These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence [CCGCGATAAGCCCGAATCGCGGCCTGAATCGCGCGATAAACGAACACTCATAATCGGCTCAATTTTTTTTCGGGTACCTCCAATTAGTGTCAGAGGACAGTGGACTTCTTTTCCCTAGCGCTCTGTGCCGTTCCCTTTACCCTGTTACCTCCTTTCTACGTGCGCGATAACGCACACCACGATCGCGCAGGACAACCGCTCCGTGCGAGGGCACACACCGAGCGCCGCTTATCAGCTTGCCTGCGTGACGCCATCTAACACACAATTGACGCGTACCCATAGGAGCAGGGGGGGGGCGAGATCACTCGATCGTGCGATCTCTGTCGCGCTATCGCACCCGGCGGCCCGTGTGGCAGGCTCTTGATTTAAATGCTTCCTTCTTGCTGCCGACCGGACACATTACCGGCTGAACGATCGTTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTGCATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGAAAAGGGGGAAAAAAGCTCACAATGTACGGACGTCAGGAATCGCAAGGGC] [+] EMBL BM587064 [CCGCGATAAGCCCGAATCGCGGCCTGAATCGCGCGATAAACGAACACTCATAATCGGCTCAATTTTTTTTCGGGTACCTCCAATTAGTGTCAGAGGACAGTGGACTTCTTTTCCCTAGCGCTCTGTGCCGTTCCCTTTACCCTGTTACCTCCTTTCTACGTGCGCGATAACGCACACCACGATCGCGCAGGACAACCGCTCCGTGCGAGGGCACACACCGAGCGCCGCTTATCAGCTTGCCTGCGTGACGCCATCTAACACACAATTGACGCGTACCCATAGGAGCAGGGGGGGGGCGAGATCACTCGATCGTGCGATCTCTGTCGCGCTATCGCACCCGGCGGCCCGTGTGGCAGGCTCTTGATTTAAATGCTTCCTTCTTGCTGCCGACCGGACACATTACCGGCTGAACGATCGTTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTGCATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGAAAAGGGGGAAAAAAGCTCACAATGTACGGACGTCAGGAATCGCAAGGGC] [+] EMBL BM653831 [ cCGATCG TTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTGCATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGAAAAGGGGGAAAAAAGCTCACCATGTACGGACGTCAGGAATCGCAAGGG ] consensusID : consensus_4195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [CCGCCCACGCGTCCGGATCGTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTAGTGCATTCTACCGAGACGACTAGTGCAGTGAAAGACTCTTATTACACGCCCAGTTTAGTACGAAAAGCCGGAAAAAGCTCACCATGTACGGACGTCAGGAATCGCAAGGG] [+] EMBL BM646741 [CCGCCCACGCGTCCGGATCGTTTGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTAGTGCATTCTACCGAGACGACTAGTGCAGTGAAAGACTCTTATTACACGCCCAGTTTAGTACGAAAAGCCGGAAAAAGCTCACCATGTACGGACGTCAGGAATCGCAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4195#0 CCGCGATAAGCCCGAATCGCGGCCTGAATCGCGCGATAAACGAACACTCATAATCGGCTC 60 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 AATTTTTTTTCGGGTACCTCCAATTAGTGTCAGAGGACAGTGGACTTCTTTTCCCTAGCG 120 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 CTCTGTGCCGTTCCCTTTACCCTGTTACCTCCTTTCTACGTGCGCGATAACGCACACCAC 180 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 GATCGCGCAGGACAACCGCTCCGTGCGAGGGCACACACCGAGCGCCGCTTATCAGCTTGC 240 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 CTGCGTGACGCCATCTAACACACAATTGACGCGTACCCATAGGAGCAGGGGGGGGGCGAG 300 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 ATCACTCGATCGTGCGATCTCTGTCGCGCTATCGCACCCGGCGGCCCGTGTGGCAGGCTC 360 consensus_4195#1 ------------------------------------------------------------ consensus_4195#0 TTGATTTAAATGCTTCCTTCTTGCTGCCGACCGGACACATTACCGGCTGAACGATCGTTT 420 consensus_4195#1 ------------------------------CCGCCCACGCGTCCGG-------ATCGTTT 23 *** *** **** ******* consensus_4195#0 TGGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTTGTG 480 consensus_4195#1 -GGGACGGTCTGTGCAGTGTTTGTGCGTGTTTGGTGGCTGTGGTGATCGTGTGTTTAGTG 82 ******************************************************* *** consensus_4195#0 CATTCTACCGAGACGACTAGTGCAGTGAAAAACGCTTAAAACACGCCCAGTTTAGTACGA 540 consensus_4195#1 CATTCTACCGAGACGACTAGTGCAGTGAAAGACTCTTATTACACGCCCAGTTTAGTACGA 142 ****************************** ** **** ******************** consensus_4195#0 AAAGGGGGAAAAAAGCTCACAATGTACGGACGTCAGGAATCGCAAGGGC 589 consensus_4195#1 AAAGCCGGAAAAA-GCTCACCATGTACGGACGTCAGGAATCGCAAGGG- 189 **** ******* ****** *************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||