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Anopheles gambiae
cluster # 4209 cluster # 4209       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4209#0 length = 709 sequences # 1  
consensus_4209#1 length = 405 sequences # 1  
consensus_4209#2 length = 216 sequences # 1  

consensusID : consensus_4209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 709
fasta sequence
                              [CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAAGGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGCGCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTGTGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCGCAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAAAAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAAAGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG]

[+] EMBL AL933556             [CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAAGGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGCGCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTGTGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCGCAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAAAAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAAAGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG]


>consensus_4209#0 CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAA GGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGC GCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTG TGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCG CAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAA AAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGA TGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGT GGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAA AGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCAC TAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCG CATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTT TGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG



consensusID : consensus_4209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence
                              [CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGAAAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTGGTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTCTTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTTTNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCAGCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA]

[+] EMBL BX469130             [CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGAAAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTGGTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTCTTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTTTNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCAGCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA]


>consensus_4209#1 CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAG GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGA AAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTG GTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTC TTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTT TNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCA GCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA



consensusID : consensus_4209#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT]

[+] EMBL BM579318             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT]


>consensus_4209#2 CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAA GAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTG CTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGG TTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4209#0      CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAA 60
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      GGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGC 120
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      GCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTG 180
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      TGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCG 240
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      CAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAA 300
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      ------------------------------------------------------------
                                                                                  

consensus_4209#0      AAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCAC-CAA-ACACACACA-CAG 357
consensus_4209#2      ----------------------------------CCGCCCACGCGT-CCGCCCACG-C-G 23
consensus_4209#1      CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAG 60
                                                            ***  *    * * ***  * *

consensus_4209#0      GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAA--GAAGAAGGACCTGATTAGGA 415
consensus_4209#2      TCCGGTTGCTTAGAAGAGAGATT-ACGAAGAAGAAGAA--GAAGAAGGACCTGATTAGGA 80
consensus_4209#1      GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGA 120
                          ************* ***   *  * ******* *  ********************

consensus_4209#0      AAGG-TGGTTA-TGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTT-- 471
consensus_4209#2      AAGG-TGGTTA-TGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGA-TCGTT-- 135
consensus_4209#1      AAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTG 180
                      **** ****** **************************************** ****   

consensus_4209#0      GTGGGTGAAAGCCAA-TGATGTGG-GGTGTAA--AAGAAGGAAGGAACGAAGGAAGGTTC 527
consensus_4209#2      GTGGATGAAACCCTG-T-ATGTGG-GGTGTAA--TTGAAAG-------GAAGGAAGGTTC 183
consensus_4209#1      GTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTC 240
                      **** *** * **   * ****** *******    *** *       ************

consensus_4209#0      TTCCCC-TCTTCACTAGCCCCTC--TAACCTT--AAATGTGTATACCTACT--GTTCGTT 580
consensus_4209#2      TTCCCC-TCTTCACTAGCCCCTC--TAACCTT--GAAT---------------------- 216
consensus_4209#1      TTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTT 300
                      ****** **************    ***** *   * *                      

consensus_4209#0      TTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGA 640
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      TNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCA 360
                                                                                  

consensus_4209#0      TGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACA 700
consensus_4209#2      ------------------------------------------------------------
consensus_4209#1      GCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA--------------- 405
                                                                                  

consensus_4209#0      CAAAGAGAG 709
consensus_4209#2      ---------
consensus_4209#1      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)