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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[AGAATCGGCACGAGGCNNTACGGGCTGGAGCTGCTGCGCACCTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGAGTCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGGCCGAAGGATTTCCAGTCATGATTGAAGACGGAGCTCGTAGTCCTACCAAAGACCTGCTGTACCCGAATACGTCATGACGCAGGGGTATATAGCTCGGGACCTGATTACGGTGCGTTGTAACGCGAGCANAAGTGCACNGCCAAGGAACNGAATTCGAANAATCTTACCGNNCAANCGGAATATTACAGTACTAGCCACTGNACAAACAGACTTGATTGCAACACATTCTTGACNNTCAGGGCCTTTGGCATCCGGACCGANTTNCCGAAGTTCGGGCGCAAGTACCTTAAGGGTAGCCCCAGTTANTNTTNATTCCAAAGGGGCAGCANCCGGNAGAGNCAAGGGTAGTTCAAGCGGCATAAGGCCAAAATTCCGGAAAAACGGNTTATTGGANNACNCCNGGACNTATNCCAGGGGGAGGG]
[+] EMBL BX468586 [AGAATCGGCACGAGGCNNTACGGGCTGGAGCTGCTGCGCACCTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGAGTCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGGCCGAAGGATTTCCAGTCATGATTGAAGACGGAGCTCGTAGTCCTACCAAAGACCTGCTGTACCCGAATACGTCATGACGCAGGGGTATATAGCTCGGGACCTGATTACGGTGCGTTGTAACGCGAGCANAAGTGCACNGCCAAGGAACNGAATTCGAANAATCTTACCGNNCAANCGGAATATTACAGTACTAGCCACTGNACAAACAGACTTGATTGCAACACATTCTTGACNNTCAGGGCCTTTGGCATCCGGACCGANTTNCCGAAGTTCGGGCGCAAGTACCTTAAGGGTAGCCCCAGTTANTNTTNATTCCAAAGGGGCAGCANCCGGNAGAGNCAAGGGTAGTTCAAGCGGCATAAGGCCAAAATTCCGGAAAAACGGNTTATTGGANNACNCCNGGACNTATNCCAGGGGGAGGG]
consensusID : consensus_4206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence
[TGCAACACGCATCGACCGTTTCGTTACGCTCGAGCCTTTCCGATTCGCGGCTCTCGCTACATAATGGGGCGCAAGGCGCCTCGCCGGGCGGACCGTCGCCCCCGATCGCACCGGACGCCATATCGGTGCAAAGCTTCTCGTCCGTCGCGTCCCGTGGCGAGGAGGATGAGTTTATGCTCAACCCCTCGGGGTACGGTGGACGCGCGCGCAACTCGTCCCCGTTTCGTGATCTCGACTTCATTCCCAACTTCTGCATTGCGGCGGTGGATCGGGACGGGCTGGAGCTGCTGCGCAACTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGCTCGTGTCCTACCAAAGCCTGCTGTACCCAATACTCATGACGCAAGGTATATACTCGGCCCTGTTCGTGCTGTACGCGAGCAAG]
[+] EMBL BX608899 [TGCAACACGCATCGACCGTTTCGTTACGCTCGAGCCTTTCCGATTCGCGGCTCTCGCTACATAATGGGGCGCAAGGCGCCTCGCCGGGCGGACCGTCGCCCCCGATCGCACCGGACGCCATATCGGTGCAAAGCTTCTCGTCCGTCGCGTCCCGTGGCGAGGAGGATGAGTTTATGCTCAACCCCTCGGGGTACGGTGGACGCGCGCGCAACTCGTCCCCGTTTCGTGATCTCGACTTCATTCCCAACTTCTGCATTGCGGCGGTGGATCGGGACGGGCTGGAGCTGCTGCGCAACTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGCTCGTGTCCTACCAAAGCCTGCTGTACCCAATACTCATGACGCAAGGTATATACTCGGCC ]
[+] EMBL BX615292 [ TGCTGCGCAACTACCTCACCGATGCGTTCCAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCCACGTACAGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGCTCGTGTCCTACCAAAGCCTGCTGTACCCAATACTCATGACGCAGGGTATATACTCGGCCCTGTTCGTGCTGTACGCGAGCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4206#0 AGAATCGGCACGAGGCNNTACGGGCTGGAGCTGCTGCGCACCTACCTCACCGATGCGTTC 60
