cluster # 4253

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Anopheles gambiae
cluster # 4253 cluster # 4253 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4253#0 length = 1084 sequences # 2

consensus_4253#1 length = 626 sequences # 1

consensusID : consensus_4253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1084
fasta sequence

                              [TCGAGGCCAAGAATCCGGCACGAGGAAAAAAACAGCAGTATACAAATAACACACACAATATAAAGCGAATACTATATACATATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAACCAATATCTTCCTTTGTACGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATAAAAAAAAAAAACAAATGCAAACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTAAGCTAGCGTGGCAGAAACAATATAGAACGCGCACACCACCAACCTGTGTGTTTTGGTGCGTGCGCGTTGCTGTGACGGGGATTTGTGTAGGGCAGTCACACGCCTTTGATATTAGGGAAACAAACGGACGCCACGACAGACAGTGGGGGTGAATGTTTCATAAATACTAAATGAAAACAGTGAGCAAATACTCCTCCAAGGAAGAAGTGGGTGTGTATGTAGCATTTATCGCGCATTGGACGACGCGCATGATAAAAACCGCGCGAGAAGAAAGGGGGAGTGCTAGTCGTGAAGAAGGTAGACTTTNCACCAGCCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTACGAGTGGTGGAAGTAAGCAAATAAGCAAAACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTCGTNCATCGTTTATGAGAAAGTATAGACCACTNGTNGAGAGCAGAAAACAAGCTGAAGATGGAAATGGACTGTGTACAATTGTACACAAGTGCGGTGGGGAGGGAATTTTTAGGTACTTTCCCCCATCCGGTGTATGTATAAAAACAAATGACGAAAGAAGTCACACAACGTTTTCTCACACGGAAGTTATTTTATATTTTGTTTCCTNTGTTATTAACGTTTAAGTTACTGAAGCCCTATCGTTTTATGNATGTATGGCTTTCCTTTCCCCATTTTGTTTCGTGCGAAAAGTCCTTTCTTTTTGTACGNGTATTATAATTTCTTTATACATAAAAAGGTTAAAAACGCAGCAAAAGGAAACACACATTGTTTTTTTTTTTTGTAATGAAATGCGAAACNAGAAATGTGAAGCATANTAGAAATTGCT]

[+] EMBL BX467967             [TCGAGGCCAAGAATCCGGCACGAGGAAAAAAACAGCAGTATACAAATAACACACACAATATAAAGCGAATACTATATACATATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAACCAATATCTTCCTTTGTACGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATAAAAAAAAAAAACAAATGCAAACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTAAGCTAGCGTGGCAGAAACAATATAGAACGCGCACACCACCAACCTGTGTGTTTTGGTGCGTGCGCGTTGCTGTGACGGGGATTTGTGTAGGGCAGTCACACGCCTTTGATATTAGGGAAACAAACGGACGCCACGACAGACAGTGGGGGTGAATGTTTCATAAATACTAAATGAAAACAGTGAGCAAATACTCCTCCAAGGAAGAAGTGGGTGTGTATGTAGCATTTATCGCGCATTGGACGACGCGCATGATAAAAACCGCGCGAGAAGAAAGGGGGAGTGCTAGTCGTGAAGAAGGTAGACTTTNCACCAGCCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTACGAGTGGTGGAAGTAAGCAAATAAGCAAAACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTCGTNCATCGTTTATGAGAAAGTATAGACCACTNGTNGAGAGCAGAAAACAAGCTGAAG                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX626510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAAGAAAGGGGGAGTGCTAGTCGTGAAGAAGGTAGACTTTTCACCA CCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTA GAGTGGTGGAAGTAAGCAAATAAGCAAAACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTCGTTCATCGTTTATGA AAAATATAGACCACTAGTAGAGAGCAGAAAACAAGCTGAAGATGGAAATGGACTGTGTACAATTGTACACAAGTGCGGTGGGGAGGGAATTTTTAGGTACTTTCCCCCATCCGGTGTATGTATAAAAACAAATGACGAAAGAAGTCACACAACGTTTTCTCACACGGAAGTTATTTTATATTTTGTTTCCTNTGTTATTAACGTTTAAGTTACTGAAGCCCTATCGTTTTATGNATGTATGGCTTTCCTTTCCCCATTTTGTTTCGTGCGAAAAGTCCTTTCTTTTTGTACGNGTATTATAATTTCTTTATACATAAAAAGGTTAAAAACGCAGCAAAAGGAAACACACATTGTTTTTTTTTTTTGTAATGAAATGCGAAACNAGAAATGTGAAGCATANTAGAAATTGCT]




