These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1154 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCTCGCTGATGGTTTGGTTTGAGACGCGCAAGTTTGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGACCAGTGTAAAACTGGGTCGTTAAAAAGTGTCTAACAAAAGCAGGGAAAATATTAAGCAGCACCGTTTTATTGCGTGCAATCGAGAATAAACAATTGCAGCTTTGCTTCTCGAGTTCCCTTTGGTGGAAAGCGTTGCGGAAAATGAGTGGAACTGTTCGAGTATCGTTCTACTGCCAGAAGTTGCAGCTGTGGTGCAACGAGCCGATCCTGAGTCCGGTCAATCGTTAATTGTGAATCGTCTCGACAGGGAGACCTAGTGCAAATAACGGACACTTTTGTGAGCTGGGAATTGATTGGCATATAGAAACTGTTGCCCAAAATCAACCATTTGAACCATTCCCAAGACTTTCAGTGGAACAAAGGTACTGTGGTTGAGGCTAGTAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCCTGCGGCAACTACTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTCGTCGGACGAGAGTGGACCGGCACGGAGCGAATCGCTGACGGACGAGGAGCTTGCCCAGGCAACTGTTTCCGCCTCCGATTGTGACACCGATCATGACCTTCATCAGACACCTCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCATCAAGTACAACATCAGCAACCCTCCCCGAACCGATCTCACCTGCAGCAGCAGCACATGCAACAGCAGCAGCAGCAGCAGCAGCATGGACAGCATCAGCACGCGCACCAGCACCACCCGTCGGACGGTCGGGACCGGTCGAATCCATGGGCGCAGCAGCTGCAAAACCACATCAGCACCGGCACCAGCGCAAACCGTGACGGGGCCGGACAATTCGCCCGGCCCGTCGCCCGGCCGATCGAGCGGCAACAATTGGCCCTTCCCCAACTACCAGCGGCTGTACAACGAAAACTCGTACAGCATTGCAATTGCGGCGGCGGCAGCGGCGGCCAGCAGTCAGGCGCAGCAACACAACGCGACCCAGCAGCAGCTGCAGCAGCAGCAAAACCAACAAGCTCAG] [+] EMBL BM578941 [CCGCCCACGCGTCCGCCCACGCGTCCGGCTCGCTGATGGTTTGGTTTGAGACGCGCAAGTTTGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGACCAGTGTAAAACTGGGTCGTTAAAAAGTGTCTAACAAAAGCAGGGAAAATATTAAGCAGCACCGTTTTATTGCGTGCAATCGAGAATAAACAATTGCAGCTTTGCTTCTCGAGTTCCCTTTGGTGGAAAGCGTTGCGGAAAATGAGTGGAACTGTTCGAGTATCGTTCTACTGCCAGAAGTTGCAGCTGTGGTGCAACGAGCCGATCCTGAGTCCGGTCAATCGTTAATTGTGAATCGTCTCGACAGGGAGACCTAGTGCAAATAACGGACACTTTTGTGAGCTGGGAATTGATTGGCATATAGAAACTGTTGCCCAAAATCAACCATTTGAACCATTCCCAAGACTTTCAGTGGAACAAAGGTACTGTGGTTGAGGCTAGTAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCCTGCGGCAACTACTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTCGTCGGACGAGAGTGGACCGGCACGGAGCGAATCGCTGACGGACGAGGAGCTTGCCCAGGCAACTGTTTCCGCCTCCGATTGTGACA ] [+] EMBL BM636491 [ ccgGGCTAATAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCTTGCGGAAATTACTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTCGTCGGACGAGAGTGGACCGGCACGGAGCGAATCGCTGACGGACGAGGAGCTTGCCCAGGCAACTGTTTCCGCCTCCGATTGTGACACCGATCATGACCTTCATCAGACACCTCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCATCAAGTACAACATCAGCAACCCTCCCCGAACCGATCTCACCTGCAGCAGCAGCACATGCAACAGCAGCAGCAGCAGCAGCAGCATGGACAGCATCAGCACGCGCACCAGCACCACCCGTCGGACGGTCGGGACCGGTCGAATCCATGGGCGCAGCAGCTGCAAAACCACATCAGCACCGGCACCAGCGCAAACCGTGACGGGGCCGGACAATTCGCCCGGCCCGTCGCCCGGCCGATCGAGCGGCAACAATTGGCCCTTCCCCAACTACCAGCGGCTGTACAACGAAAACTCGTACAGCATTGCAATTGCGGCGGCGGCAGCGGCGGCCAGCAGTCAGGCGCAGCAACACAACGCGACCCAGCAGCAGCTGCAGCAGCAGCAAAACCAACAAGCTCAG] consensusID : consensus_4190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CCGCGGAAATATGATCGGGTTTAGTTAATCGAGTGGTTATGATCTATTTGTGGAGTGAACCGTTTTAGGCTTAGCAAAGAGAACGAGGGATCAAAAAAGAGAAGCTTTTCTATTTTGTTTGTTTTTGATGCAAATTGAAACGAAAATTCTTGGGGGTTTTGTGTATTTTTTTCAATTAGCTAACTTAAGTTGGAGTTCATTTTTTTGGTTTCAGTTATTATTTAGAATAGGGGATACATCAGGCACAGACTATCGTCTGTTGTGTTTTTTTTCGTTTTTTCTGGCTTTTCTCCATATACATTTGCAGCATTTGAGTATAGCGAGTCCGTGCGTATCAAATTGTTCCGGAAAGTCCGAGAAATAAACAAATAATTATGAAAAACCTTCCACAAAAACAAAATATTTATTGTGCACTATTATAATATCTCCAATAGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGGCCAGTGTGACACTGGGTCGTTAACAAGTGTGTAACCA] [+] EMBL BM623759 [CCGCGGAAATATGATCGGGTTTAGTTAATCGAGTGGTTATGATCTATTTGTGGAGTGAACCGTTTTAGGCTTAGCAAAGAGAACGAGGGATCAAAAAAGAGAAGCTTTTCTATTTTGTTTGTTTTTGATGCAAATTGAAACGAAAATTCTTGGGGGTTTTGTGTATTTTTTTCAATTAGCTAACTTAAGTTGGAGTTCATTTTTTTGGTTTCAGTTATTATTTAGAATAGGGGATACATCAGGCACAGACTATCGTCTGTTGTGTTTTTTTTCGTTTTTTCTGGCTTTTCTCCATATACATTTGCAGCATTTGAGTATAGCGAGTCCGTGCGTATCAAATTGTTCCGGAAAGTCCGAGAAATAAACAAATAATTATGAAAAACCTTCCACAAAAACAAAATATTTATTGTGCACTATTATAATATCTCCAATAGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGGCCAGTGTGACACTGGGTCGTTAACAAGTGTGTAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4190#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCTCGCTGATGGTTTGGTTTGAGACGCGCAAGT 60 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 TTGTGATGCTTGTGAAACGTACAGTGAGTGAAGTGAAACTAAGACCAGTGTAAAACTGGG 120 consensus_4190#1 ------------------------CCGCGGAAATATGATCGGGTTTAGT---TAATCGAG 33 *** * * * *** ** * * consensus_4190#0 TCGTTAAAAAGTGTCTAACAAAAGCAGGGAAAATATTAAGCAGCACCGTTTTATTGCGTG 180 consensus_4190#1 TGGTTATGA----TCTATTTGTGGAGTGAACCGTTTTAGGC--------TTAGCAAAGAG 81 * **** * **** * * * * *** ** ** * * consensus_4190#0 CAATCGAGAATAAACAATTGCAGCTTTGCTTCTCGAGTTCCCTTTGGTGGAAAGCGTTGC 240 consensus_4190#1 AACGAGGGATCAAAAAAGAGAAGCTTTTCTATTTTGTTTGTTTTTGATGCAAATTGAAAC 141 * * ** *** ** * ****** ** * ** **** ** *** * * consensus_4190#0 GGAAAATGAGTGGAACTGTTCGAGTATCGTTCTACTGCCAGAAGTTGCAGCTGTGGTGCA 300 consensus_4190#1 GAAAATTCTTGGGGGTTTTGTGTATTTTTTTCAATTAGC--TAACTTAAGTTGGAGTTCA 