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Anopheles gambiae
cluster # 4218 cluster # 4218       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4218#0 length = 951 sequences # 2  
consensus_4218#1 length = 633 sequences # 1  

consensusID : consensus_4218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence
                              [AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAAGCCGGTCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGAGATAAACGAGTCGGCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATGGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGA-CTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGCAGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTATCAGGCCGATTCTTCGTCACAGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAACGCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTGGCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAATCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGCA]

[+] EMBL AL930495             [AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAAGCCGGTCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGAGATAAACGAGTCGGCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATGGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGA CTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGT                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX620613             [                                                                                                                                                                                                                      CTGGACCAGTACCTGCGGCTGCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAA GGACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGCTGGGCGACCTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGCAGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTATCAGGCCGATTCTTCGTCACAGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAACGCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTGGCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAATCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGCA]


>consensus_4218#0 AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGG ACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAAGCCGGTCG TGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGAGAT AAACGAGTCGGCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCTGCTGAC GAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCCGACGCT CGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGTCTACCAGCTGCACAA CTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATGGACATCT ACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATGCAGAAGC TGGGCGACTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACTCGTCGAA CGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCGAAACGGT TAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGCAGGACTC CTCCGATCAGATGCAGAACCAGCAGTTCTATCAGGCCGATTCTTCGTCACAGGGCGGGTT TGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAACGCTTTGCATT CTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTGGCTTTAGAAA CATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAATCAATAGAAG CATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGCA



consensusID : consensus_4218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTGCGAGACGCTGCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTGCTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTGGATTTGCAGACTCGACAGACGACGGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTTGTGCGAAAGCAGGAACCAATTTCTCTGGCCCGACAAAATCGCACGATGAAGCGTAACCACTGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGATCTCGTGCTGACGATGAGCAAGATGGACAAATTCCAGCAGATCAAGCTGCCGTACACCATCACCAGAGAGAAGCGCGTACCGCTAAAGAACCCGCTCGTCACGCAAACGGTGGAGGTCATGAAGCAGACCGAAATGATCCAAACGCTCATCGACACGTACTCCACCAAGTCGGGCTGCAACTACATACTGAACCCGTGCCAGCTGATGCCGACCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC]

[+] EMBL BM600393             [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTGCGAGACGCTGCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTGCTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTGGATTTGCAGACTCGACAGACGACGGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTTGTGCGAAAGCAGGAACCAATTTCTCTGGCCCGACAAAATCGCACGATGAAGCGTAACCACTGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGATCTCGTGCTGACGATGAGCAAGATGGACAAATTCCAGCAGATCAAGCTGCCGTACACCATCACCAGAGAGAAGCGCGTACCGCTAAAGAACCCGCTCGTCACGCAAACGGTGGAGGTCATGAAGCAGACCGAAATGATCCAAACGCTCATCGACACGTACTCCACCAAGTCGGGCTGCAACTACATACTGAACCCGTGCCAGCTGATGCCGACCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC]


>consensus_4218#1 CCGCGGACGCGTGGGCGGACGCGTGGGCCGTGCGAGACGCTGCAAAGAGATTATTGTAAC AAAACTTAATTATTTACTTGCTTGCTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTGGA TTTGCAGACTCGACAGACGACGGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGT ATCGTGTTGGTAGGTTGGTTTGTGCGAAAGCAGGAACCAATTTCTCTGGCCCGACAAAAT CGCACGATGAAGCGTAACCACTGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAG CTGGATGCGAACGATCTCGTGCTGACGATGAGCAAGATGGACAAATTCCAGCAGATCAAG CTGCCGTACACCATCACCAGAGAGAAGCGCGTACCGCTAAAGAACCCGCTCGTCACGCAA ACGGTGGAGGTCATGAAGCAGACCGAAATGATCCAAACGCTCATCGACACGTACTCCACC AAGTCGGGCTGCAACTACATACTGAACCCGTGCCAGCTGATGCCGACCGTCCACTTTCCC GCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTG CTGCCGGACGAGACGCCCTTTACGCGGGGCGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4218#0      AGAATTGCCCCGAGGTTNGGATGGAGAAGATCACGCGCCCGTTCTGGTTCGTGCTG-CCG 59
consensus_4218#1      ------------------------------CCGCGGACGCGTGGGCGGACGCGTGGGCCG 30
                                                     * **  * ***    *  ** *  * ***

consensus_4218#0      GACGAGACGCCCTTTACGCGGGGCGACCGGCGCAACTACGTGAAGCTGTCGAA--GCCGG 117
consensus_4218#1      TGCGAGACGCT------GCAAAGAGATTATTGTAACAAAACTTAATTATTTACTTGCTTG 84
                        ********       **   * **     * *** *     *  * *  *   **  *