>consensus_4253#0
TCGAGGCCAAGAATCCGGCACGAGGAAAAAAACAGCAGTATACAAATAACACACACAATA
TAAAGCGAATACTATATACATATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAAC
CAATATCTTCCTTTGTACGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATAAA
AAAAAAAAACAAATGCAAACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTA
AGCTAGCGTGGCAGAAACAATATAGAACGCGCACACCACCAACCTGTGTGTTTTGGTGCG
TGCGCGTTGCTGTGACGGGGATTTGTGTAGGGCAGTCACACGCCTTTGATATTAGGGAAA
CAAACGGACGCCACGACAGACAGTGGGGGTGAATGTTTCATAAATACTAAATGAAAACAG
TGAGCAAATACTCCTCCAAGGAAGAAGTGGGTGTGTATGTAGCATTTATCGCGCATTGGA
CGACGCGCATGATAAAAACCGCGCGAGAAGAAAGGGGGAGTGCTAGTCGTGAAGAAGGTA
GACTTTNCACCAGCCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTACGAGTG
GTGGAAGTAAGCAAATAAGCAAAACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTCGTN
CATCGTTTATGAGAAAGTATAGACCACTNGTNGAGAGCAGAAAACAAGCTGAAGATGGAA
ATGGACTGTGTACAATTGTACACAAGTGCGGTGGGGAGGGAATTTTTAGGTACTTTCCCC
CATCCGGTGTATGTATAAAAACAAATGACGAAAGAAGTCACACAACGTTTTCTCACACGG
AAGTTATTTTATATTTTGTTTCCTNTGTTATTAACGTTTAAGTTACTGAAGCCCTATCGT
TTTATGNATGTATGGCTTTCCTTTCCCCATTTTGTTTCGTGCGAAAAGTCCTTTCTTTTT
GTACGNGTATTATAATTTCTTTATACATAAAAAGGTTAAAAACGCAGCAAAAGGAAACAC
ACATTGTTTTTTTTTTTTGTAATGAAATGCGAAACNAGAAATGTGAAGCATANTAGAAAT
TGCT

consensusID : consensus_4253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CCGTATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAACCAATATCTTCCTTTGTACGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATTAAAAAAAAAACAAATGCAAACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTAAGCTAGCGTGGCAGAAACAATATAGAACGCGCACACCACCAACCTGTGGTTTGTGTGGGGCAGTTACACGCCTTTGATATTAGGGAAACAAACGGACGCCACACAGACAGTAGTGGGGTGAATGTTTCATAAATAACTAAATGAAAACAGTGAGCAAATACTCCTCCAAGGAAGTAGTGGTGTGTATGTAGCATTTATCGCGCATTGGACGACGCGCATGATAAAAACGGCGCGAGAAGAAAGGGGGAGTGCTAGTCGTGAAGAAGGTAAACTTTTCACCACCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTAGAGTGGTGGAAGTAAGCAAATAAGCAACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTCGTTCATCGTTTATGAAAAATATAGACCACTAGTAGAGAGCAGAAAACAAGCTGAAGATGGAAATGGACTGTGTAAAATTGTA]

[+] EMBL BM647715             [CCGTATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAACCAATATCTTCCTTTGTACGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATTAAAAAAAAAACAAATGCAAACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTAAGCTAGCGTGGCAGAAACAATATAGAACGCGCACACCACCAACCTGTGGTTTGTGTGGGGCAGTTACACGCCTTTGATATTAGGGAAACAAACGGACGCCACACAGACAGTAGTGGGGTGAATGTTTCATAAATAACTAAATGAAAACAGTGAGCAAATACTCCTCCAAGGAAGTAGTGGTGTGTATGTAGCATTTATCGCGCATTGGACGACGCGCATGATAAAAACGGCGCGAGAAGAAAGGGGGAGTGCTAGTCGTGAAGAAGGTAAACTTTTCACCACCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTAGAGTGGTGGAAGTAAGCAAATAAGCAACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTCGTTCATCGTTTATGAAAAATATAGACCACTAGTAGAGAGCAGAAAACAAGCTGAAGATGGAAATGGACTGTGTAAAATTGTA]




>consensus_4253#1
CCGTATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAACCAATATCTTCCTTTGTA
CGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATTAAAAAAAAAACAAATGCAA
ACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTAAGCTAGCGTGGCAGAAAC
AATATAGAACGCGCACACCACCAACCTGTGGTTTGTGTGGGGCAGTTACACGCCTTTGAT
ATTAGGGAAACAAACGGACGCCACACAGACAGTAGTGGGGTGAATGTTTCATAAATAACT
AAATGAAAACAGTGAGCAAATACTCCTCCAAGGAAGTAGTGGTGTGTATGTAGCATTTAT
CGCGCATTGGACGACGCGCATGATAAAAACGGCGCGAGAAGAAAGGGGGAGTGCTAGTCG
TGAAGAAGGTAAACTTTTCACCACCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAA
AGTAGAGTGGTGGAAGTAAGCAAATAAGCAACAAGTTGATTGGTTTCTGCATTAAGCTTT
AGTCGTTCATCGTTTATGAAAAATATAGACCACTAGTAGAGAGCAGAAAACAAGCTGAAG
ATGGAAATGGACTGTGTAAAATTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4253#0      TCGAGGCCAAGAATCCGGCACGAGGAAAAAAACAGCAGTATACAAATAACACACACAATA 60
consensus_4253#1      ------------------------------------------------------------
                                                                                  

