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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 780 fasta sequence
[GGCAGAATCGGCACGNGGGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGTGTGAGATGAAGTTTAGCAAGCGGGCCGTGATTTGTATGCGCGATGGTCGGTTGTGCCTCGTGTTTCGTGTGTGTGACCACAAGCAGCAGCACGTGATAGGGACGCAAATAACGGCCACCATGCTCGAACCAAAGCGCCACGCTGGTTCGAACGTGATCGAACGCTACGAAACACGCCTCCGACTGCAAAACAACGGGCGTGTCTTACCCCTGTGGCCCATTACCGTCTGTCACGTGATCGATCGGTACAGCCCGCTGTACGACACTTCGGCGGCGGATCTGCTTGACCGGCGGTTCGAAATCGTGATCACAATGACGGGCAGTACGATGACTACGGGGCAGAGCACGCAGGCCCGCGACCTCCGTATATACCGGTGGAAATTCTGTGGGGACATCGGTTTCAGAACATCATCGAGTACGATCCGAAGCGAGAGTGTTATGTGGCGATGAACGAGCAGCTTCGATCTGCCTGGAGGAGGTCGACGAGCACCGCGTCTGCAGTGCACGCCAGCTGGAAGGGCAGGTGTTCGATGAGCTGCAAAAACGAAGGCACCATCCGGGGGTGCCCGATTGATGATCCTT]
[+] EMBL BX468455 [GGCAGAATCGGCACGNGGGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGTGTGAGATGAAGTTTAGCAAGCGGGCCGTGATTTGTATGCGCGATGGTCGGTTGTGCCTCGTGTTTCGTGTGTGTGACCACAAGCAGCAGCACGTGATAGGGACGCAAATAACGGCCACCATGCTCGAACCAAAGCGCCACGCTGGTTCGAACGTGATCGAACGCTACGAAACACGCCTCCGACTGCAAAACAACGGGCGTGTCTTACCCCTGTGGCCCATTACCGTCTGTCACGTGATCGATCGGTACAGCCCGCTGTACGACACTTCGGCGGCGGATCTGCTTGACCGGCGGTTCGAAATCGTGATCACAATGACGGGCAGTACGATGACTACGGGGCAGAGCACGCAGGCCCGCGACCTCCGTATATACCGGTGGAAATTCTGTGGGGACATCGGTTTCAGAACATCATCGAGTACGATCCGAAGCGAGAGTGTTATGTGGCGATGAACGAGCAGCTTCGATCTGCCTGGAGGAGGTCGACGAGCACCGCGTCTGCAGTGCACGCCAGCTGGAAGGGCAGGTGTTCGATGAGCTGCAAAAACGAAGGCACCATCCGGGGGTGCCCGATTGATGATCCTT]
consensusID : consensus_4241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[CGAGGGTGTGTGCGGTGTTGTAGCTTCATGTGCCACTTAAACGAACGATCTTTTCGACTCCTAAACCAATCTAATCTACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAACAAAAAGGGCGAAGGGAACGTTCATCTGGCCCATCTGCCGCAACGGTCGCTTCGATACGTGCGCGACATTGCCACCACGTTGGTGGACGAACAATGGCGCTACACGCTGATGCTGTTTGTGCTGAGCTTCGTTGCGAGTTGGATCTTCTTCGCGGTCCTGTGGTATCTAATCGCGTACGCGCACGGTGACCTGCTCAAGGATCCCACCACGGGCGAACGGCTCGGCGATGGCAACAAACCGTGCGTCGAAGGAACGACCAGCTTCACAGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGT]
[+] EMBL BX628162 [CGAGGGTGTGTGCGGTGTTGTAGCTTCATGTGCCACTTAAACGAACGATCTTTTCGACTCCTAAACCAATCTAATCTACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAACAAAAAGGGCGAAGGGAACGTTCATCTGGCCCATCTGCCGCAACGGTCGCTTCGATACGTGCGCGACATTGCCACCACGTTGGTGGACGAACAATGGCGCTACACGCTGATGCTGTTTGTGCTGAGCTTCGTTGCGAGTTGGATCTTCTTCGCGGTCCTGTGGTATCTAATCGCGTACGCGCACGGTGACCTGCTCAAGGATCCCACCACGGGCGAACGGCTCGGCGATGGCAACAAACCGTGCGTCGAAGGAACGACCAGCTTCACAGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGT]
