These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence [CCGCAAAAAGCACCAGTCCATGGCGACACCACTGACCGACGGGTATGCCGCGCATCTCAGCTCGCTGATGACGGTGGGCGGCTCCCGGCCGGCGCAGGGCAACGCCCGCATGGTTATACCGCGCAGCTGCTTCAACCTGCCCGGCCAAAATCAATCCATTCGCAGGCGAAGGTTCGTGCCGGGCTAGGCTGGTGGGCGCGGGCGGAGCCCAGCGCGAACGGACACCGGAACCGGCACATGGAACCAATCGAATCAACACTAACCCCAAGGCAGCCAACAATATCCTAAACAGGGCCCCAGCAGCAACCCTTGCAATCCATGCCAAAAAGAAGAAACTGGAGGAAGAGGAGGAGGAATAAGAAGAAAAAAAGGGGGGGGGAGGTAATACCTAAAGCCAGTAACCAAGCGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGAAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGGTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACTTAACTATAGTGAGAATGATATCATCAGTCGAACATGGTTCGAATAGAAAAGGAAACACACACACACACACCAACACGATACTCAAGCGATCACCAACTATCACTGGCTAGTGACAGGCGACTCTAAGGAAGCTTGGCAATAAGAAGCGAACCCTACAGCAATAATCCTGCGCCCCTGCATTATCTCTCTCTCTCTCTCGCTTTTCATTCCATACATATTCCTATACACTCCCATCCACCCCACCCCTCTCCTATCTCCTGTCTTTGTCTTA] [+] EMBL BM647058 [CCGCAAAAAGCACCAGTCCATGGCGACACCACTGACCGACGGGTATGCCGCGCATCTCAGCTCGCTGATGACGGTGGGCGGCTCCCGGCCGGCGCAGGGCAACGCCCGCATGGTTATACCGCGCAGCTGCTTCAACCTGCCCGGCCAAAATCAATCCATTCGCAGGCGAAGGTTCGTGCCGGGCTAGGCTGGTGGGCGCGGGCGGAGCCCAGCGCGAACGGACACCGGAACCGGCACATGGAACCAATCGAATCAACACTAACCCCAAGGCAGCCAACAATATCCTAAACAGGGCCCCAGCAGCAACCCTTGCAATCCATGCCAAAAAGAAGAAACTGGAGGAAGAGGAGGAGGAATAAGAAGAAAAAAAGGGGGGGGGAGGTAATACCTAAAGCCAGTAACCAAGCGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGAAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGGTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCT ] [+] EMBL BX627864 [ GGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGGAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAACACACGTGCACCAGTTTTTTTGTTCGTTTCTCTCTCGCTCTCTCGGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACTTAACTATAGTGAGAATGATATCATCAGTCGAACATGGTTCGAATAGAAAAGGAAACACACACACACACACCAACACGATACTCAAGCGATCACCAACTATCACTGGCTAGTGACAGGCGACTCTAAGGAAGCTTGGCAATAAGAAGCGAACCCTACAGCAATAATCCTGCGCCCCTGCATTATCTCTCTCTCTCTCTCGCTTTTCATTCCATACATATTCCTATACACTCCCATCCACCCCACCCCTCTCCTATCTCCTGTCTTTGTCTTA] consensusID : consensus_4176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [CCGCTAAAGCCAGTAACCAAACGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGCAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGTTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATATATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACT] [+] EMBL BM653101 [CCGCTAAAGCCAGTAACCAAACGGAGAGCGACAGCGTATAGGAAGAGAACGTAAAAGAAGAGGAGAGCAGAACAAGGGGGAATAGTAGTAAACATATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAATAAGTGGAGTGGAGTGGAAGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCGTAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTTTTTTTGTTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTCATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCTCTCCTCAGCAATCTATGATATATATATATATATATAATATATATTAGCCAATGGCAAAGGTGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAGGAACTGTTATGTGTTATGTAGCGAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4176#0 CCGCAAAAAGCACCAGTCCATGGCGACACCACTGACCGACGGGTATGCCGCGCATCTCAG 60 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CTCGCTGATGACGGTGGGCGGCTCCCGGCCGGCGCAGGGCAACGCCCGCATGGTTATACC 120 