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Anopheles gambiae
cluster # 4193 cluster # 4193       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4193#0 length = 848 sequences # 2  
consensus_4193#1 length = 303 sequences # 1  

consensusID : consensus_4193#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 848
fasta sequence
                              [GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGG-GGAAAAGC-AGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCA-GCGGATGCTTTGCAG-GAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGAAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACTGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAAGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGGATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAACCGTACGC]

[+] EMBL BX609158             [GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGG GGAAAAGC AGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCA GCGGATGCTTTGCAG GAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGAAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACTGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAAGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGGATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAACCGTACGC]
[+] EMBL BM652091             [   ccgAAACAATCACACCCAAGGCTTACTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGGTGGAAAAGCAAGAGCCAGTACAGCAGCTTCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGATGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCTATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCCGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTGGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCATAGTCGTACGGCTAAAGAGTTTATCGACGAGCTGACGGCAACCAC GCAGGCGGATGCTTTG AGCGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTCAGTGATAACCACGAAAACAAGGGTGTCGATTTGTACGTGCTCGAGCGAGCGATTCTAAGCGCTCAC                                                                                                                                                                                                    ]


>consensus_4193#0 GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATG GCAGTAGCGGGGAAAAGCAGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAA ACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAA ATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAA AGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTT AGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTAT CGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCA GCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGG TGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGT CTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGA AAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACT GCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAA GGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGG ATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAA CCGTACGC



consensusID : consensus_4193#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence
                              [CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT]

[+] EMBL AL931652             [CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT]


>consensus_4193#1 CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCG GCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACC CCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGT AGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTG CAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTG CAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4193#0      GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATG 60
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      GCAGTAGCGGGGAAAAGCAGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAA 120
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      ACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGA-ACGCTTCGAGAAGA 179
consensus_4193#1      ------------------------------------CCCGAGGTNTACGCTTCGAGAAGA 24
                                                             ** *   **************

consensus_4193#0      AATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGA 239
consensus_4193#1      AATAC-GCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAA-GCGGAACAGA 82
                      ***** ******************************************* **********

consensus_4193#0      AAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATT 299
consensus_4193#1      AAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATT 142
                      ************************************************************

consensus_4193#0      TAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTA 359
consensus_4193#1      TAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTA 202
                      ************************************************************

consensus_4193#0      TCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGC 419
consensus_4193#1      TCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGC 262
                      ************************************************************

consensus_4193#0      AGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACG 479
consensus_4193#1      AGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT------------------- 303
                      *****************************************                   

consensus_4193#0      GTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCG 539
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      TCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACG 599
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      AAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAAC 659
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      TGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCA 719
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      AGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGG 779
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      GATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAA 839
consensus_4193#1      ------------------------------------------------------------
                                                                                  

consensus_4193#0      ACCGTACGC 848
consensus_4193#1      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)