCTCGACACGCACTGTGAGCTTACGTTCTGGATCTCC 552 consensus_4163#1 GCGATAATGGGGGCGTCGTTTGTGTTCGGTCTCGGCTCGATCCTGCTGCCGCTGATCGCC 556 ** *** ** ** * *** ** *** ** ** * **** ** consensus_4163#0 -GGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACG 648 consensus_4163#2 -GGTCTGCTGCTGGTCGGGTGCGGAGTGCTATCCTTCTTCATACCCAACATTTACAAACG 611 consensus_4163#1 TGGTCCATCATTAACCAGGAGTGG-GAGCTTGCCATCCCGCTGCTCGGCATCGTCTACCG 615 **** * * ** * ** * *** ** ** * * * *** * * ** consensus_4163#0 GAAC--GTGTCGGAAGATCGGC--TCAGTGTATCGTCACGGTGAGAAGAAGTACAGTT-- 702 consensus_4163#2 GAAC--GTGTCGGAAGATCGGC--TCAGTGTATCGTCACGGTGA-AAGAAGCACAGTT-- 664 consensus_4163#1 GCCCTGGCGACTGGTTTCTGGTCGTTTGCGCACTGCCCAGCTTTGTGGCCGCCCTGGTAC 675 * * * * * * ** * * * * * * * * * * * * * consensus_4163#0 ---CGGGACATTCTCACGGGTCAGGACATGTGCTTTTTTGCATATACAA 748 consensus_4163#2 ---TGGGACATTCTCACGG-TTAGGACATGT------------------ 691 consensus_4163#1 TGCTCGGACTGCCCGAGAGTCCGAAGTATC------------------- 705 **** * * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||