consensus_4253#0      TAAAGCGAATACTATATACATATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAAC 120
consensus_4253#1      -----------------CCGTATAAATAGATAGTTAACCAAGTAATACAGCAAAACCAAC 43
                                        * ****************************************

consensus_4253#0      CAATATCTTCCTTTGTACGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATAAA 180
consensus_4253#1      CAATATCTTCCTTTGTACGTGGGTCGCTTGTTGCAGCAACACCCAACAGTCGTGCATTAA 103
                      ********************************************************* **

consensus_4253#0      AAAAAAAAACAAATGCAAACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTA 240
consensus_4253#1      AAAAAAAA-CAAATGCAAACTGCAAACAAACCAGAAAACCATTACAATTTAATGAATGTA 162
                      ******** ***************************************************

consensus_4253#0      AGCTAGCGTGGCAGAAACAATATAGAACGCGCACACCACCAACCTGTGTGTTTTGGTGCG 300
consensus_4253#1      AGCTAGCGTGGCAGAAACAATATAGAACGCGCACACCACCAACCTGTG------------ 210
                      ************************************************            

consensus_4253#0      TGCGCGTTGCTGTGACGGGGATTTGTGTAGGGCAGTCACACGCCTTTGATATTAGGGAAA 360
consensus_4253#1      --------------------GTTTGTGTGGGGCAGTTACACGCCTTTGATATTAGGGAAA 250
                                           ******* ******* ***********************

consensus_4253#0      CAAACGGACGCCACGACAGACAGTGG--GGGTGAATGTTTCATAAATA-CTAAATGAAAA 417
consensus_4253#1      CAAACGGACGCCAC-ACAGACAGTAGTGGGGTGAATGTTTCATAAATAACTAAATGAAAA 309
                      ************** ********* *  ******************** ***********

consensus_4253#0      CAGTGAGCAAATACTCCTCCAAGGAAGAAGTGGGTGTGTATGTAGCATTTATCGCGCATT 477
consensus_4253#1      CAGTGAGCAAATACTCCTCCAAGGAAGTAGTGG-TGTGTATGTAGCATTTATCGCGCATT 368
                      *************************** ***** **************************

consensus_4253#0      GGACGACGCGCATGATAAAAACCGCGCGAGAAGAAAGGGGGAGTGCTAGTCGTGAAGAAG 537
consensus_4253#1      GGACGACGCGCATGATAAAAACGGCGCGAGAAGAAAGGGGGAGTGCTAGTCGTGAAGAAG 428
                      ********************** *************************************

consensus_4253#0      GTAGACTTTNCACCAGCCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTACGA 597
consensus_4253#1      GTAAACTTTTCACCA-CCAAACGTTAATGCGCAAACCACTGCACTCTGTTCAAAGTA-GA 486
                      *** ***** ***** ***************************************** **

consensus_4253#0      GTGGTGGAAGTAAGCAAATAAGCAAAACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTC 657
consensus_4253#1      GTGGTGGAAGTAAGCAAATAAGCA--ACAAGTTGATTGGTTTCTGCATTAAGCTTTAGTC 544
                      ************************  **********************************

consensus_4253#0      GTNCATCGTTTATGAGAAAGTATAGACCACTNGTNGAGAGCAGAAAACAAGCTGAAGATG 717
consensus_4253#1      GTTCATCGTTTATGA-AAAATATAGACCACTAGTAGAGAGCAGAAAACAAGCTGAAGATG 603
                      ** ************ *** *********** ** *************************

consensus_4253#0      GAAATGGACTGTGTACAATTGTACACAAGTGCGGTGGGGAGGGAATTTTTAGGTACTTTC 777
consensus_4253#1      GAAATGGACTGTGTAAAATTGTA------------------------------------- 626
                      *************** *******                                     

consensus_4253#0      CCCCATCCGGTGTATGTATAAAAACAAATGACGAAAGAAGTCACACAACGTTTTCTCACA 837
consensus_4253#1      ------------------------------------------------------------
                                                                                  

consensus_4253#0      CGGAAGTTATTTTATATTTTGTTTCCTNTGTTATTAACGTTTAAGTTACTGAAGCCCTAT 897
consensus_4253#1      ------------------------------------------------------------
                                                                                  

consensus_4253#0      CGTTTTATGNATGTATGGCTTTCCTTTCCCCATTTTGTTTCGTGCGAAAAGTCCTTTCTT 957
consensus_4253#1      ------------------------------------------------------------
                                                                                  

consensus_4253#0      TTTGTACGNGTATTATAATTTCTTTATACATAAAAAGGTTAAAAACGCAGCAAAAGGAAA 1017
consensus_4253#1      ------------------------------------------------------------
                                                                                  

consensus_4253#0      CACACATTGTTTTTTTTTTTTGTAATGAAATGCGAAACNAGAAATGTGAAGCATANTAGA 1077
consensus_4253#1      ------------------------------------------------------------
                                                                                  

consensus_4253#0      AATTGCT 1084
consensus_4253#1      -------