consensus_4206#1 ----------------------------TGCAAC-ACGCATCGACCGTTTCGTTACGCTC 31
** * **** * *** ** * ** **
consensus_4206#0 CAGTGCGCTTACCATCCGCTGCACGGGCTGTTCGAGAAGCTGTCGAACTGTTTCTACTCC 120
consensus_4206#1 GA--GCCTTTCCGATTCGCGGCTCTCGCTACATAATGGGGCG-CAAGGCGCCTC-GCCGG 87
* ** ** * ** *** ** * *** * * * * * * ** *
consensus_4206#0 ACGTACAGCTGCTGGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCGGCCATGAACGA 180
consensus_4206#1 GCGGACCGTCGCCCCCGATCGCACCGGACGCCATATCG-GTGCAAAGCTTC--TCGTCCG 144
** ** * ** * *** * * *** **** * * * * *
consensus_4206#0 GTGGATCTCGAGTCGTGA--GCCGGATCTACACGCTGGTGCTGACGGTTATGTTTCCCGC 238
consensus_4206#1 TCGCGTCCCGTGGCGAGGAGGATGAGTTTATGCTCAACCCCTCGGGGT-ACGGTGGACGC 203
* ** ** * ** * * * * ** * * ** *** * * * ***
consensus_4206#0 CCTGGCCGAAGGATTTCCAGTCATGATTGAAGACGGAGCTCGTAGTCCTACCAAAGACCT 298
consensus_4206#1 GCGCGCAACTCGTCCCCGTTTCGTGAT-----------CTCGACTTCATTCCCAACTTCT 252
* ** * * ** **** **** ** * ** ** **
consensus_4206#0 GCTGTACCCGAATACGTCATGACGCAGGGGTATATAGCTCGGGACCTGATTAC-GGTGCG 357
consensus_4206#1 GCATTGCGGCGGTGGATCGGGACG-GGCTGGAGCTGCTGCGCAACTACCTCACCGATGCG 311
** * * * ** **** * * * * ** ** * ** * ****
consensus_4206#0 TTGTAACGCGAGCANAAGTGCACNGCCAAGGAACNGAATTCGAANAATCTTACCGNNCAA 417
consensus_4206#1 TTCCAGTGCGCTTACCA-TCCGCTGC--ACGGGCTG--TTCGAGAAGC--TGTCGAACTG 364
** * *** * * * * * ** * * * * ***** * * ** *
consensus_4206#0 NCGGAATATTACAGTACTAGCCACTGNACAAACAGACTTGATTGCAACACATTCTTGACN 477
consensus_4206#1 TTTCTACTCCAC-GTAC-AGCTGCTGGAAGTACACGCCGCACTCGATCCTGTGCGAGCCG 422
* ** **** *** *** * *** * * * * * * * * *
consensus_4206#0 NTCAGGGCCTTTGGCATCCGGACCGANTTNCCGAAGTTCGGGCGCAAGT--ACCTTAAGG 535
consensus_4206#1 GCCATGAACGAGTGGATCTCGATCGTGAGCCGGATCTACACGCTGGTGCTGACGGTTATG 482
** * * * *** ** ** * ** * * ** * ** * * *
consensus_4206#0 GTAGCCCCAGTTANTNTTNATTCCAAAGGGGCAGCANCCGGNAGAGNCAAGGGTAGTTCA 595
consensus_4206#1 TTTCCCGCCCTGCCGAAGGATTCCATCATGATTGAAGACGAGC---TCGTGTCCTACCAA 539
* ** * * ****** * * * ** * * *
consensus_4206#0 AGCGGCATAAGGCCAAAATTCCGGAAAAACGGNTTAT---TGGANNACNCCNGGACNTAT 652
consensus_4206#1 AGCCTGCTGTACCCAATACTCATGACGCAAGGTATATACTCGGCCCTGTTCGTGCTGTAC 599
*** * **** * ** ** * ** *** ** * * **
consensus_4206#0 NCCAGGGGGAGGG 665
consensus_4206#1 GCGAGCAAG---- 608
* ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||