These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [CCGTTGGTGCGTAGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTACCCCAACTGTTGGTGTTTCGTGCAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAACACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGCCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGCGTACGCATATGAGGCGAACCAGCCCGAACTGAAAATATAGCTTTTTAATATAAACTAACCCTTATAAACCCGT] [+] EMBL BM587020 [CCGTTGGTGCGTAGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTACCCCAACTGTTGGTGTTTCGTGCAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAACACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGCCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGCGTACGCATATGAGGCGAACCAGCCCGAACTGAAAATATAGCTTTTTAATATAAACTAACCCTTATAAACCCGT] [+] EMBL BM638724 [ ccgGTAGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTGTTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATCCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGCGAACCAGCCCGAACTGAAAATAT ] consensusID : consensus_4211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCGCCCACGCGTCCGGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTGTTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGC] [+] EMBL BM650974 [CCGCCCACGCGTCCGGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTGTTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGATCGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAAGTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAATCTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTATCTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACCGGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATGTACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCACGCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGATCCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4211#0 CCGTTGGTGCGT--AGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTACCCCAACTG 58 consensus_4211#1 CCGCCCACGCGTCCGGCAGAGCGCAATCAAAATAAAGAAAGCATCCAAGTGCCCCGACTG 60 *** **** *********************************** **** **** consensus_4211#0 TTGGTGTTTCGTGCAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGAT 118 consensus_4211#1 TTGGCGTTTCGGACAACAAAGCAAAACCAGCCATCCATACATTCCATTCTCGTGCTCGAT 120 **** ****** *********************************************** consensus_4211#0 CGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAA 178 consensus_4211#1 CGCCCTGCGTGCCCCAGCTATTACCGAAGCGTGTGAAAATCGGCCAACAAGATGGGGAAA 180 ************************************************************ consensus_4211#0 GTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAAT 238 consensus_4211#1 GTGTTCCTCGAGCATATAAACGGTCAAAAGCTGTACAACTGCGCTGCGTGCGAGACGAAT 240 ************************************************************ consensus_4211#0 CTCACCAACAAACGGGAGCTGATTAACACCCGCTTCACTGGAGCCACTGGCCGCGCCTAT 298 consensus_4211#1 CTCACCAACAAACGGGAGCTGATTAGCACCCGCTTCACTGGAGCCACTGGCCGCGCCTAT 300 ************************* ********************************** consensus_4211#0 CTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACC 358 consensus_4211#1 CTGTTCAAGCGGGTGGTCAACCTGACGTACTCCCAGGTGCAGGATCGCATCATGCTGACC 360 ************************************************************ consensus_4211#0 GGACGCCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATG 418 consensus_4211#1 GGACGTCATATGGTGCGGGACGTGATGTGCAAGAACTGCAAGGCCAAGCTCGGCTGGATG 420 ***** ****************************************************** consensus_4211#0 TACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCAC 478 consensus_4211#1 TACGAGTTTGCGACGGAGGAGACGCAAAAGTACAAGGAAGGCCGTGTCATTCTCGAGCAC 480 ************************************************************ consensus_4211#0 GCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGAT 538 consensus_4211#1 GCACTGATTGCCGAATCGGAAGGCTTCCCCGATGCATGATAACCATTCGCCCGCCCAGAT 540 ************************************************************ consensus_4211#0 CCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGCGTACGCATATGAGGCGAACCAGCC 598 consensus_4211#1 CCGGAGTCGCACCACTCTCACACTCTCCTTCTCCGTGTACGCATATGAGGC--------- 591 *********************************** *************** consensus_4211#0 CGAACTGAAAATATAGCTTTTTAATATAAACTAACCCTTATAAACCCGT 647 consensus_4211#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||