These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence [TTTTTTGTTTTATGTGGTTTTCTTTCAACGTTCCTATTCCACTGTTGAGCATGCCGTTGCAAGATGCCCAAAAGTGGCTGACAGTGGTGCTGACAGTTTCGATTGTGACCGTGGCTACTCTGCCGGCGACACCGACAACCACACCAGAGCCGGAACCAGATCCGAGCCCGCAGTACGCAGGCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACGTGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAATAGAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTTGCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAAAAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTC] [+] EMBL BX627830 [TTTTTTGTTTTATGTGGTTTTCTTTCAACGTTCCTATTCCACTGTTGAGCATGCCGTTGCAAGATGCCCAAAAGTGGCTGACAGTGGTGCTGACAGTTTCGATTGTGACCGTGGCTACTCTGCCGGCGACACCGACAACCACACCAGAGCCGGAACCAGATCCGAGCCCGCAGTACGCAGGCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACGTGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAATAGAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTTGCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAAAAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCT ] [+] EMBL BM590127 [ ccgGTGGCTACTCTGCCGGCGACACCGACAACCACACCAGAACCGGAACCAGATCCGAGCCCGCAGTACGCAGGCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACGTGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAATAGAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTTGCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTC] consensusID : consensus_4165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGCGGACGCGTGGGCGCGTGCCTGGTTTTGTTTGTTTGCGTTTCGCGTCTCTTACAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAACGTTGCCGAACTTCCGCCGTCACAGGCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTCGTATTGTTAACATTCATTCAGTAGCTACAGGAATCGTATTGAGGTTGTTAAGTATATAAATGGTGGACGCTGTACTAAATCCATTGGAAATGGAAATTAAAATATGTTAACGAGAAAATAATAATAATACAAGAAATATAGCCGTATTTAACCGTTCTTCC] [+] EMBL BM653951 [CCGCGGACGCGTGGGCGCGTGCCTGGTTTTGTTTGTTTGCGTTTCGCGTCTCTTACAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAACGTTGCCGAACTTCCGCCGTCACAGGCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTCGTATTGTTAACATTCATTCAGTAGCTACAGGAATCGTATTGAGGTTGTTAAGTATATAAATGGTGGACGCTGTACTAAATCCATTGGAAATGGAAATTAAAATATGTTAACGAGAAAATAATAATAATACAAGAAATATAGCCGTATTTAACCGTTCTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4165#0 TTTTTTGTTTTATGTGGTTTTCTTTCAACGTTCCTATTCCACTGTTGAGCATGCCGTTGC 60 consensus_4165#1 ------------------------------------------------------------ consensus_4165#0 AAGATGCCCAAAAGTGGCTGACAGTGGTGCTGACAGTTTCGATTGTGACCGTGGCTACTC 120 consensus_4165#1 ------------------------------------------------------------ consensus_4165#0 TGCCGGCGACACCGACAACCACACCAGAGCCGGAACCAGATCCGAGCCCGCAGTACGCAG 180 consensus_4165#1 ------------------------------------------------------------ consensus_4165#0 GCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACG 240 consensus_4165#1 ---------------------------------------------------------CCG 3 ** consensus_4165#0 TGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAAT-AGAG 299 consensus_4165#1 CGGACGCG-TGGGCGCGT----GCCTGGTTTTGTTTGTTTGCGTTTCGCGTCTCTTACAG 58 *** ** * * ** * * * * * ** * * * * ** consensus_4165#0 ATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACAT 359 consensus_4165#1 ATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACAT 118 ************************************************************ consensus_4165#0 GATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTT 419 consensus_4165#1 GATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAACGTT 178 ******************************************************* **** consensus_4165#0 GCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCG 479 consensus_4165#1 GCCGAACTTCCGCCGTCACAGGCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCG 238 ********************* ************************************** consensus_4165#0 ATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAAT 539 consensus_4165#1 ATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAAT 298 ************************************************************ consensus_4165#0 TTGCAAGAGCCTTAGAAAACTGAAAAAATTATTTTTTTATTTTTTTTAGCCTAGAACATT 599 consensus_4165#1 TTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATT 358 ************************ *********************************** consensus_4165#0 ATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGT 659 consensus_4165#1 ATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGT 418 ************************************************************ consensus_4165#0 TAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAA 719 consensus_4165#1 TAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAA 478 ************************************************************ consensus_4165#0 TAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTC--------- 770 consensus_4165#1 TAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTCGTATTGTTA 538 *************************************************** consensus_4165#0 ------------------------------------------------------------ consensus_4165#1 ACATTCATTCAGTAGCTACAGGAATCGTATTGAGGTTGTTAAGTATATAAATGGTGGACG 598 consensus_4165#0 ------------------------------------------------------------ consensus_4165#1 CTGTACTAAATCCATTGGAAATGGAAATTAAAATATGTTAACGAGAAAATAATAATAATA 658 consensus_4165#0 -------------------------------- consensus_4165#1 CAAGAAATATAGCCGTATTTAACCGTTCTTCC 690 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||