cluster # 4165

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4165 cluster # 4165 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4165#0 length = 770 sequences # 2

consensus_4165#1 length = 690 sequences # 1

consensusID : consensus_4165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 770
fasta sequence

                              [TTTTTTGTTTTATGTGGTTTTCTTTCAACGTTCCTATTCCACTGTTGAGCATGCCGTTGCAAGATGCCCAAAAGTGGCTGACAGTGGTGCTGACAGTTTCGATTGTGACCGTGGCTACTCTGCCGGCGACACCGACAACCACACCAGAGCCGGAACCAGATCCGAGCCCGCAGTACGCAGGCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACGTGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAATAGAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTTGCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAAAAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTC]

[+] EMBL BX627830             [TTTTTTGTTTTATGTGGTTTTCTTTCAACGTTCCTATTCCACTGTTGAGCATGCCGTTGCAAGATGCCCAAAAGTGGCTGACAGTGGTGCTGACAGTTTCGATTGTGACCGTGGCTACTCTGCCGGCGACACCGACAACCACACCAGAGCCGGAACCAGATCCGAGCCCGCAGTACGCAGGCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACGTGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAATAGAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTTGCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAAAAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCT                                                                                                                                   ]
[+] EMBL BM590127             [                                                                                                           ccgGTGGCTACTCTGCCGGCGACACCGACAACCACACCAGAACCGGAACCAGATCCGAGCCCGCAGTACGCAGGCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACGTGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAATAGAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTTGCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTC]




>consensus_4165#0
TTTTTTGTTTTATGTGGTTTTCTTTCAACGTTCCTATTCCACTGTTGAGCATGCCGTTGC
AAGATGCCCAAAAGTGGCTGACAGTGGTGCTGACAGTTTCGATTGTGACCGTGGCTACTC
TGCCGGCGACACCGACAACCACACCAGAGCCGGAACCAGATCCGAGCCCGCAGTACGCAG
GCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACG
TGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAATAGAGA
TTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATG
ATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTTG
CCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGA
TCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATT
TGCAAGAGCCTTAGAAAACTGAAAAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTA
TTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTT
AAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAAT
AAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTC

consensusID : consensus_4165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [CCGCGGACGCGTGGGCGCGTGCCTGGTTTTGTTTGTTTGCGTTTCGCGTCTCTTACAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAACGTTGCCGAACTTCCGCCGTCACAGGCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTCGTATTGTTAACATTCATTCAGTAGCTACAGGAATCGTATTGAGGTTGTTAAGTATATAAATGGTGGACGCTGTACTAAATCCATTGGAAATGGAAATTAAAATATGTTAACGAGAAAATAATAATAATACAAGAAATATAGCCGTATTTAACCGTTCTTCC]

[+] EMBL BM653951             [CCGCGGACGCGTGGGCGCGTGCCTGGTTTTGTTTGTTTGCGTTTCGCGTCTCTTACAGATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAACGTTGCCGAACTTCCGCCGTCACAGGCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTCGTATTGTTAACATTCATTCAGTAGCTACAGGAATCGTATTGAGGTTGTTAAGTATATAAATGGTGGACGCTGTACTAAATCCATTGGAAATGGAAATTAAAATATGTTAACGAGAAAATAATAATAATACAAGAAATATAGCCGTATTTAACCGTTCTTCC]




>consensus_4165#1
CCGCGGACGCGTGGGCGCGTGCCTGGTTTTGTTTGTTTGCGTTTCGCGTCTCTTACAGAT
TTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACATGA
TCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAACGTTGC
CGAACTTCCGCCGTCACAGGCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCGAT
CGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAATTT
GCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATTAT
TGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGTTA
AAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAATA
AATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTCGTATTGTTAAC
ATTCATTCAGTAGCTACAGGAATCGTATTGAGGTTGTTAAGTATATAAATGGTGGACGCT
GTACTAAATCCATTGGAAATGGAAATTAAAATATGTTAACGAGAAAATAATAATAATACA
AGAAATATAGCCGTATTTAACCGTTCTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4165#0      TTTTTTGTTTTATGTGGTTTTCTTTCAACGTTCCTATTCCACTGTTGAGCATGCCGTTGC 60
consensus_4165#1      ------------------------------------------------------------
                                                                                  

