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Anopheles gambiae
cluster # 4199 cluster # 4199       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4199#0 length = 1071 sequences # 2  
consensus_4199#1 length = 500 sequences # 1  

consensusID : consensus_4199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1071
fasta sequence
                              [CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAGTAAGCCCCCCCCCTGTACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTACAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCACCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCGACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCTGCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAATGGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGAGTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGATAAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCACCACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCGAAAAAAA]

[+] EMBL BM657081             [CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAGTAAGCCCCCCCCCTGTACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTACAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCACCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCC                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CNS09NZM             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCC CCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCGACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCTGCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAATGGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGAGTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGATAAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCACCACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCGAAAAAAA]


>consensus_4199#0 CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTA TCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACA CCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCATATGCAAAACTGGCC ACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGG ATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGT GTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTT GCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCG CATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAGTAAGCCCCCCCCCTG TACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTACAACGGCTCGCAACCT AGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCGTTTGTTGGAGCAGGTG AGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCACCGTGTGAAAATGCAA AACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCGACGGCGGCAGTAAGGC AATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCTGCTTCCGGCGTTCGTT GCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAATGGGCAAACAAATCCCT GCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGAGTGTTTTTCTCCCTTG CTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGATAAGGAAGAAGAAGTGT TCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCACCACCACCACCACGGTA GCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCGAAAAAAA



consensusID : consensus_4199#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence
                              [TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCGGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATGCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAGTAAGCGCCCCCCCTGGCCCCCCGGGAA]

[+] EMBL CNS09NZL             [TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCCTTGTTCTTGTCCTACTTGTCGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTCGAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCGGTGCCTGTGTGCATATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCATATGGGCGGATGCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAGTAAGCGCCCCCCCTGGCCCCCCGGGAA]


>consensus_4199#1 TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCCTTGTTCTTGTCCTACTTGTC GCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTCG AGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCGGTGCCTGTGTGCATATGCA AAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTACAGTGCA TATGGGCGGATGCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTGTCTTTGT GTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAACGGCAGC CGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGTTGCTTTG CGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAGTAAGCGC CCCCCCTGGCCCCCCGGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4199#0      ---------------CCGCGACCCGTGCGCGTTGTGTGCCCTTGTTCTTGTCCTACTTGT 45
consensus_4199#1      TGGGTTTTTCCGGACCGACCGACCGTGCGCGTTGTGTGCC-TTGTTCTTGTCCTACTTGT 59
                                     *  *   ****************** *******************

consensus_4199#0      CGCTCGCCAGCGCTATCCATCACGGCATCGTTCAAGACGGAGGCAAGCGAATCTTGCGTC 105
consensus_4199#1      CGCTCGCCAGCGCTATCCATCACGGCATCGTTCGAGACGGAGGCAAGCGAATCTTGCGTC 119
                      ********************************* **************************

consensus_4199#0      GAGCTTTGCATCACACCGTGCGTGTTGTTCTGCGGATCGGCGTGTGTGTGCCTGTGTGCA 165
consensus_4199#1      GAGCTTTGCATCACACCGTGCGTGTTATTCTACGGATCGGCG-----GTGCCTGTGTGCA 174
                      ************************** **** **********     *************

consensus_4199#0      TATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTAC 225
consensus_4199#1      TATGCAAAACTGGCCACCCAATTCGTACGGAGTGGTCCTACTGCTGCTGCTGCTCGGTAC 234
                      ************************************************************

consensus_4199#0      AGTGCATATGGGCGGATACCCGTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTG 285
consensus_4199#1      AGTGCATATGGGCGGATGCC-GTGAATGGGGTGAACTTCGCAAAACATTAGCAGCAGCTG 293
                      ***************** ** ***************************************

consensus_4199#0      TCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAA 345
consensus_4199#1      TCTTTGTGTGTGAGTGTGTGTGTCCGGTCATCTCCCGCGCAACAGGAACGGGAACGGGAA 353
                      ************************************************************

consensus_4199#0      CGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGT 405
consensus_4199#1      CGGCAGCCGACAGTTGCATTCCATCAAATAGCGCATCATCATCATCATTGTCGTGGTGGT 413
                      ************************************************************

consensus_4199#0      TGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCCTTGTGGAG 465
consensus_4199#1      TGCTTTGCGTTGGCGCATTATCATCACCGCCACGGTAGCAGCCCAGTCGTCTTTGTGGAG 473
                      *************************************************** ********

consensus_4199#0      TAAGCCCCCCCCCTG-TACACAGGGAGCCTAGCAAGCACATCGGCCAGCGTACCGAGCTA 524
consensus_4199#1      TAAGCGCCCCCCCTGGCCCCCCGGGAA--------------------------------- 500
                      ***** *********   * * ****                                  

consensus_4199#0      CAACGGCTCGCAACCTAGCAAACCCCAGGTAGTGCTAATAATCCCTCCCAGCTCGGACCG 584
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      TTTGTTGGAGCAGGTGAGAGACATCGAAACGCGAGCGGTCTGCAGGAACGTCCCCTTCCA 644
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      CCGTGTGAAAATGCAAAACATCTTCTAGTGTCCAAATTGCGCCCCCAAAGAGGTAGTGCG 704
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      ACGGCGGCAGTAAGGCAATCAGTTAGTGGAAAACATCGATGACATAAATCATTTTCCCCT 764
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      GCTTCCGGCGTTCGTTGCCGATCAGTTGTTACTTGGATTTAGATTTGCGGGCAAGCGAAT 824
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      GGGCAAACAAATCCCTGCCCTGTGAATGTGGTGCAATTTGTGTGCTGTGTGCGTGTGCGA 884
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      GTGTTTTTCTCCCTTGCTAGCGTGGCGGCCGCTATCAAGGCGAGATATTTAGCAACAGAT 944
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      AAGGAAGAAGAAGTGTTCCTGCTCCCTGGTTCTGTAACGCTGCTGTACCACCACCACCAC 1004
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      CACCACCACCACGGTAGCAAATTGGCATTGAGCATCGGCAAACAAAGTAGTCATCGACCG 1064
consensus_4199#1      ------------------------------------------------------------
                                                                                  

consensus_4199#0      AAAAAAA 1071
consensus_4199#1      -------
                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)