199 * *** * ** * * * * * *** * * * * * ** ** ** ** consensus_4190#0 ACGAGCCGATCCTGAGTCCGGTCAATCGTTA--ATTGTGAATCGTCTCGACAGGGAGACC 358 consensus_4190#1 ------TTTTTTTGGTTTCAGTTATTATTTAGAATAGGGGATACATCAGGCACAGA---C 250 * ** * * ** * * *** ** * * ** * ** ** * consensus_4190#0 TAGTGCAAATAACGGACACTTTTGTGAGCTGGGAATTGATTGGCATATAGAAAC-TGTTG 417 consensus_4190#1 TATCGTCTGTTGTGTTTTTTTTCGTTTTTTCTGGCTTTTCTC-CATATACATTTGCAGCA 309 ** * * * *** ** * * ** * ****** * consensus_4190#0 CCCAAAATCAACCATTTGAACCATTCCCAAGACTTTCAGTGGAACAAAGGTACTGTGGTT 477 consensus_4190#1 TTTGAGTATAGCGAGTCCGTGCGTATCAAATTGTTCCGGAAAGTCCGAGAAAT------- 362 * * * * * * * * ** ** * * * ** * consensus_4190#0 GAGGCTAGTAGTTGCAGATTAACTCATCAACATGGGTACAGAGACGGCCTGCGGCAACTA 537 consensus_4190#1 -AAACAAATAATTATGAA--AAACCTTCCACAAAAACA-AAATATTTATTGTGC--ACTA 416 * * * ** ** * ** * ** *** * * * * ** * **** consensus_4190#0 CTACAACGATCCGCCGGCTGGCCCGAGTGCTGCCGCCATGGGAGGATACTATCGCATGTC 597 consensus_4190#1 TTATAA------------TATCTCCAATAGTGATGCTTGTGAAACGTAC-AGTGAGTGAA 463 ** ** * * * * * ** ** * * *** * * ** consensus_4190#0 GTCGGACGAGAGTGGACCGGCACGGAGC-GAATCGCTGACGGACGAGGAGCTTGCCCAGG 656 consensus_4190#1 GTGAAACTAAGG----CCAGTGTGACACTGGGTCGTTAACAAGTGTGTAACCA------- 512 ** ** * * ** * * * * *** * ** * * * * consensus_4190#0 CAACTGTTTCCGCCTCCGATTGTGACACCGATCATGACCTTCATCAGACACCTCAGCAGC 716 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 AGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCATCAAGTACAACATCAGCAAC 776 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 CCTCCCCGAACCGATCTCACCTGCAGCAGCAGCACATGCAACAGCAGCAGCAGCAGCAGC 836 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 AGCATGGACAGCATCAGCACGCGCACCAGCACCACCCGTCGGACGGTCGGGACCGGTCGA 896 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 ATCCATGGGCGCAGCAGCTGCAAAACCACATCAGCACCGGCACCAGCGCAAACCGTGACG 956 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 GGGCCGGACAATTCGCCCGGCCCGTCGCCCGGCCGATCGAGCGGCAACAATTGGCCCTTC 1016 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 CCCAACTACCAGCGGCTGTACAACGAAAACTCGTACAGCATTGCAATTGCGGCGGCGGCA 1076 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 GCGGCGGCCAGCAGTCAGGCGCAGCAACACAACGCGACCCAGCAGCAGCTGCAGCAGCAG 1136 consensus_4190#1 ------------------------------------------------------------ consensus_4190#0 CAAAACCAACAAGCTCAG 1154 consensus_4190#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||