These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence [CAGAATCGGCACGAGGTTTAAGGACGACGAGGAACGATCGTCCCAGCTGTTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATTGACGATTCACTTGATCGAGGATTGAAAGATCGGGCAAAGGGCGGAAAGCGGCGGACTATTCGCGGCCGCCGGCTGGCCGACCGGAGGCCACAAGAAAGGCCTTGCGCGGACGACCTTGGCCGGGGACATTTCGGCGAAAGGCGAGGAAAAACCAGGAGGGGGCCGGTTTCGCTTGCGGAAGCTGCGGCCGATTCGCGATCGCTCGGGAAAAGCCCCGTTTCGTGGGTGCAGGGACGATGAGCCCGAGCGAGGAANAATGAAACGAAAGGCTACTCGGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAAGTGCGATCATTGCTGANATCGGAATGATCTGTTCGCCGGCTGCGGCCAGGCCTGCTGATGCGGGAAAGCAGTTTCATTCATCGAGACGGGGGATTGGACCGAAAGCGATT] [+] EMBL BX468633 [CAGAATCGGCACGAGGTTTAAGGACGACGAGGAACGATCGTCCCAGCTGTTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATTGACGATTCACTTGATCGAGGATTGAAAGATCGGGCAAAGGGCGGAAAGCGGCGGACTATTCGCGGCCGCCGGCTGGCCGACCGGAGGCCACAAGAAAGGCCTTGCGCGGACGACCTTGGCCGGGGACATTTCGGCGAAAGGCGAGGAAAAACCAGGAGGGGGCCGGTTTCGCTTGCGGAAGCTGCGGCCGATTCGCGATCGCTCGGGAAAAGCCCCGTTTCGTGGGTGCAGGGACGATGAGCCCGAGCGAGGAANAATGAAACGAAAGGCTACTCGGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAAGTGCGATCATTGCTGANATCGGAATGATCTGTTCGCCGGCTGCGGCCAGGCCTGCTGATGCGGGAAAGCAGTTTCATTCATCGAGACGGGGGATTGGACCGAAAGCGATT] consensusID : consensus_4221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 764 fasta sequence [AGGACGACGAGGAACCGATCGTCCAGCTGTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATGACGATTCACTGATCGAGATGAAGATCGGCAAGGCGAAGCGCGACTATTCGCGGCGCCGGCTGGCCGACGAGGCACAGAAGCTGCGCGACGACCTGGCGGGACATTCGCGAAGCGAGGAAACAGAGGGCCGTTCGCTGCGGAAGCTGCGCGATCGCGATCGCTCGGAAAGCCCGTTCGTGGTGCAGGACGATGAGCCGAGCGAGAAAATGAAACGAAGCTACTCGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAATGCGATCATGCTGAATCGGAATGATCTCTGTTCGCCGGCTGCGGNCAGCCTGCTGATGCGGGAAAGCAGTTCCATCATCCAG] [+] EMBL BX629297 [AGGACGACGAGGAACCGATCGTCCAGCTGTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATGACGATTCACTGATCGAGATGAAGATCGGCAAGGCGAAGCGCGACTATTCGCGGCGCCGGCTGGCCGACGAGGCACAGAAGCTGCGCGACGACCTGGCGGGACATTCGCGAAGCGAGGAAACAGAGGGCCGTTCGCTGCGGAAGCTGCGCGATCGCGATCGCTCGGAAAGCCCGTTCGTGGTGCAGGACGATGAGCCGAGCGAGAAAATGAAACGAAGCTACTCGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAATGCGATCATGCTGAATCGGAATGATCTCTGTTCGCCGGCTGCGGNCAGCCTGCTGATGCGGGAAAGCAG ] [+] EMBL BX629190 [ GGAACCGATCGTCCAGCTGTCGACCAGGAAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACGATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGATGATCCCGTGCTGACGGTGACGGATACCGATGACGATTCACTGATCGAGATGAAGATCGGCAAGGCGAAGCGCGACTATTCGCGGCGCCGGCTGGCCGACGAGGCACAGAAGCTGCGCGACGACCTGGCGGGACATTCGCGAAGCGAGGAAACAGAGGGCCGTTCGCTGCGGAAGCTGCGCGATCGCGATCGCTCGGAAAGCCCGTTCGTGGTGCAGGACGATGAGCCGAGCGAGAAAATGAAACGAAGCTACTCGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATCGGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGAAGAACGCGGCTGCGTTCCAGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTACCGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGAGAACGGGAACATTCGGACGACGGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAATGCGATCATGCTGAATCGGAATGATCTCTGTTCGCCGGCTGCGGNCAGCCTGCTGATGCGGGAAAGCAGTTCCATCATCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4221#0 CAGAATCGGCACGAGGTTTAAGGACGACGAGGAAC-GATCGTCCCAGCTGTTCGACCAGG 59 consensus_4221#1 --------------------AGGACGACGAGGAACCGATCGTCC-AGCTGT-CGACCAGG 38 *************** ******** ****** ******** consensus_4221#0 AAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACG 119 consensus_4221#1 AAGGCCAAAGAGGAGAAACACGTATCGGAGGATGAGGTGTTTGTCGATGCGCAAGAAACG 98 ************************************************************ consensus_4221#0 ATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGAT 179 consensus_4221#1 ATCGAGGAACCGGAGGAGGTGAAAGAAGTGGAGCCCCCGGTGAAAAAACCGCCCGCTGAT 158 ************************************************************ consensus_4221#0 GATCCCGTGCTGACGGTGACGGATACCGATTGACGATTCACTTGATCGAGGATTGAAAGA 239 consensus_4221#1 GATCCCGTGCTGACGGTGACGGATACCGAT-GACGATTCACT-GATCGAGA---TGAAGA 213 ****************************** *********** ******* **** consensus_4221#0 TCGGGCAAAGGGCGGAAAGCGGCGGACTATTCGCGGCCGCCGGCTGGCCGACCGGAGGCC 299 consensus_4221#1 TCGGC---AAGGCGAAGCGCG----ACTATTCGCGGC-GCCGGCTGGCCGAC--GAGGC- 262 **** * **** * *** ************ ************** ***** consensus_4221#0 ACAAGAAAGGCCTTGCGCGGACGACCTTGGCCGGGGACATTTCGGCGAAAGGCGAGGAAA 359 consensus_4221#1 ACAGAAG-----CTGCGCG-ACGACCT-GGC--GGGACATT----CGCGAAGCGAGGAAA 309 *** * ****** ******* *** ******** ** * ********* consensus_4221#0 AACCAGGAGGGGGCCGGTTTCGCTTGCGGAAGCTGCGGCCGATTCGCGATCGCTCGGGAA 419 consensus_4221#1 ------CAGAGGGCCG--TTCGCT-GCGGAAGCTGCG--CGAT-CGCGATCGCTCGGAAA 357 ** ****** ****** ************ **** ************* ** consensus_4221#0 AAGCCCCGTTTCGTGGGTGCAGGGACGATGAGCCCGAGCGAGGAANAATGAAACGAAAGG 479 consensus_4221#1 G---CCCGTT-CGTGG-TGCAGG-ACGATGAGCC-GAGCGAG--AAAATGAAACGAA--G 406 ****** ***** ****** ********** ******* * *********** * consensus_4221#0 CTACTCGGTCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATC 539 consensus_4221#1 CTACTCG-TCCACGCCGGTGATGGACTCGATACCGGGTTCGCCCGCCTCGAGCGAGGATC 465 ******* **************************************************** consensus_4221#0 GGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGA 599 consensus_4221#1 GGGACTACCGGGTGTGGAAGAAGTCTATACTGGCGGTTTACTCGAAGATCGCGTCGTCGA 525 ************************************************************ consensus_4221#0 AGAACGCGGCTGCGTTCCAGGAAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTAC 659 consensus_4221#1 AGAACGCGGCTGCGTTCCAG-AAACCACTGCCAGAGGATCAAACGGCGCACCTGATCTAC 584 ******************** *************************************** consensus_4221#0 CGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCGGAGAACGGGAACATTCGGACGAC 719 consensus_4221#1 CGGCCGATGGATTTGCCGCAGATCAAGCGCAACATCG-AGAACGGGAACATTCGGACGAC 643 ************************************* ********************** consensus_4221#0 GGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAAGTGCGATCATTGCTGANATCG 779 consensus_4221#1 GGCCGAGTTTCAGCGCGACTTGCTGCTCATGTGCACCAA-TGCGATCAT-GCTGAA-TCG 700 *************************************** ********* ***** *** consensus_4221#0 GAATGATCT--GTTCGCCGGCTGCGGCCAGGCCTGCTGATGCGGGAAAGCAGTTTCATTC 837 consensus_4221#1 GAATGATCTCTGTTCGCCGGCTGCGGNCAG-CCTGCTGATGCGGGAAAGCAGTTCCAT-C 758 ********* *************** *** *********************** *** * consensus_4221#0 ATCGAGACGGGGGATTGGACCGAAAGCGATT 868 consensus_4221#1 ATCCAG------------------------- 764 *** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||