These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 780 fasta sequence [GGCAGAATCGGCACGNGGGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGTGTGAGATGAAGTTTAGCAAGCGGGCCGTGATTTGTATGCGCGATGGTCGGTTGTGCCTCGTGTTTCGTGTGTGTGACCACAAGCAGCAGCACGTGATAGGGACGCAAATAACGGCCACCATGCTCGAACCAAAGCGCCACGCTGGTTCGAACGTGATCGAACGCTACGAAACACGCCTCCGACTGCAAAACAACGGGCGTGTCTTACCCCTGTGGCCCATTACCGTCTGTCACGTGATCGATCGGTACAGCCCGCTGTACGACACTTCGGCGGCGGATCTGCTTGACCGGCGGTTCGAAATCGTGATCACAATGACGGGCAGTACGATGACTACGGGGCAGAGCACGCAGGCCCGCGACCTCCGTATATACCGGTGGAAATTCTGTGGGGACATCGGTTTCAGAACATCATCGAGTACGATCCGAAGCGAGAGTGTTATGTGGCGATGAACGAGCAGCTTCGATCTGCCTGGAGGAGGTCGACGAGCACCGCGTCTGCAGTGCACGCCAGCTGGAAGGGCAGGTGTTCGATGAGCTGCAAAAACGAAGGCACCATCCGGGGGTGCCCGATTGATGATCCTT] [+] EMBL BX468455 [GGCAGAATCGGCACGNGGGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGTGTGAGATGAAGTTTAGCAAGCGGGCCGTGATTTGTATGCGCGATGGTCGGTTGTGCCTCGTGTTTCGTGTGTGTGACCACAAGCAGCAGCACGTGATAGGGACGCAAATAACGGCCACCATGCTCGAACCAAAGCGCCACGCTGGTTCGAACGTGATCGAACGCTACGAAACACGCCTCCGACTGCAAAACAACGGGCGTGTCTTACCCCTGTGGCCCATTACCGTCTGTCACGTGATCGATCGGTACAGCCCGCTGTACGACACTTCGGCGGCGGATCTGCTTGACCGGCGGTTCGAAATCGTGATCACAATGACGGGCAGTACGATGACTACGGGGCAGAGCACGCAGGCCCGCGACCTCCGTATATACCGGTGGAAATTCTGTGGGGACATCGGTTTCAGAACATCATCGAGTACGATCCGAAGCGAGAGTGTTATGTGGCGATGAACGAGCAGCTTCGATCTGCCTGGAGGAGGTCGACGAGCACCGCGTCTGCAGTGCACGCCAGCTGGAAGGGCAGGTGTTCGATGAGCTGCAAAAACGAAGGCACCATCCGGGGGTGCCCGATTGATGATCCTT] consensusID : consensus_4241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CGAGGGTGTGTGCGGTGTTGTAGCTTCATGTGCCACTTAAACGAACGATCTTTTCGACTCCTAAACCAATCTAATCTACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAACAAAAAGGGCGAAGGGAACGTTCATCTGGCCCATCTGCCGCAACGGTCGCTTCGATACGTGCGCGACATTGCCACCACGTTGGTGGACGAACAATGGCGCTACACGCTGATGCTGTTTGTGCTGAGCTTCGTTGCGAGTTGGATCTTCTTCGCGGTCCTGTGGTATCTAATCGCGTACGCGCACGGTGACCTGCTCAAGGATCCCACCACGGGCGAACGGCTCGGCGATGGCAACAAACCGTGCGTCGAAGGAACGACCAGCTTCACAGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGT] [+] EMBL BX628162 [CGAGGGTGTGTGCGGTGTTGTAGCTTCATGTGCCACTTAAACGAACGATCTTTTCGACTCCTAAACCAATCTAATCTACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAACAAAAAGGGCGAAGGGAACGTTCATCTGGCCCATCTGCCGCAACGGTCGCTTCGATACGTGCGCGACATTGCCACCACGTTGGTGGACGAACAATGGCGCTACACGCTGATGCTGTTTGTGCTGAGCTTCGTTGCGAGTTGGATCTTCTTCGCGGTCCTGTGGTATCTAATCGCGTACGCGCACGGTGACCTGCTCAAGGATCCCACCACGGGCGAACGGCTCGGCGATGGCAACAAACCGTGCGTCGAAGGAACGACCAGCTTCACAGGCTTTCTCCTGTTCAGTGTGGAAACGCAGGTCTCCACCGGGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGATGGTGGGTGTTGTGTACGCGAAAATGATTCGCCTTCCGAAGCGATCGT] consensusID : consensus_4241#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [CCGGTGAACTGCACGCGCGCGGTACTGCTCTCTTTGCTGTCTGTCTCGAATTTTAGTGACCTACTACTTACTAGCCATATTTTGTGACCATCCACAATCAGTTAACAATGAGCCTCGACAGTCTGGATTCGCTCACCGGAAGTCCGTATTCTGCGCGAAAAAACTGGCTCAAAGGACAGGAACATCAGCAACACATCGAATATCGATTCTCCAGACCGATCAAGATTGTGGACTACGATAAGGAGCGATATTCCTGGTCAGCGCCCGGTAGTCCTTATCACATACGTCGACCGGCCTTCGATCGAAATAGACTATGGATAGAAGACGATACGAGTTCGGAGTCAGAAATCGATCGAAAACAACATCACATCATTAACGATCTCGGAACGGAAGATGCCTTCAGCAATTCGGATCAGCCTGCATCGATGCTCAATGCGGAAACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAAC] [+] EMBL BM638789 [CCGGTGAACTGCACGCGCGCGGTACTGCTCTCTTTGCTGTCTGTCTCGAATTTTAGTGACCTACTACTTACTAGCCATATTTTGTGACCATCCACAATCAGTTAACAATGAGCCTCGACAGTCTGGATTCGCTCACCGGAAGTCCGTATTCTGCGCGAAAAAACTGGCTCAAAGGACAGGAACATCAGCAACACATCGAATATCGATTCTCCAGACCGATCAAGATTGTGGACTACGATAAGGAGCGATATTCCTGGTCAGCGCCCGGTAGTCCTTATCACATACGTCGACCGGCCTTCGATCGAAATAGACTATGGATAGAAGACGATACGAGTTCGGAGTCAGAAATCGATCGAAAACAACATCACATCATTAACGATCTCGGAACGGAAGATGCCTTCAGCAATTCGGATCAGCCTGCATCGATGCTCAATGCGGAAACAGACACAGAACCAAAGTTTCCAATCACGATACGAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGAACCAGAGCAATAAAGGCGCGACGTGTCATCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4241#0 GGCAGAATCGGCACGNGGGGCTTTC-TCCT-GTTCAGTGTGGAAACGCAGGTCTCCACCG 58 consensus_4241#1 ---CGAGGGTGTGTGCGGTGTTGTA-GCTTCATGTGCCACTTAAACGAACGATCTTTTCG 56 consensus_4241#2 ------------CCGGTGAACTGCACGCGCGCGGTACTGCTCTCTTTGCTGTCTGTCTCG 48 * * * * * ** consensus_4241#0 GGTACGGTGTGATCGTCCCAACCGAGGAGTGTCCAGAAGCGTTCTTTCTACTGCTAATAC 118 consensus_4241#1 ACTCCTA---AACCAATCTAATCTACAGACA--CAGAACCAAAGTTTCCAATCACGATAC 111 consensus_4241#2 AATTTTA-----GTGACCTA--CTACTTACT-----AGCCATATTTTGTGACCATC-CAC 95 * * * * * * * *** ** consensus_4241#0 AGATCGTCTTCGGACTTGTGA----TCGGA---GGCGCGATGGTGGGTGTTGTGTACGCG 171 consensus_4241#1 GAAGTGCCCGCAGTCTGCAGAGTCTTCGGATGCGACGAGATCCTCAGCATCAAGGA-ACC 170 consensus_4241#2 AATCAGTTAACAATGAGCCTCG---ACAGTCTGGATTCGCTCACCGGAAGTCCGTATTCT 152 * * * * * * * * * * * consensus_4241#0 AAAATGATTCGCCTTCCGAAGCGATCGTGTGAGATGAAGTTTAGCAAGCGGGC-CGTGAT 230 consensus_4241#1 AGAGCAATAAAGGCGC-GACGTGTCATCAACAAAAAGGGCGAAGGGAACGTTCATCTGGC 229 consensus_4241#2 GCGCGAAAAAACTGGCTCAAAGGACAGGAACATCAGCAACACATCGAATATCGATTCTCC 212 * * * * * * * consensus_4241#0 TTGTATGC-GCGATGGTCGGTTGTGCCTCGTGTTTCGTGTGTGTGACCACAAGCAGCAGC 