These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGAGCATGCTTCACATTTTGCAGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCTGTGTGTTACTTTTATGCTTTATTTCGCCTATCTACGTATATGCTTGTGGCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCATCAGACGCAATCCCCTAACGAACTGAGCGTTATTATTGTATTTAAAAAAATGATATCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGAGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAAGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCTAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAATCGACGTGTTTTCTCGTTTCTTAAAATGAAACAGTTCGAAAGTGCTTCAACACGTTCAATACAGCAATGTACATCAGTTTTG] [+] EMBL BM588121 [CCGAGCATGCTTCACATTTTGCAGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCTGTGTGTTACTTTTATGCTTTATTTCGCCTATCTACGTATATGCTTGTGGCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCATCAGACGCAATCCCCTAACGAACTGAGCGTTATTATTGTATTTAAAAAAATGATATCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGAGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAAGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCTAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAATCGACGTGTTTTCTCGTTTCTTAAAATGAAACAGTTCGAAAGTGCTTCAACACGTTCAATACAGCAATGTACATCAGTTTTG] consensusID : consensus_4245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [ATCGCCCCGAGGGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAA] [+] EMBL AL932599 [ATCGCCCCGAGGGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAA] consensusID : consensus_4245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [CCACGCGTCCGCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACTTTCTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGTTTTGCCCCCCCCGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGTCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT] [+] EMBL BM634882 [CCACGCGTCCGCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACTTTCTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGTTTTGCCCCCCCCGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGTCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4245#0 CCGAGCATGCTTCACATTTTGCAGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAA 60 consensus_4245#1 ----------ATCGC-CCCGAGGGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAA 49 consensus_4245#2 ------------------------CCACGCGTCCGCTTAAGCCCAGATGCGAATTATAAA 36 * * ************************* consensus_4245#0 CCAAGCGTTGCGCATGAATCGCCGATCACGGCTCTGTGTGTTACTTTTATGCTTTATTTC 120 consensus_4245#1 CCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTC 109 consensus_4245#2 CCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTC 96 ********************************** **************** ******** consensus_4245#0 GCCTATCTACGTATATGCTTGTGGCGTGAACATTTCGCAAACGTGACTGACACGGGATTT 180 consensus_4245#1 GCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTT 169 consensus_4245#2 GCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTT 156 ********************* * ************************************ consensus_4245#0 AAAGCTACCATCAGACGCAATCCCCTAACGAACTGAGCGTTATTATTGTAT--TTAAAAA 238 consensus_4245#1 AAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAA 229 consensus_4245#2 AAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAA 216 ********* ************ **************************** ******* consensus_4245#0 AATGATATCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGAGGATACTTTAC 298 consensus_4245#1 AATGATAGCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGTGGATACTTTAC 289 consensus_4245#2 AATGATAGCGCCTTTTTGCATCAAAACAACACTTTCTGAACAGTGGTGTGGATACTTTAC 276 ******* ************************ ************* *********** consensus_4245#0 GGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAA 358 consensus_4245#1 GGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAA 349 consensus_4245#2 GGCGGGTTGGGTTTTGCCCCCCCCGAACATTTGATACTCAGGAACTTAAAACTACTACAA 336 *********** **** * ************************************* consensus_4245#0 ACAACTTATTACAATTACGCGAGGAACCGGAAAGGAAGAAAAGGGAAAGAGAAGTAGAGA 418 consensus_4245#1 ACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGA 409 consensus_4245#2 ACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGA 396 ************************************ *********************** consensus_4245#0 TGATGATAATGCGATGAAAAGCAAAACAACCCTAAATCATCTTGTGGATTGTGTGTAATT 478 consensus_4245#1 TGATGATAATGCGATGAAAAGCAAAACAACCC-AAATCATCTTGTGGATTGTGTGTAATT 468 consensus_4245#2 TGATGATAATGCGATGAAAAGCAAAACAACCC-AAATCATCTTGTGGATTGTGTGTAATT 455 ******************************** *************************** consensus_4245#0 TCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT 538 consensus_4245#1 TCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT 528 consensus_4245#2 TCCACGAAGAGCGAACCGGAAAGGTCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT 515 ************************ *********************************** consensus_4245#0 CTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAATCGACGTGTTTTC 598 consensus_4245#1 CTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAA------------- 575 consensus_4245#2 ------------------------------------------------------------ consensus_4245#0 TCGTTTCTTAAAATGAAACAGTTCGAAAGTGCTTCAACACGTTCAATACAGCAATGTACA 658 consensus_4245#1 ------------------------------------------------------------ consensus_4245#2 ------------------------------------------------------------ consensus_4245#0 TCAGTTTTG 667 consensus_4245#1 --------- consensus_4245#2 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||