These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [ACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGAGTGAGTTTTCTGCGTGACTTGGTGCAAGATATGAGCTAGTTCTAGGNTACTGTGGAAGTTTTTGTAATGTTGAGCCTAAAGTTCTTAATAATTGGATTAACAATATAATATCTGTGCCAGTGAACTTAAACATGATCAAAATAGACCCGAAAAGTGCACACATAACATTAAGTGCTTCTAGCTAAACATTTAGTTTCTATTCTTGAGTCCTTTACATCATCCAGATTCCCAAAAGAACCCAAGTTCTAACGCCTATCTGTTACTTCAATTTATTCCAAACGATAGTTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATG] [+] EMBL BX628105 [ACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGAGTGAGTTTTCTGCGTGACTTGGTGCAAGATATGAGCTAGTTCTAGGNTACTGTGGAAGTTTTTGTAATGTTGAGCCTAAAGTTCTTAATAATTGGATTAACAATATAATATCTGTGCCAGTGAACTTAAACATGATCAAAATAGACCCGAAAAGTGCACACATAACATTAAGTGCTTCTAGCTAAACATTTAGTTTCTATTCTTGAGTCCTTTACATCATCCAGATTCCCAAAAGAACCCAAGTTCTAACGCCTATCTGTTACTTCAATTTATTCCAAACGATAGTTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATG] consensusID : consensus_4186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence [GGTACAGACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTACCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCCGCACACCGGCGACCACAAGAAGCAGTGGGAA] [+] EMBL BX628127 [GGTACAGACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTACCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCC ] [+] EMBL BX626923 [ GTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTGGTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCAGTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGAGCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCACTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGATAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAGCGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAACTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTACCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCCGCACACCGGCGACCACAAGAAGCAGTGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4186#0 ACCTAGCAGTTCCGGAGCAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAA 60 consensus_4186#1 ------------------------------------------------------------ consensus_4186#0 CTCGTTGAGCCAGTGGTATAATACAATGTTGCGAGTGAGTTTTCTGCGTGACTTGGTGCA 120 consensus_4186#1 ------------------------------------------------------------ consensus_4186#0 AGATATGAGCTAGTTCTAGGNTACTGTGGAAGTTTTTGTAATGTTGAGCCTAAAGTTCTT 180 consensus_4186#1 ------------------------------------------------------------ consensus_4186#0 AATAATTGGATTAACAATATAATATCTGTGCCAGTGAACTTAAACATGATCAAAATAGAC 240 consensus_4186#1 ------------------------------------------------------------ consensus_4186#0 CCGAAAAGTGCACACATAACATTAAGTGCTTCTAGCTAAACATTTAGTTTCTATTCTTGA 300 consensus_4186#1 ----------------------------------GGTACAGACCTAG---CAGTTCCGGA 23 * ** * * *** * *** ** consensus_4186#0 GTCCTTTACATCATCCAGATTCCCAAAAGAACCCAAGTTCTAACGCCTATCTGTTACTTC 360 consensus_4186#1 G-CAGCAGTAGCAGTTACAGCAGTTCCTCAGTGCAGAAAGTGAAACTCGTTGAGCCAGTG 82 * * * ** * * * ** * * * * * consensus_4186#0 AATTTATTCCAAACGATAGTTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCA 420 consensus_4186#1 GTATAATACAATGTTGCGATTTGTGTCCGCTATTGCCATCCTGGCAGCGACGGCTGTCCA 142 * ** * * ***************************************** consensus_4186#0 GTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGA 480 consensus_4186#1 GTCGGCTCCAGTAGAACCAGCCCAGTACGCTTTCGTGACGAAGCACCATCACGTCCCGGA 202 ************************************************************ consensus_4186#0 GCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCA 540 consensus_4186#1 GCAGCATCATCACGTGCTGGAGCATGTGCATCATGCGCCAGAACCGCAGCTGGCCGTGCA 262 ************************************************************ consensus_4186#0 CTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGA 600 consensus_4186#1 CTATCCGGTTGAGCTGCTGCAGGATCATCACCACGAGCCGCAGCTCGTGCTGAGCAACGA 322 ************************************************************ consensus_4186#0 TAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAG 660 consensus_4186#1 TAAGTACATCGGTGAGGCACACGAGTACCATCATCATGAAGCTCCGGCCACCAGCTACAG 382 ************************************************************ consensus_4186#0 CGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAA 720 consensus_4186#1 CGAGGGCAACGACTATAGCTCCCTGTACGGTGGCAAGCACGGTTCTCATCTGTATGATAA 442 ************************************************************ consensus_4186#0 CTACCAGTATG------------------------------------------------- 731 consensus_4186#1 CTACCAGTATGGCCAGTACGAATCGGGTTACGCCAAGAAGTACGACGAGTACAACGCGTA 502 *********** consensus_4186#0 ------------------------------------------------------------ consensus_4186#1 CCCGAAGTACAGCTTCGAGTACGGTGTCGATGATCCGCACACCGGCGACCACAAGAAGCA 562 consensus_4186#0 ------- consensus_4186#1 GTGGGAA 569 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||