These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 848 fasta sequence [GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGG-GGAAAAGC-AGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCA-GCGGATGCTTTGCAG-GAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGAAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACTGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAAGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGGATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAACCGTACGC] [+] EMBL BX609158 [GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGG GGAAAAGC AGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCA GCGGATGCTTTGCAG GAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACGAAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAACTGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCAAGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGGGATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAAACCGTACGC] [+] EMBL BM652091 [ ccgAAACAATCACACCCAAGGCTTACTTAGTTTTGGAAAAGAAAACAACTATCGATGGCAGTAGCGGTGGAAAAGCAAGAGCCAGTACAGCAGCTTCTAAAGCAGGGAGCAGAAGGGAAACTGTACATCGGCACCTACAAAGGCAACCGATGTTTGGTGAAGGAACGCTTCGAGAAGAAATACCGCTATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGAAAGCCTTCCAACGATGTGCCGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTGGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCATAGTCGTACGGCTAAAGAGTTTATCGACGAGCTGACGGCAACCAC GCAGGCGGATGCTTTG AGCGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACGGTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCGTCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTCAGTGATAACCACGAAAACAAGGGTGTCGATTTGTACGTGCTCGAGCGAGCGATTCTAAGCGCTCAC ] consensusID : consensus_4193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT] [+] EMBL AL931652 [CCCGAGGTNTACGCTTCGAGAAGAAATACGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAGCGGAACAGAAAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATTTAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTATCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGCAGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4193#0 GTATCAAAACAATCACACCCAAGGCTTATTTAGTTTTGGAAAAGAAAACAACTATCGATG 60 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 GCAGTAGCGGGGAAAAGCAGAACCAGTACAGCAGCTCCTAAAGCAGGGAGCAGAAGGGAA 120 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 ACTGTACATCGGCACCTACAAAGGCAACCGGTGTTTGGTGAAGGA-ACGCTTCGAGAAGA 179 consensus_4193#1 ------------------------------------CCCGAGGTNTACGCTTCGAGAAGA 24 ** * ************** consensus_4193#0 AATACCGCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAAAGCGGAACAGA 239 consensus_4193#1 AATAC-GCCATCCGGCACTCGATCGGCAGCTCACCCGGCAACGCATCAA-GCGGAACAGA 82 ***** ******************************************* ********** consensus_4193#0 AAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATT 299 consensus_4193#1 AAGCCTTCCAACGATGTGCTGCCGCCGGTCTGTCCACCCCAGCCCTTTACGGCGTCGATT 142 ************************************************************ consensus_4193#0 TAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTA 359 consensus_4193#1 TAGAGCAGCGCAAGATCTACATGGAATATCTGGAGCGTAGTCGTACGGCAAAAGAGTTTA 202 ************************************************************ consensus_4193#0 TCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGC 419 consensus_4193#1 TCGACGAGCTGACGGCAACCACGGCAGCGGATGCTTTGCAGGAATCAGCCCAGCTGAAGC 262 ************************************************************ consensus_4193#0 AGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCATCGAAACAATCTAGTGCACG 479 consensus_4193#1 AGCTTGCTGAACAGATCGGCCACATGGTGGGTGTGCTGCAT------------------- 303 ***************************************** consensus_4193#0 GTGATCTGACCACCTCCAACATGCTGCTCGATCCGGTGGAAAAGGGTGCGGAAGAGTCCG 539 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 TCTTCCCGTACCGTCTCGTGACGATCGACTTTGGGCTGTCCCACTTTAGTGATAACCACG 599 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 AAAACAAGGGTGTCGATTTATACGTGCTCGAGCGAGCGATTCTAAGCGCTCACAGTCAAC 659 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 TGCCGGGCTTGTTCGGTATGATACTGGAGGCGTACCGTGAGCACAATACGAACCATTGCA 719 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 AGGAAACAATCGCCAAGTACGAAGAGGTACGGGCCCGGGGACGAAAGCGAACGATGGTGG 779 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 GATAATGTGAGATGAGTACCTCGTTGAATGTTTATTGAACGTTGTCTTAAAGCGAATAAA 839 consensus_4193#1 ------------------------------------------------------------ consensus_4193#0 ACCGTACGC 848 consensus_4193#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||