consensus_4218#0      TCGTGCTGCAGGCGCTGCGGAAGGCGGCCTGCGGCTGCTGTGCATGGAGGGCTTCTCGGA 177
consensus_4218#1      CTTTTTCCTTTAGGTTACATTGGTAGGTGTGCTG--GATTTGCA-GACTCGACAGACGAC 141
                         *         * * *    *  **  *** *  * * **** *    *     **  

consensus_4218#0      GATAAACGAGTCG---GCGCTGATCATGATAGTGGACGGGCTGGACCAGTACCTGCGGCT 234
consensus_4218#1      GGTGAACGGTTTCAATGCGCTGCTCCTGGTAGGATTTGTATCGTGTTGGTAGGTTGGTTT 201
                      * * ****  *     ****** ** ** ***     *    *     ***  *  *  *

consensus_4218#0      GCTGACGAGCGCGCTCCGGTCGGCCCGGTCCGAGCAGGACGAGGAGATTGGGCCGGTGCC 294
consensus_4218#1      GTGCGAAAGCAGGAACCAATTTCTCTGGCCCGA-CAAAATCGCACGATGAAGC--GTAAC 258
                      *      ***  *  **  *    * ** **** **  *      ***   **  **  *

consensus_4218#0      GACGCTCGCGATGGTGCAGCGCATGTGCCACGGTATCGGGCGGGCCCCGGT-CTACCAGC 353
consensus_4218#1      CAC---TGGGGCAAGCTGGCGGACGGGTCGGACGACCGGAAGGAGCTGGATGCGAACGAT 315
                       **    * *        *** * * * *     * ***  **  *  * * * * *   

consensus_4218#0      TGCACAACTACTACAAAAAGCTGATGACCAAAAACCGGGACGAGGTGCGGGAGTTCAATG 413
consensus_4218#1      CTCGTGCTGACGATGAGCAA--GATGGACAAATTCCAGCAGATCAAGCTGCCGTACAC-- 371
                        *      ** *  *  *   ****  ****  ** * *      ** *  ** **   

consensus_4218#0      GACATCTACCAGGAGTACGACCGGCTGCTGCAGGAGAACCAGCTGTCGGTGCAGAACATG 473
consensus_4218#1      --CATC-ACCAGAGAGA--AGCGCGTACCGCTAAAGAACCCGC--TCGTCACGCAAACGG 424
                        **** *****    *  * **  * * **   ****** **  ***   *  **   *

consensus_4218#0      CAGAAGCTGGGCGACTGAAGGAGGAGGACTACATGAGCTTTCTCGATCCGCAGTCGCACT 533
consensus_4218#1      TGGAGGTCATGAAGCAGACCGAAATGATCCAAACG---CTCATCGACACGTACTCCACCA 481
                        ** *    *   * **  **   *  * * * *    *  ****  ** * **   * 

consensus_4218#0      CGTCGAACGGCACGACCATGGACGGGACGGCGATGAACATTATCAACTTCATCAACGGCG 593
consensus_4218#1      AGTCGGGCTGCA--ACTACATACTGAAC---------CCGTGCCAGCT-----GATGCCG 525
                       ****  * ***  ** *   ** * **         *  *  ** **      * * **

consensus_4218#0      AAACGGTTAATGGTTTCAAGGACATTCTCGAGGGTGAGCTGCTGGAGAACAGCAGCACGC 653
consensus_4218#1      A--CCGTCCACTTTCCCGCGAGCAACGTGGTCGACCTGACGCGGATGGAGAAGATCACGC 583
                      *  * **  *   *  *  *  **   * *  *    *  ** *  * * *  * *****

consensus_4218#0      AGGACTCCTCCGATCAGATGCAGAACCAGCAGTTCTAT---CAGGCCGATTCTTCGTCAC 710
consensus_4218#1      GCCCGTTCTGGTTCGTGCTGCCGGACGAGACGCCCTTTACGCGGGGCGAC---------- 633
                           * **       * *** * ** **  *  ** *   * ** ***           

consensus_4218#0      AGGGCGGGTTTGCCCCTTCCGGACCGATGTAGCAGTGCGCCGAGCAGCCGCCGCAGCAAC 770
consensus_4218#1      ------------------------------------------------------------
                                                                                  

consensus_4218#0      GCTTTGCATTCTAGAATGGCATTGGAAATAGAAAGAAGTAAGTGACGGGTAAAACGTGTG 830
consensus_4218#1      ------------------------------------------------------------
                                                                                  

consensus_4218#0      GCTTTAGAAACATACGAGCAGCTGGTTCTAAAATGCAGCTGCTGGAAGCAATCGAGCTAA 890
consensus_4218#1      ------------------------------------------------------------
                                                                                  

consensus_4218#0      TCAATAGAAGCATGGAGTCTGTATAGAAGTAAATTAGTTTCGCTTTTGCATNCCATTAGC 950
consensus_4218#1      ------------------------------------------------------------
                                                                                  

consensus_4218#0      A 951
consensus_4218#1      -
                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)