consensus_4165#0      AAGATGCCCAAAAGTGGCTGACAGTGGTGCTGACAGTTTCGATTGTGACCGTGGCTACTC 120
consensus_4165#1      ------------------------------------------------------------
                                                                                  

consensus_4165#0      TGCCGGCGACACCGACAACCACACCAGAGCCGGAACCAGATCCGAGCCCGCAGTACGCAG 180
consensus_4165#1      ------------------------------------------------------------
                                                                                  

consensus_4165#0      GCACCGAACGAACGGTTGGTGCGGTGCGTAAATGCTCGGAAACGTCAACGCTGCTGTACG 240
consensus_4165#1      ---------------------------------------------------------CCG 3
                                                                                **

consensus_4165#0      TGGAGACGGTAGTCGTGCTGAAGGACGACCTGACGAGCCTGATCAATGGAACAAT-AGAG 299
consensus_4165#1      CGGACGCG-TGGGCGCGT----GCCTGGTTTTGTTTGTTTGCGTTTCGCGTCTCTTACAG 58
                       ***  ** * * ** *     *   *   *     *  **      *   *  * * **

consensus_4165#0      ATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACAT 359
consensus_4165#1      ATTTCGATTGGCAAACCCGTCACGATCGAGTGTGTGCGTATCGTGGCCAAAACGGAACAT 118
                      ************************************************************

consensus_4165#0      GATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAGCGTT 419
consensus_4165#1      GATCGGTCGGCACTGCAGGGGTACCGGTTCGTGAGCCCGACGGTAATCGAAGTGAACGTT 178
                      ******************************************************* ****

consensus_4165#0      GCCGAACTTCCGCCGTCACAGTCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCG 479
consensus_4165#1      GCCGAACTTCCGCCGTCACAGGCAACGGCGCTCGAGTACGCGGTGTACGTTTACGGGTCG 238
                      ********************* **************************************

consensus_4165#0      ATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAAT 539
consensus_4165#1      ATCGGTCGGAAAAAGAAAACATCTGGTGTAGCCCACTGAGCATTTGTAGCGATTTCAAAT 298
                      ************************************************************

consensus_4165#0      TTGCAAGAGCCTTAGAAAACTGAAAAAATTATTTTTTTATTTTTTTTAGCCTAGAACATT 599
consensus_4165#1      TTGCAAGAGCCTTAGAAAACTGAACAAATTATTTTTTTATTTTTTTTAGCCTAGAACATT 358
                      ************************ ***********************************

consensus_4165#0      ATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGT 659
consensus_4165#1      ATTGTTTTAATTTGTTGCAATTAAAATTATATTTAACCCTAGACACACGCTGCATTGCGT 418
                      ************************************************************

consensus_4165#0      TAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAA 719
consensus_4165#1      TAAAGGATACGTATAATTAAATGCATTTTGTCGTGTCAGTTTACTGTGGCCTTCGTAAAA 478
                      ************************************************************

consensus_4165#0      TAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTC--------- 770
consensus_4165#1      TAAATAAAAATAACTATGCTTGTTTATTGACGCATGATGGTTGATGTTCTCGTATTGTTA 538
                      ***************************************************         

consensus_4165#0      ------------------------------------------------------------
consensus_4165#1      ACATTCATTCAGTAGCTACAGGAATCGTATTGAGGTTGTTAAGTATATAAATGGTGGACG 598
                                                                                  

consensus_4165#0      ------------------------------------------------------------
consensus_4165#1      CTGTACTAAATCCATTGGAAATGGAAATTAAAATATGTTAACGAGAAAATAATAATAATA 658
                                                                                  

consensus_4165#0      --------------------------------
consensus_4165#1      CAAGAAATATAGCCGTATTTAACCGTTCTTCC 690