These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAAGGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGCGCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTGTGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCGCAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAAAAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAAAGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG] [+] EMBL AL933556 [CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAAGGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGCGCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTGTGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCGCAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAAAAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCACCAAACACACACACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTTGTGGGTGAAAGCCAATGATGTGGGGTGTAAAAGAAGGAAGGAACGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTAAATGTGTATACCTACTGTTCGTTTTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGATGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACACAAAGAGAG] consensusID : consensus_4209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGAAAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTGGTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTCTTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTTTNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCAGCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA] [+] EMBL BX469130 [CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAGGGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGAAAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTGGTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTCTTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTTTNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCAGCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA] consensusID : consensus_4209#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT] [+] EMBL BM579318 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGCTTAGAAGAGAGATTACGAAGAAGAAGAAGAAGAAGGACCTGATTAGGAAAGGTGGTTATGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGATCGTTGTGGATGAAACCCTGTATGTGGGGTGTAATTGAAAGGAAGGAAGGTTCTTCCCCTCTTCACTAGCCCCTCTAACCTTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4209#0 CCCCGAGGTTAATTTGTTGTAAGCTCGGCGNNAGAGGAAGAAATCGAACCCATCGGTTAA 60 consensus_4209#2 ------------------------------------------------------------ consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 GGTAACCCCGCGCTCCTTACCCTTTCTCCTTCCCTTTACGTAGTATGTAGGTTGCATCGC 120 consensus_4209#2 ------------------------------------------------------------ consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 GCACGCACGTTAAGAAGAAGAGATAAGAAAAAACAAACAGTTTCATTTCTTTTGCGTTTG 180 consensus_4209#2 ------------------------------------------------------------ consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 TGCACTTGTTGTAGGCTAGCTTTCCTGTGTAGATGTAGTTCGTGTTGTCATGTAATGTCG 240 consensus_4209#2 ------------------------------------------------------------ consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 CAACGTAAAACAAAAGAGTCTTTAGCCCCCTGCTGGTTGAAAGAAGGGAAATGAAGAAAA 300 consensus_4209#2 ------------------------------------------------------------ consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 AAAAACGTGAAAAATGTACGAAGCTTTTTAAAAATTATCCAC-CAA-ACACACACA-CAG 357 consensus_4209#2 ----------------------------------CCGCCCACGCGT-CCGCCCACG-C-G 23 consensus_4209#1 CCAGAATCGCCACGAGGNGTAGCCTTTTTAAAAATTATCCAGCCAACACACACACAACAG 60 *** * * * *** * * consensus_4209#0 GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGAA--GAAGAAGGACCTGATTAGGA 415 consensus_4209#2 TCCGGTTGCTTAGAAGAGAGATT-ACGAAGAAGAAGAA--GAAGAAGGACCTGATTAGGA 80 consensus_4209#1 GGATGTTGCTTAGAAGAAAGAGAGATTACGAAGAAGCAACGAAGAAGGACCTGATTAGGA 120 ************* *** * * ******* * ******************** consensus_4209#0 AAGG-TGGTTA-TGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTT-- 471 consensus_4209#2 AAGG-TGGTTA-TGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGA-TCGTT-- 135 consensus_4209#1 AAGGGTGGTTACTGTTTTACGTTACACGCGTTACGTTTGTTGCTGGCATCGAATCGTGTG 180 **** ****** **************************************** **** consensus_4209#0 GTGGGTGAAAGCCAA-TGATGTGG-GGTGTAA--AAGAAGGAAGGAACGAAGGAAGGTTC 527 consensus_4209#2 GTGGATGAAACCCTG-T-ATGTGG-GGTGTAA--TTGAAAG-------GAAGGAAGGTTC 183 consensus_4209#1 GTGGGTGACAGCCAAATGATGTGGCGGTGTAACAAGGAAGGAAGGAACGAAGGAAGGTTC 240 **** *** * ** * ****** ******* *** * ************ consensus_4209#0 TTCCCC-TCTTCACTAGCCCCTC--TAACCTT--AAATGTGTATACCTACT--GTTCGTT 580 consensus_4209#2 TTCCCC-TCTTCACTAGCCCCTC--TAACCTT--GAAT---------------------- 216 consensus_4209#1 TTCCCCGTCTTCACTAGCCCCGTCGTAACCGTTAAAGTGTGTATACCTACATGGTTCGTT 300 ****** ************** ***** * * * consensus_4209#0 TTTCGGCCCGTTTTTTTCCGCATTAGGTAGAGTAAATAAGCTTTTGCAGCCCTTCTGCGA 640 consensus_4209#2 ------------------------------------------------------------ consensus_4209#1 TNTTCGGGCCCGGTTNTTGTGNCCGCATTGAGGGTAGAGATAAGATAAGGCGTTTGTGCA 360 consensus_4209#0 TGAAGATGCGATGCTGTGTTTGTACATATATGTATCACTAAAGCAAACGAAACGATNACA 700 consensus_4209#2 ------------------------------------------------------------ consensus_4209#1 GCCCTTCCTGCGAGTGAAGATGCGAATGCGTGTGTTNTGGTAGCA--------------- 405 consensus_4209#0 CAAAGAGAG 709 consensus_4209#2 --------- consensus_4209#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||