These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [CCGCATTTTAGAAAATCAAAACAGTGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATGA] [+] EMBL BM589539 [CCGCATTTTAGAAAATCAAAACAGTGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATGA] [+] EMBL BM596974 [ ccgGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCGTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGACGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAATTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTC ] consensusID : consensus_4232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATG] [+] EMBL BM596505 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4232#0 CCGCATTTTAGAAAATCAAAACAGTGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAA 60 consensus_4232#1 -------------CCGCGGACGCGTGGGCGGAC-GCGTGGGCGCGTGAAAGCGCACAAAA 46 * * *** * * *** ******************** consensus_4232#0 CGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCC 120 consensus_4232#1 CGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCC 106 ************************************************************ consensus_4232#0 GTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGT 180 consensus_4232#1 GTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGT 166 ************************************************************ consensus_4232#0 ACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAA 240 consensus_4232#1 ACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAA 226 ************************************************************ consensus_4232#0 AAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTG 300 consensus_4232#1 AAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTG 286 ************************************************************ consensus_4232#0 CCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCG 360 consensus_4232#1 CCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCG 346 ************************************************************ consensus_4232#0 CGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGG 420 consensus_4232#1 CGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGG 406 ************************************************************ consensus_4232#0 CGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAA 480 consensus_4232#1 CGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAA 466 ************************************************************ consensus_4232#0 GAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAAC 540 consensus_4232#1 GAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAAC 526 ************************************************************ consensus_4232#0 TGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAG 600 consensus_4232#1 TGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAG 586 ************************************************************ consensus_4232#0 CACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATT 660 consensus_4232#1 CACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATT 646 ************************************************************ consensus_4232#0 GTATCCTCCAACAATGA 677 consensus_4232#1 GTATCCTCCAACAATG- 662 **************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||