consensusID : consensus_4241#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[CCGGTGAACTGCACGCGCGCGGTACTGCTCTCTTTGCTGTCTGTCTCGAATTTTAGTGACCTACTACTTACTAGCCATATTTTGTGACCATCCACAATCAGTTAACAATGAGCCTCGACAGTCTGGATTCGCTCACCGGAAGTCCGTATTCTGCGCGAAAAAACTGGCTCAAAGGACAGGAACATCAGCAACACATCGAATATCGATTCTCCAGACCGATCAAGATTGTGGACTACGATAAGGAGCGATATTCCTGGTCAGCGCCCGGTAGTCCTTATCACATACGTCGACCGGCCTTCGATCGAAATAGACTATGGATAGAAGACGATACGAGTTCGGAGTCAGAAATCGATCGAAAACAACATCACATCATTAACGATCTCGGAACGGAAGATGCCTTCAGCAATTCGGATCAGCCTGCATCGATGCTCAATGCGGAAACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAAC]
[+] EMBL BM638789 [CCGGTGAACTGCACGCGCGCGGTACTGCTCTCTTTGCTGTCTGTCTCGAATTTTAGTGACCTACTACTTACTAGCCATATTTTGTGACCATCCACAATCAGTTAACAATGAGCCTCGACAGTCTGGATTCGCTCACCGGAAGTCCGTATTCTGCGCGAAAAAACTGGCTCAAAGGACAGGAACATCAGCAACACATCGAATATCGATTCTCCAGACCGATCAAGATTGTGGACTACGATAAGGAGCGATATTCCTGGTCAGCGCCCGGTAGTCCTTATCACATACGTCGACCGGCCTTCGATCGAAATAGACTATGGATAGAAGACGATACGAGTTCGGAGTCAGAAATCGATCGAAAACAACATCACATCATTAACGATCTCGGAACGGAAGATGCCTTCAGCAATTCGGATCAGCCTGCATCGATGCTCAATGCGGAAACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4241#0 GGCAGAATCGGCACGNGGGGCTTTC-TCCT-GTTCAGTGTGGAAACGCAGGTCTCCACCG 58
consensus_4241#1 ---CGAGGGTGTGTGCGGTGTTGTA-GCTTCATGTGCCACTTAAACGAACGATCTTTTCG 56
consensus_4241#2 ------------CCGGTGAACTGCACGCGCGCGGTACTGCTCTCTTTGCTGTCTGTCTCG 48
* * * * * **
consensus_4241#0 GGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATAC 118
consensus_4241#1 ACTCCTA---AACCAATCTAATCTACAGACA--CAGAACCAAAGTTTCCAATCACGATAC 111
consensus_4241#2 AATTTTA-----GTGACCTA--CTACTTACT-----AGCCATATTTTGTGACCATC-CAC 95
* * * * * * * *** **
consensus_4241#0 AGATCGTCTTCGGACTTGTGA----TCGGA---GGCGCGATGGTGGGTGTTGTGTACGCG 171
consensus_4241#1 GAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGA-ACC 170
consensus_4241#2 AATCAGTTAACAATGAGCCTCG---ACAGTCTGGATTCGCTCACCGGAAGTCCGTATTCT 152
* * * * * * * * * * *
consensus_4241#0 AAAATGATTCGCCTTCCGAAGCGATCGTGTGAGATGAAGTTTAGCAAGCGGGC-CGTGAT 230
consensus_4241#1 AGAGCAATAAAGGCGC-GACGTGTCATCAACAAAAAGGGCGAAGGGAACGTTCATCTGGC 229
consensus_4241#2 GCGCGAAAAAACTGGCTCAAAGGACAGGAACATCAGCAACACATCGAATATCGATTCTCC 212
* * * * * * *
consensus_4241#0 TTGTATGC-GCGATGGTCGGTTGTGCCTCGTGTTTCGTGTGTGTGACCACAAGCAGCAGC 289
