These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1071 fasta sequence [CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAGTAAGCCCCCCCCCTGTACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTACAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCACCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCGACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCTGCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAATGGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGAGTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGATAAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCACCACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCGAAAAAAA] [+] EMBL BM657081 [CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAGTAAGCCCCCCCCCTGTACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTACAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCACCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCC ] [-] EMBL CNS09NZM [ CCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCC CCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCGACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCTGCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAATGGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGAGTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGATAAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCACCACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCGAAAAAAA] consensusID : consensus_4199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCGGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATGCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAGTAAGCGCCCCCCCTGGCCCCCCGGGAA] [+] EMBL CNS09NZL [TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCGGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATGCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAGTAAGCGCCCCCCCTGGCCCCCCGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4199#0 ---------------CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGT 45 consensus_4199#1 TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCC-TTGTTCTTGTCCTACTTGT 59 * * ****************** ******************* consensus_4199#0 CGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTC 105 consensus_4199#1 CGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTC 119 ********************************* ************************** consensus_4199#0 GAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCA 165 consensus_4199#1 GAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCG-----GTGCCTGTGTGCA 174 ************************** **** ********** ************* consensus_4199#0 TATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTAC 225 consensus_4199#1 TATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTAC 234 ************************************************************ consensus_4199#0 AGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTG 285 consensus_4199#1 AGTGCATATGGGCGGATGCC-GTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTG 293 ***************** ** *************************************** consensus_4199#0 TCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAA 345 consensus_4199#1 TCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAA 353 ************************************************************ consensus_4199#0 CGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGT 405 consensus_4199#1 CGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGT 413 ************************************************************ consensus_4199#0 TGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAG 465 consensus_4199#1 TGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAG 473 *************************************************** ******** consensus_4199#0 TAAGCCCCCCCCCTG-TACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTA 524 consensus_4199#1 TAAGCGCCCCCCCTGGCCCCCCGGGAA--------------------------------- 500 ***** ********* * * **** consensus_4199#0 CAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCG 584 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 TTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCA 644 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 CCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCG 704 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 ACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCT 764 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 GCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAAT 824 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 GGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGA 884 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 GTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGAT 944 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 AAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCAC 1004 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 CACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCG 1064 consensus_4199#1 ------------------------------------------------------------ consensus_4199#0 AAAAAAA 1071 consensus_4199#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||