289 consensus_4241#1 CCATCTGCCGCAACGGTCGCTT-CGATACGTGCGCGACAT-TGCCACCAC--GTTGGTGG 285 consensus_4241#2 AGACCGATCAAGATTGTGGACTACGATAAG-GAGCGATATTCCTGGTCAGCGCCCGGTAG 271 * ** * * * * * * ** * consensus_4241#0 ACGTGATAGGGACGCAAATAACGGCCACCATGCTCGAACCAAAGCGCCACGCTGGTTCGA 349 consensus_4241#1 ACG-AACAATGGCGCTAC--ACGCTGATGCTGTTTGTGCTGAGCTTCGTTGCGAGTTGGA 342 consensus_4241#2 TCC--------TTATCACATACGTCGACCGGCCTTCGATCGAAATAGACTATGGATAGAA 323 * * *** * * * * * consensus_4241#0 ACGTGATCGAACGCTACGAAACACGCCTCCGACTGCAAAACAACGGGCGTGTCTTACCCC 409 consensus_4241#1 TCTTCTTCG--CGGTCCTGTG---GTATCTAATCGCGTACGCGCACG-GTGACCTGCTCA 396 consensus_4241#2 GACGATACG---AGTTCGGAGTCAGAAATCGATCGAAAACA---ACA--TCACATCATTA 375 ** * * * * * * * * * consensus_4241#0 TGTGGCCCATTACCGTCTGTCACGTGATCGATCGGTACAGCCCGCTGTACGACACTTCGG 469 consensus_4241#1 AGGATCCCACCACGGGCGAACGGCTCGGCGATGG---CAACAAACCGTGCGTCG----AA 449 consensus_4241#2 ACGATCTCGGAACGGAAGATGCCTTCAGCAATT----CGGATCAGCCTGCATCGAT--GC 429 * * ** * * * ** * * * * consensus_4241#0 CGGCGGATCTGCTTGACCGGCGGTTCGAAATCGTGATCACAATGACGGGCAGTACGATGA 529 consensus_4241#1 GGAACGACCAGCTTCACAGGCTTTC-----TCCTGTTCA--GTGTGGAAACGCA-GGTCT 501 consensus_4241#2 TCAATGCGGAAACAGACACAGAACCAAAGTTTCCAATCA------CGATACGAA--GTGC 481 * ** * *** * * * * consensus_4241#0 CTACGGGGCAGAGCACGCAGGCCCGCGACCTCCGTATATACCGGTGGAAATTCTGTGGGG 589 consensus_4241#1 CCACCGGGTACGGTGTGATCGTCC-CAACCGAGGAGTGTCCAGAAGCGTTCTTTCT---- 556 consensus_4241#2 CCGCAGTCTGCAGAGTCTTCGGATGCGAC---GAGATCCTCAGCATCAAGGAACCAGAGC 538 * * * * * * ** * * * consensus_4241#0 ACATCGGTTTCAGAACATCATCGAG--TACGATCCGAAGCGAGAGTGTTATGTGGCGATG 647 consensus_4241#1 ACTGCTAATACAGATCGTCTTCGGACTTGTGATCGGAGGCGCGA-TGGTGGGTGTTG-TG 614 consensus_4241#2 AATAAAGGCGCGACGTGTCATCAAC----------------------------------- 563 * * ** ** consensus_4241#0 AACGAGCAGCTTCGATCTGCCTG--GAGGAGGTCGACGAGCACCGCGTCTGCAGTGCACG 705 consensus_4241#1 TACGCGAAAAT--GATTCGCCTTCCGAAGCGATCGT------------------------ 648 consensus_4241#2 ------------------------------------------------------------ consensus_4241#0 CCAGCTGGAAGGGCAGGTGTTCGATGAGCTGCAAAAACGAAGGCACCATCCGGGGGTGCC 765 consensus_4241#1 ------------------------------------------------------------ consensus_4241#2 ------------------------------------------------------------ consensus_4241#0 CGATTGATGATCCTT 780 consensus_4241#1 --------------- consensus_4241#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||