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GCGCAGCTGCTTCAACCTGCCCGGCCAAAATCAATCCATTCGCAGGCGAAGGTTCGTGCC 180 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GGGCTAGGCTGGTGGGCGCGGGCGGAGCCCAGCGCGAACGGACACCGGAACCGGCACATG 240 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GAACCAATCGAATCAACACTAACCCCAAGGCAGCCAACAATATCCTAAACAGGGCCCCAG 300 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CAGCAACCCTTGCAATCCATGCCAAAAAGAAGAAACTGGAGGAAGAGGAGGAGGAATAAG 360 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 AAGAAAAAAAGGGGGGGGGAGGTAATACCTAAAGCCAGTAACCAAGCGGAGAGCGACAGC 420 consensus_4176#1 -------------------------CCGCTAAAGCCAGTAACCAAACGGAGAGCGACAGC 35 ***************** ************** consensus_4176#0 GTATAGGAAGAGAACGTAAAAGAAGAGGAGAGAAGAACAAGGGGGAATAGTAGTAAACAT 480 consensus_4176#1 GTATAGGAAGAGAACGTAAAAGAAGAGGAGAGCAGAACAAGGGGGAATAGTAGTAAACAT 95 ******************************** *************************** consensus_4176#0 ATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAA 540 consensus_4176#1 ATATAAAAGCACTATTTAAGAGTTGCATCCTGTATAGTAGTTGTTCGGCAGGAAGGGCAA 155 ************************************************************ consensus_4176#0 TAAGTGGAGTGGAGTGGAAGGCACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCG 600 consensus_4176#1 TAAGTGGAGTGGAGTGGAAG-CACGAGAAGCATGAGCAAAAGATGAAGCAGCGAACCCCG 214 ******************** *************************************** consensus_4176#0 TAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTT 660 consensus_4176#1 TAAACCAAACGATATTCCTTAGCGTGTAAGCAGCGTTATATAAGCACACGTGCACCAGTT 274 ************************************************************ consensus_4176#0 TTTTTGGTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTC 720 consensus_4176#1 TTTTTGTTCGTTTCTCTCTCGCTCTCTCTGTCTCCCTCTCTGTCTCTTCCTCGATCTCTC 334 ****** ***************************************************** consensus_4176#0 ATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCCCT 780 consensus_4176#1 ATAGCTTTCGGACGTATCAGTTAAGAATCGGTACAGAGATGTGGGAGTCCCCCCCCCC-T 393 ********************************************************** * consensus_4176#0 CTCCTCAGCAATCTATGATATATATA----------ATATATATTAGCCAATGGCAAAGG 830 consensus_4176#1 CTCCTCAGCAATCTATGATATATATATATATATATAATATATATTAGCCAATGGCAAAGG 453 ************************** ************************ consensus_4176#0 TGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAG 890 consensus_4176#1 TGTGGAAGACCACAGTGCGCAAAAAGGCATTTGCGACCAATACGAAAGATCTGTCAACAG 513 ************************************************************ consensus_4176#0 GAACTGTTATGTGTTATGTAGCGAAACTTAACTATAGTGAGAATGATATCATCAGTCGAA 950 consensus_4176#1 GAACTGTTATGTGTTATGTAGCGAAACT-------------------------------- 541 **************************** consensus_4176#0 CATGGTTCGAATAGAAAAGGAAACACACACACACACACCAACACGATACTCAAGCGATCA 1010 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CCAACTATCACTGGCTAGTGACAGGCGACTCTAAGGAAGCTTGGCAATAAGAAGCGAACC 1070 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CTACAGCAATAATCCTGCGCCCCTGCATTATCTCTCTCTCTCTCTCGCTTTTCATTCCAT 1130 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 ACATATTCCTATACACTCCCATCCACCCCACCCCTCTCCTATCTCCTGTCTTTGTCTTA 1189 consensus_4176#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||