These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 918 fasta sequence [GCTGAACAGACACGTACTCTTCCGTGGCTGTGGTGTTCTGGTTGAAGGTAGATTACAATCGTTGTGATAAAATAATTAAATCCGCTTCAGTGATAAGAAGCAGCCGCCATCGCGTTTCATTAGCACCCAAGCCACACAAACCACGATCAGCGCGATCGCTTTCGTAGTGGTGTCATTTGTTGTCGTCATTGAAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAGGGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCA-CATCAAGTTGTAGGTCACCGGCACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGAGAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTCGCTG-TTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCAGAACAAGCTAAATGAGTTGCGCAATCGCAAGGGCACGGTTAGGATTAATCAACCCAAGGTGACGCGACAGGACAAGGCACGTCCGCCGGACGATGAGCAGGAACCGTTCGGTGAAAGCCTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGACAAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTCAGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTTTACCACGGCCAATCGATCATACAGGCGGACAGAGTGCGGAATTTGTT] [+] EMBL CNS099BZ [GCTGAACAGACACGTACTCTTCCGTGGCTGTGGTGTTCTGGTTGAAGGTAGATTACAATCGTTGTGATAAAATAATTAAATCCGCTTCAGTGATAAGAAGCAGCCGCCATCGCGTTTCATTAGCACCCAAGCCACACAAACCACGATCAGCGCGATCGCTTTCGTAGTGGTGTCATTTGTTGTCGTCATTGAAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAGGGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCA CATCAAGTTGTAGGTCACCGGCACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGAGAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTCGCTG TTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCAGAACAAGCTAAATGAGTTGCGCAATCGCAAGGGCACGGTTAGGATTAATCAACCCAAGGTGACGCGACAGGACAAGGCACGTCCGCCGGACGATGAGCAGGAACCGTTCGGTGAAAGCCTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGACAAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTCAGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCA ] [-] EMBL CNS099C0 [ AAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAGGGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCAGCATCAAGTTGTAGGTCACCGGCACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGAGAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTCGCTGTTTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCAGAACAAGCTAAATGAGTTGCGCAATCGCAAGGGCACGGTTAGGATTAATCAACCCAAGGTGACGCGACAGGACAAGGCACGTCCGCCGGACGATGAGCAGGAACCGTTCGGTGAAAGCCTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGACAAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTCAGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTTTACCACGGCCAATCGATCATACAGGCGGACAGAGTGCGGAATTTGTT] consensusID : consensus_4217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GGCAGAATCGCCACGAGGTATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGACTATATGGGCTTTATGAAGCGCACCAAATCCGGCATCATACGCAACTTCAACGTGGCCTGTTTGGATGAGTTTTTCTCGATGAAAACATGGCACTGGAGGACATTCTAACGCCTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTATACCACGGCCAATCAATCATACAGGCAGCACAGAGTGCGGAATTGATCACGAACCTTTACTCGCTGCACGACAAGCGCACGCTGAAGGAGCTGCGCCATCGCTGGATCAAACCGACGCGCGTGCAACCGATCGACGAGATACGGGACTACTTTGGCGAGAGTGTCGGCCATGTACTTTTCCTTCCTTGGGTTTTACACGTACGCACTGGTCGTGCCGACGGTGTTCGG] [+] EMBL AL932503 [GGCAGAATCGCCACGAGGTATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAGATTGCCGACTATATGGGCTTTATGAAGCGCACCAAATCCGGCATCATACGCAACTTCAACGTGGCCTGTTTGGATGAGTTTTTCTCGATGAAAACATGGCACTGGAGGACATTCTAACGCCTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGCACAAAGATCATCCTATACCACGGCCAATCAATCATACAGGCAGCACAGAGTGCGGAATTGATCACGAACCTTTACTCGCTGCACGACAAGCGCACGCTGAAGGAGCTGCGCCATCGCTGGATCAAACCGACGCGCGTGCAACCGATCGACGAGATACGGGACTACTTTGGCGAGAGTGTCGGCCATGTACTTTTCCTTCCTTGGGTTTTACACGTACGCACTGGTCGTGCCGACGGTGTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4217#0 GCTGAACAGACACGTACTCTTCCGTGGCTGTGGTGTTCTGGTTGAAGGTAGATTACAATC 60 consensus_4217#1 ------------------------------------------------------------ consensus_4217#0 GTTGTGATAAAATAATTAAATCCGCTTCAGTGATAAGAAGCAGCCGCCATCGCGTTTCAT 120 consensus_4217#1 ------------------------------------------------------------ consensus_4217#0 TAGCACCCAAGCCACACAAACCACGATCAGCGCGATCGCTTTCGTAGTGGTGTCATTTGT 180 consensus_4217#1 ------------------------------------------------------------ consensus_4217#0 TGTCGTCATTGAAAATCCGTCCGTCTGTCCGCGGAATGGCCTTGTGATCGTGATGCACAG 240 consensus_4217#1 ------------------------------------------------------------ consensus_4217#0 GGTAGCGTGTAGAAAGGCAACGACATCGCGAACGCGTCACATCAAGTTGTAGGTCACCGG 300 consensus_4217#1 ------------------------------------------------------------ consensus_4217#0 CACCGGTAGAGCCATGGACGACATTAAGGAAAACCTTATCCCGAATCTGCATTTTGCGGA 360 consensus_4217#1 ------------------------------------------------------------ consensus_4217#0 GAACGATGAAGAGGAACTGGCGGAAGAAATTGGCCTCCCGGCACGTCCCACTATACCGTC 420 consensus_4217#1 ---------------------GGCAGAA--TCGCCACGAGGTATCATTTTCCACCTTTCC 37 ** **** * *** * ** * * * * consensus_4217#0 GCTGTTGCAAAGAAATTCCCAGATCAACCTGCTCGAAAAGATGGATCACAGTGGAGAGCA 480 consensus_4217#1 GCCACGCACATGAAGCTAC----TCGAGATTGCCGACTATATGGGCTTTA-TGAAGCGCA 92 ** * *** * * ** * * *** * **** * ** ** *** consensus_4217#0 GAACAAGCTAAATGAGTTGCGCAATCGCAAGG-GCACGGTTAGGATTAATCAACCCAAGG 539 consensus_4217#1 C--CAAATCCGGCATCATACGCAACTTCAACGTGGCCTGTTTGGATGAGTTTTTCT---- 146 *** * ***** *** * * * *** **** * * * consensus_4217#0 TGACGCGACAGGACAAGGCACGTCCGCCGGACGATG-AGCAGGAACCGTTCGGTGAAAGC 598 consensus_4217#1 CGATG----AAAACATGGCAC---TGGAGGACATTCTAACGCCTGCCGATCGGC-AAATC 198 ** * * *** ***** * **** * * * *** **** *** * consensus_4217#0 CTTATGCTGCTAGAGTTTGGTGAGAATGCACCAGTCGAGGCGATACAGTGGATTATGGAC 658 consensus_4217#1 ATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGACGAGCATCGGATACCGGGC 258 * * ** * * * * ** * * *** * ** **** ** * consensus_4217#0 AAGATCCGCGGTCGCCGGGTGGACGGCGGGATGGAATTGATGGTGCGCAAGGAACCTCTC 718 consensus_4217#1 ACAA----AGATCATC--CTATACCACGGC---CAATCAATCATAC---AGGCAGCACAG 306 * * * ** * * ** *** *** ** * * *** * * * consensus_4217#0 AGCAAAGATAGTAAAACGATCATTTTCCACCTTTCCGCCACGCACATGAAGCTACTCGAG 778 consensus_4217#1 AGTGCGGAATTGATCACGAACCTTTACTCGCTGCACGACAAGCGCACG---CTGAAGGAG 363 ** ** * **** * *** * ** ** ** ** ** * ** *** consensus_4217#0 ATTGCCGATCGGCAAATCATCGTCAAGCACGCGCTGGAAACGATCAAGGCGGCCGACGAC 838 consensus_4217#1 CTGCGCCATCGCTGGATCAAACCGACGCGCGTGC---AACCGATCGACGAGATACGGGAC 420 * * **** **** * ** ** ** ** ***** * * * *** consensus_4217#0 GAGCATCGGATACCGGGCACAAAGATCATCCTTTACCACGGCCAATCGATCATACAGGCG 898 consensus_4217#1 TA-CTTTGGCGAGAGTGT-CGGCCATGTACTTTTCCTTCCTTGGGTTTTACACGTACGCA 478 * * * ** * * * * ** * *** * * * ** * ** consensus_4217#0 GACAGAGTGCGGAATTTGTT--- 918 consensus_4217#1 CTGGTCGTGCCGACGGTGTTCGG 501 **** ** **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||