cluster # 4270

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Anopheles gambiae
cluster # 4270 cluster # 4270 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4270#0 length = 720 sequences # 2

consensus_4270#1 length = 702 sequences # 1

consensusID : consensus_4270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 720
fasta sequence

                              [GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATCCACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGTGTTGTGCGCT-GACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGATAGATGTTGGGGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTTCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGGAGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTGTTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCAAGT]

[+] EMBL BX469636             [GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATCCACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGTGTTGTGCGCT GACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGATAGATGTTGGGGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTTCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGGAGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTGTTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCAAGT]
[+] EMBL BX628985             [                                                                        GTGGAAGGAGGACTGATCGATGTAGCTCACCACGAAACCTGGGCTCG GTTG GCGCTGGACGAAACGGCCGAAAT GGCGAAGGCTATTGATACGGCGCGCAAAATGACCAGCGAGCAAGATACGTTGATC GTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGA GGAAAATCATGCCATCCTAGCGGATCCTTCAAACTACGATTACAAGCAGACAGATATGCGGTACAT GGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGAT GATGTTGGGGTCTGGGCGT CGGGCCCAATGTCGCACCTGTTCC GGGGTGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATC GGTGACTATTACG AAGAGTCC GA CTCTg                                                                                                                    ]




>consensus_4270#0
GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATC
CACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGT
GTTGTGCGCTGACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGA
CCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTAC
AATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGAC
CTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACC
GAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATAT
GCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGATAGATGTTGGG
GTCTGGGCGTNCGGGCCCAATGTCGCACCTGTTCCGGGGGCGTTTACGAACAGAACACCA
TCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGGAGC
TCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTGTTC
CCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCAAGT

consensusID : consensus_4270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [GAATCGCACGAGGTTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGCAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGATGATGTTGGGGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATCGGTGACTATTACGAAGAGTCCGACTCTGGCGCCGGCCAACCATTAGCCGTGTGCCTGTCACTACTTCTAGGCTGTTCCATTGCCGCGCTAATGAGGCGATATTAATCCTCCTGTCCTATTGGTAACAATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGTAACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCGATAAGGGGACACCGGCTTATCAGAAAGTGT]

[+] EMBL BX468741             [GAATCGCACGAGGTTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGCAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGATGATGTTGGGGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATCGGTGACTATTACGAAGAGTCCGACTCTGGCGCCGGCCAACCATTAGCCGTGTGCCTGTCACTACTTCTAGGCTGTTCCATTGCCGCGCTAATGAGGCGATATTAATCCTCCTGTCCTATTGGTAACAATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGTAACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCGATAAGGGGACACCGGCTTATCAGAAAGTGT]




>consensus_4270#1
GAATCGCACGAGGTTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGTC
GTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGAC
ATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTAC
GCCAATGGGCTGTCGTACTACACGACCTACACCGAGGAAAATCATGCCATCCGAGCGGAT
CCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGCAATGGTACCAATGGAT
GCGGAAACGCACGGGTGGCGATGATGTTGGGGTCTGGGCGTCGGGGCCCAATGTCGCACC
TGTTTNCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCC
AGATCGGTGACTATTACGAAGAGTCCGACTCTGGCGCCGGCCAACCATTAGCCGTGTGCC
TGTCACTACTTCTAGGCTGTTCCATTGCCGCGCTAATGAGGCGATATTAATCCTCCTGTC
CTATTGGTAACAATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTA
ATACAACGACGTAACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTT
AGATTACGCCCGATAAGGGGACACCGGCTTATCAGAAAGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4270#0      GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATC 60
consensus_4270#1      ------------------------------------------------------------
                                                                                  

consensus_4270#0      CACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGT 120
consensus_4270#1      ------------------------------------------------------------
                                                                                  

consensus_4270#0      GTTGTGCGCTGACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGA 180
consensus_4270#1      ----------------------GAATCGCACGAGG----TTGATACGGCGCGCAAAATGA 34
                                            ***  *  *** *    *********************

consensus_4270#0      CCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTAC 240
consensus_4270#1      CCAGCGAGCAGGATACGTTGATCG-TCGTTAGCTCGGATCATTCCCACACGATGACGTAC 93
                      ************************ ***********************************

consensus_4270#0      AATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGAC 300
consensus_4270#1      AATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGAC 153
                      ************************************************************

consensus_4270#0      CTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACC 360
consensus_4270#1      CTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACC 213
                      *********** * ** *******************************************

consensus_4270#0      GAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATAT 420
consensus_4270#1      GAGG-AAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATAT 272
                      **** *******************************************************

consensus_4270#0      GCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGG-TGGCGATAGATGTTGG 479
consensus_4270#1      GCGCTACATGG-CAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGAT-GATGTTGG 330
                      *********** ******************************* ******* ********

consensus_4270#0      GGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTT--CCGGGGGCGTTTACGAACAGAACA 537
consensus_4270#1      GGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACA 390
                      ***********  *********************  ************************

consensus_4270#0      CCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGG 597
consensus_4270#1      CCATCCCGTACCTGATCTCGTACATCGCCCAGATCGG-TGACTATTACGAA-GAGTCCGA 448
                      **************************  ********* ************* ******* 

consensus_4270#0      AGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTG 657
consensus_4270#1      ---CTCTGGCGCCGG--CCAACCA-TTAGCCGTGTGCCTGTCAC-TACTT-CTAGGC-TG 499
                            ** ******  * ***** ******************* ***** ****** **

consensus_4270#0      TTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCA 717
consensus_4270#1      TTCC--ATTGCCG-CGCTAATGAGGCG-ATA--TTAATCC-TCCTGTCCTATTGGTAACA 552
                      ****   ****** ******* *** * ***  ******* *****  ********* **

consensus_4270#0      AGT--------------------------------------------------------- 720
consensus_4270#1      ATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGT 612
                      *                                                           

consensus_4270#0      ------------------------------------------------------------
consensus_4270#1      AACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCG 672
                                                                                  

consensus_4270#0      ------------------------------
consensus_4270#1      ATAAGGGGACACCGGCTTATCAGAAAGTGT 702