These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCTTCAGCAGCCAGGATCACACTGTCCTAGTCTTCCCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGCCTTCCACTTCCCATCCCACCTCGCCCCCACGTCACTCGATCGTGTGTACAGCAACTCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGATTGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATCTATTCACCGTGTTCTTCGCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAATGCGTTGTACCGAAATTTGCGATTCTACTAAGTCAGTGAAGGTTTTTGTAGTTTGTGTGTGTGTGGTTT] [+] EMBL BM588054 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCTTCAGCAGCCAGGATCACACTGTCCTAGTCTTCCCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGCCTTCCACTTCCCATCCCACCTCGCCCCCACGTCACTCGATCGTGTGTACAGCAACTCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGATTGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATCTATTCACCGTGTTCTTCGCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAATGCGTTGTACCGAAATTTGCGATTCTACTAAGTCAGTGAAGGTTTTTGTAGTTTGTGTGTGTGTGGTTT] [+] EMBL BM646774 [ ccgCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGCCTTCCACTTCCCATCCCACCTCGCCCCCACGTCACTCGATCGTGTGTACAGCAACTCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGATTGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATCTATTCACCGTGTTCTTCGCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTCCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGA ] consensusID : consensus_4258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [CCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAGTAAGAACGAATAATAATTTCGAGCGTTGGCACCTTCGTTGGGCAAAACAGCAACACTACTACTATTACTACCACACACCCACTAACACATTGGCCCCCACCGCCTCTTTGCCGACCAATAATAGGGGGTTCGTCGCTTAGACGAATAACTGTTTTGTGCTATGCTGCTATTACTACTTCTACTACTACTACTACTACTACTATTACCACAATTACTACCACATCAGCATCGTTCTGCCACTAATAAGCTACCCTTCCTTCCTATGCTAACCTTAACTCTCTGCCGGCGTGATGCTCGCCACGATAGCGTGTAAGCGAAGCGAGGGAACACACACGCCGT] [+] EMBL BX627529 [CCACCGTCGCCGGCCAACGGTTCGGTTTCCCGCACACGTCCCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAGAGTAAGAACGAATAATAATTTCGAGCGTTGGCACCTTCGTTGGGCAAAACAGCAACACTACTACTATTACTACCACACACCCACTAACACATTGGCCCCCACCGCCTCTTTGCCGACCAATAATAGGGGGTTCGTCGCTTAGACGAATAACTGTTTTGTGCTATGCTGCTATTACTACTTCTACTACTACTACTACTACTACTATTACCACAATTACTACCACATCAGCATCGTTCTGCCACTAATAAGCTACCCTTCCTTCCTATGCTAACCTTAACTCTCTGCCGGCGTGATGCTCGCCACGATAGCGTGTAAGCGAAGCGAGGGAACACACACGCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4258#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTGCTTCAGCAGCCAGGATCACACTGTCCTAGT 60 consensus_4258#1 ---CCACCGTCGCCGGCCAACGGTTCGGT-TTCCCGCA-CACGTCCCAGTTCGGGCTCGC 55 ** ** *** *** ** **** * * *** * * ** * ** * consensus_4258#0 CTTCCCCAGCTCCCCCCCAGCTTGAAAGGTTTGCCTGTGTGAACTCAGGTTTCCCGGTGC 120 consensus_4258#1 CTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACAGGATTTGTCAGGTAC 115 ** * * * * * * ** * * * *** ** ** * *** * consensus_4258#0 CTTCCAC-TTCCCATCCCACCTCGCCCCCA----CGTCACTCGATCGTGTGTACAGCAAC 175 consensus_4258#1 TTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGTTGTGTTCCCGCCAGC 175 ** ** * *** * ** * ** ** * * **** * ** * consensus_4258#0 TCCAGCAAGTGTCCCGAGAAACAGCCGGAAGAGTGAACTGTGATACCTTCGTGTAGTGAT 235 consensus_4258#1 GCCCGCCGATGCTCC-AGTTGAGTCGAGCGGAGTGATTGTTGGTGCTTCCGGATACGGTT 234 ** ** ** ** ** * * ****** ** * * * ** ** * * consensus_4258#0 TGCCGCAAGTTTAAACACACAAACCAATCATCAAAATGAATC-TATTCACCGTGTTCTTC 294 consensus_4258#1 TCGTGCCA--CCGAATACGC---CCCAGAGTAAGAACGAATAATAATTTCGAGCGTTGGC 289 * ** * ** ** * ** * * * ** **** ** * * * * consensus_4258#0 GCCCTCGTCCTGGCAGTGGCCACCGTCGCCGGCCAACGGTTCGGTTT-CCCGCACACGTC 353 consensus_4258#1 ACCTTCGTTGGGCAAAACAGCAACACTACTA-CTATTACTACCACACACCCACTAACACA 348 ** **** * * ** * * * * * * *** * ** consensus_4258#0 CCAGTTCGGGCTCGCCTCGCTGACCGGTGACTTCGGTGGACCGAGCGCCTTCGGTGGACA 413 consensus_4258#1 TTGGCCCCCAC-CGCCTCTTTGCCGACCAATAATAGGGGGTTCGTCGC-TTAGACGAATA 406 * * * ****** ** * * * ** *** ** * * * * consensus_4258#0 GGATTTGTCAGGTACTTTGAACGCTGGTATCAGAGATCCGCGACAGAACCGAGGACCCGT 473 consensus_4258#1 A---CTGTTTTGTGCT----ATGCTGCTATTA-----CTACTTCTACTACTACTACTACT 454 *** ** ** * **** *** * * * * * * ** * consensus_4258#0 TGTGTTCCCGCCAGCGCCCGCCGATGCTCCAGTTGAGTCGAGCGGAGTGATTGTTGGTGC 533 consensus_4258#1 ACTACTATTACCA-CAATTACTACCACATCAGCATCGTTCTGCC-ACTAATAAGCTACCC 512 * * *** * * * *** ** ** * * ** * consensus_4258#0 TTCCGGATACGGTTTCGTGCCACCGAATACGCCCCAG-AATGCGTTGTAC-CGAAATTTG 591 consensus_4258#1 TTCCT-------TCCTATGCTAACCTTAACTCTCTGCCGGCGTGATGCTCGCCACGATAG 565 **** * *** * * ** * * * * ** * * * * * consensus_4258#0 CGATTCTACTAAGTCAGTGAAGGTTTTTGTAGTTTGTGTGTGTGTGGTTT 641 consensus_4258#1 CGTGTAAGCGAAGCGAGGGAACACACACGCCGT----------------- 598 ** * * *** ** *** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||