These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [CAGAATCGCCCCGAGGTNCTCTTCTCAGCTCAGCAATCAAATGAAGTTCTTCATTGGCAATCATGGCTGTGGCGTTCGTCGCTGCCTCGGAGGCGTCCTACCTGCCATACGATGATGTCCTGTCCTACCAGCACAGCTACGGCTATGGACTTCCGGTGTCTGAAGGTGGTCTATGGCTCGTCGTACGGTCTCCCAGCAGCGTTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCCTATCCGGCCGTGAAGAAAGTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAGGTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAACAGCGGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAGCAGCGGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTGGTCGCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGACTGTGGAACTATGGAGGATACGGTCTTGGGGATACAACAAAGTATCTGTCGACTGCTCCCCGTTTGCCAACTATGTTCTCTAAATGTCATTCAATCCCGTACCATGAGTGTACATACAACACCACAACGACACGCGCACACCAGCATACGTGAAGTCCATTCTCAAGGCTTTGCCTGCTATACCGCGCGCCGGATGTCA] [+] EMBL AL931744 [CAGAATCGCCCCGAGGTNCTCTTCTCAGCTCAGCAATCAAATGAAGTTCTTCATTGGCAATCATGGCTGTGGCGTTCGTCGCTGCCTCGGAGGCGTCCTACCTGCCATACGATGATGTCCTGTCCTACCAGCACAGCTACGGCTATGGACTTCCGGTGTCTGAAGGTGGTCTATGGCTCGTCGTACGGTCTCCCAGCAGCGTTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCCTATCCGGCCGTGAAGAAAGTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAGGTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAACAGCGGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAGCAGCGGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTGGTCGCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGACTGTGGAACTATGGAGGATACGGTCTTGGGGATACAACAAAGTATCTGTCGACTGCTCCCCGTTTGCCAACTATGTTCTCTAAATGTCATTCAATCCCGTACCATGAGTGTACATACAACACCACAACGACACGCGCACACCAGCATACGTGAAGTCCATTCTCAAGGCTTTGCCTGCTATACCGCGCGCCGGATGTCA] consensusID : consensus_4179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [ATCAAAATGAAGTTCTTCATTGCAATCATGGCAGTGGCGTTCGTCGCTGCCTCGGAGGCGTCCTACCTGCCATACGATGATGTCCTGTCCTACCAGCACGGCTACGGCTATGGACTTCCGGTGTCGAAGGTGGTCTATGGCTCGTCGTACGGTCTCCCAGCAGCGGTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCTTATCCGGCCGTGAAGAAATTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAGGTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTTCTGAGCAGCGGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTGGTCGCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGACTGTGGAACTATGGAGGATACGGTCTGGGATACAACAAGTATCTGCCGTCTACCAAGTATGTTCTCTAAGCTTTCCGACACCGACGTGATCAACCTTCACAATCGAATTACCGGAATCTCTAATACCTGTTCTGGGGCTACGTTTATTTCGCCATGAAAATAAAATGCTTTTACGTGTTA] [+] EMBL BX627826 [ATCAAAATGAAGTTCTTCATTGCAATCATGGCAGTGGCGTTCGTCGCTGCCTCGGAGGCGTCCTACCTGCCATACGATGATGTCCTGTCCTACCAGCACGGCTACGGCTATGGACTTCCGGTGTCGAAGGTGGTCTATGGCTCGTCGTACGGTCTCCCAGCAGCGGTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCTTATCCGGCCGTGAAGAAATTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAGGTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTTCTGAGCAGCGGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTGGTCGCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGACTGTGGAACTATGGAGGATACGGTCTGGGATACAACAAGTATCTGCCGTCTACCAAGTATGTTCTCTAAGCTTTCCGACACCGACGTGATCAACCTTCACAATCGAATTACCGGAATCTCTAATACCTGTTCTGGGGCTACGTTTATTTCGCCATGAAAATAAAATGCTTTTACGTGTTA] consensusID : consensus_4179#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [CCTACCTGCCATACGATGATGTCCTGTCCTACCAGCACGGCTACGGCTATGGACTTCCGGTGTCGAAGGTGGTCTATGGCTCGTCGTACGGTCTCCCAGCAGCGGTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCCTATCCGGCCGTGAAGAAAGTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAGGTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAGCAGCGGATACGGTCTGGGATACAACAAGCTGGTTGCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGACTGTGGAACTATGGAGGATATGGTCTGGGATACAACAAGTATCTGTCGACTGCTCCCGTTGCCAAATACGTGTTGTAAATGTAGATAATATTGTTTTAATAAACCGGCTCCGATTCATGACGTGTGA] [+] EMBL BX627598 [CCTACCTGCCATACGATGATGTCCTGTCCTACCAGCACGGCTACGGCTATGGACTTCCGGTGTCGAAGGTGGTCTATGGCTCGTCGTACGGTCTCCCAGCAGCGGTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCCTATCCGGCCGTGAAGAAAGTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAGGTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAGCAGCGGATACGGTCTGGGATACAACAAGCTGGTTGCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGACTGTGGAACTATGGAGGATATGGTCTGGGATACAACAAGTATCTGTCGACTGCTCCCGTTGCCAAATACGTGTTGTAAATGTAGATAATATTGTTTTAATAAACCGGCTCCGATTCATGACGTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4179#0 CAGAATCGCCCCGAGGTNCTCTTCTCAGCTCAGCAATCAAATGAAGTTCTTCATTGGCAA 60 consensus_4179#2 ------------------------------------------------------------ consensus_4179#1 ----------------------------------ATCAAAATGAAGTTCTTCATTG-CAA 25 consensus_4179#0 TCATGGCTGTGGCGTTCGTCGCTGCCTCGGAGGCGTCCTACCTGCCATACGATGATGTCC 120 consensus_4179#2 ------------------------------------CCTACCTGCCATACGATGATGTCC 24 consensus_4179#1 TCATGGCAGTGGCGTTCGTCGCTGCCTCGGAGGCGTCCTACCTGCCATACGATGATGTCC 85 ************************ consensus_4179#0 TGTCCTACCAGCACAGCTACGGCTATGGACTTCCGGTGTCTGAAGGTGGTCTATGGCTCG 180 consensus_4179#2 TGTCCTACCAGCACGGCTACGGCTATGGACTTCCGGTGTC-GAAGGTGGTCTATGGCTCG 83 consensus_4179#1 TGTCCTACCAGCACGGCTACGGCTATGGACTTCCGGTGTC-GAAGGTGGTCTATGGCTCG 144 ************** ************************* ******************* consensus_4179#0 TCGTACGGTCTCCCAGCAGCGTTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCC 240 consensus_4179#2 TCGTACGGTCTCCCAGCAGCGGTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCC 143 consensus_4179#1 TCGTACGGTCTCCCAGCAGCGGTGGACAAGTACTCCTACCCATCATCGTTGTACGGTTCT 204 ********************* ************************************* consensus_4179#0 TATCCGGCCGTGAAGAAAGTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAG 300 consensus_4179#2 TATCCGGCCGTGAAGAAAGTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAG 203 consensus_4179#1 TATCCGGCCGTGAAGAAATTGGTCGAATACCCGTCGGTTGCTCCAGTGCTGGCCACCAAG 264 ****************** ***************************************** consensus_4179#0 GTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAACAGC 360 consensus_4179#2 GTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTGCTGAGCAGC 263 consensus_4179#1 GTCGTTGATAACAGCTACGATCTGGGATACAACAAGCTGGTCGCTCCAGTTCTGAGCAGC 324 ************************************************** **** **** consensus_4179#0 GGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTG 420 consensus_4179#2 GGATACGGTCTGGGATACAACAAGCTGGTT------------------------------ 293 consensus_4179#1 GGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATACGGTCTGGGATACAACAAGCTG 384 ***************************** consensus_4179#0 GTCGCTCCAGTGCTGAGCAGCGGATACGGTCTGGGATACAACAAGCTGGTCAGCGGATAC 480 consensus_4179#2 ------------------------------------------------------------ consensus_4179#1 GTC--------------------------------------------------------- 387 consensus_4179#0 GGTCTGGGATACAACAAGCTGGTCGCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGA 540 consensus_4179#2 ------------------------GCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGA 329 consensus_4179#1 ------------------------GCTCCCGTCGTCGCCACCAAAGTCGTCGATAATGGA 423 ************************************ consensus_4179#0 CTGTGGAACTATGGAGGATACGGTCTTGGGGATACAACAAAGTATCTGTCGACTGCTCCC 600 consensus_4179#2 CTGTGGAACTATGGAGGATATGGTCT--GGGATACAACAA-GTATCTGTCGACTGCTCCC 386 consensus_4179#1 CTGTGGAACTATGGAGGATACGGTCT--GGGATACAACAA-GTATCTGCCGTCTA--CCA 478 ******************** ***** ************ ******* ** ** ** consensus_4179#0 CGTTTGCCAACTATGTTCTCTAAATGTCATTCAATCCCGTACCATGAGTGTACATACAAC 660 consensus_4179#2 --GTTGCCAAATACGTGTTGTAAATGT-AGATAATATTGTTTTAATAAACCGGCTCCGAT 443 consensus_4179#1 AGTATGTTCTCTAAGCTTTCCGACACCGACGTGATCAACCTTCACAATCGAATTACCGGA 538 ** ** * * * * ** * * * consensus_4179#0 ACCACAACGACACGCGCACACCAGCATACGTGAAGTCCATTCTCAAGGCTTTGCCTGCTA 720 consensus_4179#2 TC----ATGACGTGTGA------------------------------------------- 456 consensus_4179#1 ATCTC--TAATACCTGTTCTGGGGC-TACGTTTATTTCGCCATGAAAA--TAAAATGCTT 593 * * consensus_4179#0 TACCGCGCGCCGGATGTCA 739 consensus_4179#2 ------------------- consensus_4179#1 TTACGTGTTA--------- 603 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||