consensus_4241#1 CCATCTGCCGCAACGGTCGCTT-CGATACGTGCGCGACAT-TGCCACCAC--GTTGGTGG 285
consensus_4241#2 AGACCGATCAAGATTGTGGACTACGATAAG-GAGCGATATTCCTGGTCAGCGCCCGGTAG 271
* ** * * * * * * ** *
consensus_4241#0 ACGTGATAGGGACGCAAATAACGGCCACCATGCTCGAACCAAAGCGCCACGCTGGTTCGA 349
consensus_4241#1 ACG-AACAATGGCGCTAC--ACGCTGATGCTGTTTGTGCTGAGCTTCGTTGCGAGTTGGA 342
consensus_4241#2 TCC--------TTATCACATACGTCGACCGGCCTTCGATCGAAATAGACTATGGATAGAA 323
* * *** * * * * *
consensus_4241#0 ACGTGATCGAACGCTACGAAACACGCCTCCGACTGCAAAACAACGGGCGTGTCTTACCCC 409
consensus_4241#1 TCTTCTTCG--CGGTCCTGTG---GTATCTAATCGCGTACGCGCACG-GTGACCTGCTCA 396
consensus_4241#2 GACGATACG---AGTTCGGAGTCAGAAATCGATCGAAAACA---ACA--TCACATCATTA 375
** * * * * * * * * *
consensus_4241#0 TGTGGCCCATTACCGTCTGTCACGTGATCGATCGGTACAGCCCGCTGTACGACACTTCGG 469
consensus_4241#1 AGGATCCCACCACGGGCGAACGGCTCGGCGATGG---CAACAAACCGTGCGTCG----AA 449
consensus_4241#2 ACGATCTCGGAACGGAAGATGCCTTCAGCAATT----CGGATCAGCCTGCATCGAT--GC 429
* * ** * * * ** * * * *
consensus_4241#0 CGGCGGATCTGCTTGACCGGCGGTTCGAAATCGTGATCACAATGACGGGCAGTACGATGA 529
consensus_4241#1 GGAACGACCAGCTTCACAGGCTTTC-----TCCTGTTCA--GTGTGGAAACGCA-GGTCT 501
consensus_4241#2 TCAATGCGGAAACAGACACAGAACCAAAGTTTCCAATCA------CGATACGAA--GTGC 481
* ** * *** * * * *
consensus_4241#0 CTACGGGGCAGAGCACGCAGGCCCGCGACCTCCGTATATACCGGTGGAAATTCTGTGGGG 589
consensus_4241#1 CCACCGGGTACGGTGTGATCGTCC-CAACCGAGGAGTGTCCAGAAGCGTTCTTTCT---- 556
consensus_4241#2 CCGCAGTCTGCAGAGTCTTCGGATGCGAC---GAGATCCTCAGCATCAAGGAACCAGAGC 538
* * * * * * ** * * *
consensus_4241#0 ACATCGGTTTCAGAACATCATCGAG--TACGATCCGAAGCGAGAGTGTTATGTGGCGATG 647
consensus_4241#1 ACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGA-TGGTGGGTGTTG-TG 614
consensus_4241#2 AATAAAGGCGCGACGTGTCATCAAC----------------------------------- 563
* * ** **
consensus_4241#0 AACGAGCAGCTTCGATCTGCCTG--GAGGAGGTCGACGAGCACCGCGTCTGCAGTGCACG 705
consensus_4241#1 TACGCGAAAAT--GATTCGCCTTCCGAAGCGATCGT------------------------ 648
consensus_4241#2 ------------------------------------------------------------
consensus_4241#0 CCAGCTGGAAGGGCAGGTGTTCGATGAGCTGCAAAAACGAAGGCACCATCCGGGGGTGCC 765
consensus_4241#1 ------------------------------------------------------------
consensus_4241#2 ------------------------------------------------------------
consensus_4241#0 CGATTGATGATCCTT 780
consensus_4241#1 ---------------
consensus_4241#2 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||